mRNA_A-nodosum_M_contig9171.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9171.3.1
Unique NamemRNA_A-nodosum_M_contig9171.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9171.3.1 vs. uniprot
Match: A0A6H5L805_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L805_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 1.960e-57
Identity = 91/119 (76.47%), Postives = 98/119 (82.35%), Query Frame = 3 
Query:    3 VKQNEAHRMVFQCEKGKHTDHIRIRSKATNTLLFFRGIKQPRTWVAWDRDVAGGEWEDLKLEWVGSPPGLNGSLRADERGRVIIHSRHLNAYVSWNGSHFTHVPNREGATVFMFQRAAP 359
            VKQNEAHRM+FQ E G+H DH+RIRS+ATNT LFF GIKQP TWVAWDRDV GGEWEDLKLEWVG P G +G L  DERGRV+I SR +  YVSWNGS FTHVP REGATVFM QR AP
Sbjct:  616 VKQNEAHRMLFQAENGRHRDHVRIRSRATNTFLFFLGIKQPLTWVAWDRDVVGGEWEDLKLEWVGKPQGPDGVLVGDERGRVVIRSRPMKGYVSWNGSRFTHVPGREGATVFMLQRMAP 734
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BLAST of mRNA_A-nodosum_M_contig9171.3.1 vs. uniprot
Match: A0A835YVS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.150e-28
Identity = 50/112 (44.64%), Postives = 75/112 (66.96%), Query Frame = 3 
Query:   12 NEAHRMVFQCEKGKHTDHIRIRSKATNTLLFFRGIKQPRTWVAWDRDVAGGEWEDLKLEWVGSPPGLNGSLRADERGRVIIHSRHLNAYVSWNGSHFTHVPNREGATVFMFQ 347
            ++AHR+VFQCE G+   H+RIRS+ +NT LF  G+++P T VAWDR+VAGG+WED+++ W+          RA++ GRV+I  +    Y+ W G+ F H P ++ A+ FM Q
Sbjct:  496 HDAHRLVFQCEPGRAAGHVRIRSRGSNTYLFMLGLRRPLTLVAWDREVAGGDWEDMRIVWL---------PRAEDEGRVLIRCKTAGGYLQWTGTKFVHTPVKDSASRFMLQ 598
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BLAST of mRNA_A-nodosum_M_contig9171.3.1 vs. uniprot
Match: A0A835ZHV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHV2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.110e-26
Identity = 49/115 (42.61%), Postives = 72/115 (62.61%), Query Frame = 3 
Query:    3 VKQNEAHRMVFQCEKGKHTDHIRIRSKATNTLLFFRGIKQPRTWVAWDRDVAGGEWEDLKLEWVGSPPGLNGSLRADERGRVIIHSRHLNAYVSWNGSHFTHVPNREGATVFMFQ 347
            V  ++A+RM+FQCE G+ + H+ +RS+ TNTLLF  G+++PRT VAWDR+V GG+WED+++EW             +  G V+I  +    Y+ W G  F HV  R+ A+ FM Q
Sbjct:  407 VDPHDANRMLFQCEPGRASGHVWLRSRGTNTLLFMLGLRKPRTLVAWDREVPGGDWEDMRIEWC-----------PEHNGHVVISCKRAGGYLQWTGDRFGHVDERDCASRFMLQ 510
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BLAST of mRNA_A-nodosum_M_contig9171.3.1 vs. uniprot
Match: D8LSC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC8_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.020e-13
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 3 
Query:    3 VKQNEAHRMVFQCEKGKHTDHIRIRSKATNTLLFFRGIKQPRTWV 137
            VKQNEAHRM+FQ E G+H  H+RIRS+ATNT LFF GIKQP TWV
Sbjct:  415 VKQNEAHRMLFQAENGRHRGHVRIRSRATNTFLFFLGIKQPLTWV 459
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9171.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L805_9PHAE1.960e-5776.47Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835YVS8_9STRA2.150e-2844.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZHV2_9STRA3.110e-2642.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LSC8_ECTSI1.020e-1375.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9171contigA-nodosum_M_contig9171:3964..5311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size524
Hectar predicted targeting categoryother localisation
Exons2
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870376.0131993-UTR-A-nodosum_M_contig9171:3963..39891680870376.0131993-UTR-A-nodosum_M_contig9171:3963..3989Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9171 3964..3989 +
1680870376.0486598-UTR-A-nodosum_M_contig9171:5158..53111680870376.0486598-UTR-A-nodosum_M_contig9171:5158..5311Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9171 5159..5311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870376.0284908-CDS-A-nodosum_M_contig9171:3989..41001680870376.0284908-CDS-A-nodosum_M_contig9171:3989..4100Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9171 3990..4100 +
1680870376.0386238-CDS-A-nodosum_M_contig9171:4924..51581680870376.0386238-CDS-A-nodosum_M_contig9171:4924..5158Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9171 4925..5158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9171.3.1prot_A-nodosum_M_contig9171.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9171 3990..5158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9171.3.1

>prot_A-nodosum_M_contig9171.3.1 ID=prot_A-nodosum_M_contig9171.3.1|Name=mRNA_A-nodosum_M_contig9171.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=115bp
MVFQCEKGKHTDHIRIRSKATNTLLFFRGIKQPRTWVAWDRDVAGGEWED
LKLEWVGSPPGLNGSLRADERGRVIIHSRHLNAYVSWNGSHFTHVPNREG
ATVFMFQRAAPRPA*
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mRNA from alignment at A-nodosum_M_contig9171:3964..5311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9171.3.1 ID=mRNA_A-nodosum_M_contig9171.3.1|Name=mRNA_A-nodosum_M_contig9171.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1348bp|location=Sequence derived from alignment at A-nodosum_M_contig9171:3964..5311+ (Ascophyllum nodosum dioecious)
AGGTGAAGCAGAACGAGGCTCACCGCATGGTGTTCCAATGCGAGAAAGGA
AAGCACACGGATCATATCCGAATACGCTCTAAGGCCACCAACACCTTACT
TTTCTTCCGGGGAATCAAGCAGCCCCGCACTTGGGTGGTAAGAGAGCGCC
TACATTCCCCGCCCCTGATTGGTTGGATGCTTAGAAGGTTTAGATGCGTT
CATATTTTTCAAACCACATTATTTATGGATGTGGAGGAAGGGAGTAATCT
CGCTTGACCCTTCTTCATTGGTTTACAGTGGTTTTCGTTATTTCTCTCAC
TCTTACTTTTTGGTTTTAACTGCTGCTTTTTTCTGTTTTTTTTCTCTTCG
TTCTCTTCTTTCAATGATTTTCACACACACAACTTGGTATCTTGTCCAAT
TTTCGCACTTTTTTCACACTTTACCTGGTACCTTTTCCAAGAGCCTGGAG
GCCATCTACTATCTACTAACTGACTATCTAGCGGATTTCCGCTTCGGCGA
CAGAGCTTAGCTGCCGATTATCCGCCGAGTCCATGGAAGTGCTTGAAAAT
CCTGTGCAAACAAAAGGTTTTGTCTTAACAGCCTATGATCCCACCTAAAT
GTTTTGACATTTTCCCTCCCTGACTGGGGGATGCTCAGAAGGTCTATAGA
TGCGTCCAGATTTTTCTTTTATCAGGGAATATTCACAACGGATCCCAGAG
GATTTTTGTTCCAGTAATCGAGTGGCGTGTGTTCGACTTGAAAGCTACCA
AAAAATAGAAGGCCGCTCAACAGCAACACGAACAAGACCCCCCCCCCGAA
CAATATAGATAAAACAGGGAGTAATAATTAAACACGCGACCTTCCCCGAA
AGCCAACGTACATCACCTGGCCTACGGTCAGAACGAAACGATCCCAGCGG
CATTTTCGTCCCAACATATCCCCGCCTTTACCCCTCACGCTTCCCTGCGA
AATTGCGCAAGGCTTGGGATCGCGACGTGGCTGGTGGAGAGTGGGAGGAC
CTGAAGCTGGAGTGGGTTGGGAGTCCTCCCGGTCTCAACGGCTCCCTGCG
TGCGGACGAGCGGGGACGGGTGATCATCCACAGCCGGCACTTGAATGCGT
ACGTGTCATGGAATGGTTCGCACTTCACGCACGTGCCGAACAGGGAGGGC
GCGACGGTGTTTATGTTCCAGCGGGCTGCTCCCCGCCCGGCGTGAGGCCC
GAGCAACGCCGAAAGGACGGTTGAGGTGTGAGGCGTCGTGGCGAGAAAGT
TCGGCGCCTGCGGGGTTAGCAAAATTTTGATACACGTAAATTAGCGGGGT
CAAGGGCGCACGCCCAGACGGGGGATGGGTGATTGACGCGTTGTTTTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9171:3964..5311+

>mRNA_A-nodosum_M_contig9171.3.1 ID=mRNA_A-nodosum_M_contig9171.3.1|Name=mRNA_A-nodosum_M_contig9171.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=345bp|location=Sequence derived from alignment at A-nodosum_M_contig9171:3964..5311+ (Ascophyllum nodosum dioecious)
ATGGTGTTCCAATGCGAGAAAGGAAAGCACACGGATCATATCCGAATACG
CTCTAAGGCCACCAACACCTTACTTTTCTTCCGGGGAATCAAGCAGCCCC
GCACTTGGGTGGCTTGGGATCGCGACGTGGCTGGTGGAGAGTGGGAGGAC
CTGAAGCTGGAGTGGGTTGGGAGTCCTCCCGGTCTCAACGGCTCCCTGCG
TGCGGACGAGCGGGGACGGGTGATCATCCACAGCCGGCACTTGAATGCGT
ACGTGTCATGGAATGGTTCGCACTTCACGCACGTGCCGAACAGGGAGGGC
GCGACGGTGTTTATGTTCCAGCGGGCTGCTCCCCGCCCGGCGTGA
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