mRNA_A-nodosum_M_contig9171.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9171.4.1
Unique NamemRNA_A-nodosum_M_contig9171.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9171.4.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 6.000e-11
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    4 NNCFLNAALGLALAVFDGQSLPDSSYCTPAAAAFFSAFIIIKDNMFQGNPLQQRVL 171
            NN FLN+A+ L LA FDG S PD   CTPA AAFF A  +I+D MF G  LQQ  L
Sbjct: 1968 NNYFLNSAMALTLAAFDGLSPPDGRDCTPAGAAFFPAIKLIQDTMFNGESLQQDTL 2023
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9171.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN07_9PHAE6.000e-1158.93ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9171contigA-nodosum_M_contig9171:13761..14411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK0
PFAMsHelitron_like_N,PIF1
Model size252
Max annot lvl2759|Eukaryota
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categorysignal peptide
Exons2
Evalue8.72e-11
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size249
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870376.0803254-CDS-A-nodosum_M_contig9171:13760..139311680870376.0803254-CDS-A-nodosum_M_contig9171:13760..13931Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9171 13761..13931 +
1680870376.0930467-CDS-A-nodosum_M_contig9171:14332..144101680870376.0930467-CDS-A-nodosum_M_contig9171:14332..14410Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9171 14333..14410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9171.4.1prot_A-nodosum_M_contig9171.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9171 13761..14410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9171.4.1

>prot_A-nodosum_M_contig9171.4.1 ID=prot_A-nodosum_M_contig9171.4.1|Name=mRNA_A-nodosum_M_contig9171.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=83bp
GNNCFLNAALGLALAVFDGQSLPDSSYCTPAAAAFFSAFIIIKDNMFQGN
PLQQRVLGCYYHYYSRDPSKLHRRKNRGILLVT
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mRNA from alignment at A-nodosum_M_contig9171:13761..14411+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9171.4.1 ID=mRNA_A-nodosum_M_contig9171.4.1|Name=mRNA_A-nodosum_M_contig9171.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=651bp|location=Sequence derived from alignment at A-nodosum_M_contig9171:13761..14411+ (Ascophyllum nodosum dioecious)
GGAAACAACTGCTTCTTGAATGCAGCATTGGGCTTGGCTCTGGCTGTGTT
TGACGGACAATCGCTTCCAGATTCTTCTTACTGTACACCAGCTGCTGCGG
CCTTCTTCTCTGCCTTCATTATCATCAAAGACAACATGTTCCAAGGGAAT
CCTCTACAGCAACGTGTACTGGTGAGGTTTGGTCAAAATTAAAACATATT
ATGTATCTTTTTCCAGGTACCGAATCCTTTTCCTGTACCACGATACACAT
ATGTGCTTAATCGCTTAACTTTCAATGCCCGCATTGATCATTGTCAGGAC
GCCGCTAGTAAAGCTCGAGACGTCATATTTCCGCACATTAGTTTATCGGG
TGGAGGTTCTCAAATGCGTGCTGTAGCCTCCGTTTTCGAGGCCATCGCCA
GACGCTGCTCAGAAAATACTCCTGACCCTTGTACTACGGACATCAATGAA
CAACTACGCCTAATTGTTGCCACCAGACACGTGTTAGGACTTGACTGGAG
CTACAAGGTCGACTGCAACGTACACGACCACAACCAACGGCGTACCACAT
GTGACCAAACCGCCACCTATAGGGATGCTACTATCATTACTATTCCAGAG
ACCCAAGCAAGCTCCATCGGCGGAAAAATCGCGGAATTCTCTTAGTCACC
G
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9171:13761..14411+

>mRNA_A-nodosum_M_contig9171.4.1 ID=mRNA_A-nodosum_M_contig9171.4.1|Name=mRNA_A-nodosum_M_contig9171.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig9171:13761..14411+ (Ascophyllum nodosum dioecious)
GGAAACAACTGCTTCTTGAATGCAGCATTGGGCTTGGCTCTGGCTGTGTT
TGACGGACAATCGCTTCCAGATTCTTCTTACTGTACACCAGCTGCTGCGG
CCTTCTTCTCTGCCTTCATTATCATCAAAGACAACATGTTCCAAGGGAAT
CCTCTACAGCAACGTGTACTGGGATGCTACTATCATTACTATTCCAGAGA
CCCAAGCAAGCTCCATCGGCGGAAAAATCGCGGAATTCTCTTAGTCACC
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