mRNA_A-nodosum_M_contig917.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig917.13.1
Unique NamemRNA_A-nodosum_M_contig917.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig917.13.1 vs. uniprot
Match: A0A6H5KJ82_9PHAE (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ82_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.820e-16
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 LGQVIEHASMFVSGFTIGFLRGWQLALVMLCVVPPLAVAGVVMLKKLAYLTTLIQKSTAAAGGVAEVI 204
            L ++I+  SMFVSGFTIGF++GW+L+LVML VVPPLA+AG  +   LA L +  QKS AAAGGVAE +
Sbjct:  204 LARLIQFMSMFVSGFTIGFVKGWELSLVMLSVVPPLAIAGGFLFGDLARLASQFQKSNAAAGGVAEEV 271          
BLAST of mRNA_A-nodosum_M_contig917.13.1 vs. uniprot
Match: D8LB49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB49_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 6.050e-16
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 LGQVIEHASMFVSGFTIGFLRGWQLALVMLCVVPPLAVAGVVMLKKLAYLTTLIQKSTAAAGGVAE 198
            L ++I+  SMFVSGFTIGF++GW+L+LVML VVPPLA+AG  +   LA L +  QKS AAAGGVAE
Sbjct:  201 LARLIQFMSMFVSGFTIGFVKGWELSLVMLSVVPPLAIAGGFLFGDLARLASQFQKSNAAAGGVAE 266          
BLAST of mRNA_A-nodosum_M_contig917.13.1 vs. uniprot
Match: A0A4Y2M007_ARAVE (Multidrug resistance protein 1B (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2M007_ARAVE)

HSP 1 Score: 62.8 bits (151), Expect = 7.340e-10
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 LGQVIEHASMFVSGFTIGFLRGWQLALVMLCVVPPLAVAGVVMLKKLAYLTTLIQKSTAAAGGVAE 198
            LG +I++AS FVSGF +GF++GWQL LV+L V P L ++  ++ K   +  T  QK  A AGG+AE
Sbjct:   13 LGILIQYASTFVSGFLVGFVKGWQLTLVILSVTPLLTLSSAILGKMTTFAATEEQKKYAIAGGIAE 78          
BLAST of mRNA_A-nodosum_M_contig917.13.1 vs. uniprot
Match: A0A0D2U039_CAPO3 (Multidrug resistance protein 1a n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U039_CAPO3)

HSP 1 Score: 62.4 bits (150), Expect = 1.040e-9
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 LGQVIEHASMFVSGFTIGFLRGWQLALVMLCVVPPLAVAGVVMLKKLAYLTTLIQKSTAAAGGVAEVI 204
            +G   +H + F +GF I F+RGWQLALV+L V+P LAV G    K LA  TT  QK+ A AG +AE +
Sbjct:  265 VGVFFQHFTTFFAGFVIAFVRGWQLALVLLAVIPFLAVCGGFFSKMLASATTKGQKAYAGAGAIAEEV 332          
BLAST of mRNA_A-nodosum_M_contig917.13.1 vs. uniprot
Match: A0A2T9Y2V7_9FUNG (Uncharacterized protein n=2 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9Y2V7_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 2.660e-9
Identity = 29/68 (42.65%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 LGQVIEHASMFVSGFTIGFLRGWQLALVMLCVVPPLAVAGVVMLKKLAYLTTLIQKSTAAAGGVAEVI 204
            +G +I++ S F SG  + F+RGW++ALV+LCV+P + V+  ++ K +   T L+Q S A AGGVA  +
Sbjct:  199 MGFMIQYISTFCSGIILAFVRGWKMALVVLCVIPLIVVSSAILSKFIVKFTRLVQTSYAGAGGVATEV 266          
BLAST of mRNA_A-nodosum_M_contig917.13.1 vs. uniprot
Match: A0A067CTD7_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CTD7_SAPPC)

HSP 1 Score: 59.7 bits (143), Expect = 9.280e-9
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 LGQVIEHASMFVSGFTIGFLRGWQLALVMLCVVPPLAVAGVVMLKKLAYLTTLIQKSTAAAGGVAE 198
            LG+ ++    F+SG+ IGF++GW +ALVM  V+P +A+    ++K+L   T   Q+S AAAG VAE
Sbjct:  177 LGEAVQFTCQFISGYIIGFVKGWNVALVMCAVMPMMAITMTFLIKRLRDSTAQSQRSYAAAGAVAE 242          
BLAST of mRNA_A-nodosum_M_contig917.13.1 vs. uniprot
Match: A0A485KDS9_9STRA (Aste57867_3317 protein n=3 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDS9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.270e-8
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 LGQVIEHASMFVSGFTIGFLRGWQLALVMLCVVPPLAVAGVVMLKKLAYLTTLIQKSTAAAGGVAE 198
            LG+ +     F++G+ IGF+RGW L+LVM CV+P +AV+   ++K+L   T   QK  AAAG VAE
Sbjct:  180 LGEALRFVCQFLTGYLIGFVRGWNLSLVMSCVMPLMAVSLTFVIKRLRDSTARSQKVYAAAGAVAE 245          
BLAST of mRNA_A-nodosum_M_contig917.13.1 vs. uniprot
Match: F4PX48_CAVFA (ABC transporter B family protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PX48_CAVFA)

HSP 1 Score: 59.3 bits (142), Expect = 1.270e-8
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    1 LGQVIEHASMFVSGFTIGFLRGWQLALVMLCVVPPLAVAGVVMLKKLAYLTTLIQKSTAAAGGVAE 198
            +G  +   S F+SGF IG + GWQLALV+L + P LA AG  M K +  LT   Q S A AG VAE
Sbjct:  236 VGSFLHFTSTFISGFVIGLINGWQLALVILALTPLLAAAGAFMTKMMTDLTKKGQDSYAKAGAVAE 301          
BLAST of mRNA_A-nodosum_M_contig917.13.1 vs. uniprot
Match: T0PV04_SAPDV (ABC transmembrane type-1 domain-containing protein (Fragment) n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PV04_SAPDV)

HSP 1 Score: 58.9 bits (141), Expect = 1.680e-8
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 LGQVIEHASMFVSGFTIGFLRGWQLALVMLCVVPPLAVAGVVMLKKLAYLTTLIQKSTAAAGGVAE 198
            LG+ ++    FVSG+ IGF++GW +ALVM  V+P +A+    ++K+L   T   Q++ AAAG VAE
Sbjct:  175 LGEAVQFTCQFVSGYIIGFVKGWNVALVMCAVMPMMAITMTFLIKRLRDSTAQSQRAYAAAGAVAE 240          
BLAST of mRNA_A-nodosum_M_contig917.13.1 vs. uniprot
Match: A0A453FYL0_AEGTS (Uncharacterized protein n=4 Tax=Triticinae TaxID=1648030 RepID=A0A453FYL0_AEGTS)

HSP 1 Score: 58.9 bits (141), Expect = 1.720e-8
Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 LGQVIEHASMFVSGFTIGFLRGWQLALVMLCVVPPLAVAGVVMLKKLAYLTTLIQKSTAAAGGVAE 198
            +G++I+  S F  GF + F+RGW L LVML  +PP+AVAG ++L+ +  L+T +Q     AG + E
Sbjct:   25 VGKIIQLLSTFFGGFVVAFVRGWLLTLVMLSSIPPVAVAGAIVLRMMTTLSTKMQAKYGDAGDIVE 90          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig917.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ82_9PHAE1.820e-1661.76ABC transmembrane type-1 domain-containing protein... [more]
D8LB49_ECTSI6.050e-1663.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4Y2M007_ARAVE7.340e-1048.48Multidrug resistance protein 1B (Fragment) n=1 Tax... [more]
A0A0D2U039_CAPO31.040e-950.00Multidrug resistance protein 1a n=1 Tax=Capsaspora... [more]
A0A2T9Y2V7_9FUNG2.660e-942.65Uncharacterized protein n=2 Tax=Smittium megazygos... [more]
A0A067CTD7_SAPPC9.280e-943.94Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485KDS9_9STRA1.270e-846.97Aste57867_3317 protein n=3 Tax=Aphanomyces stellat... [more]
F4PX48_CAVFA1.270e-850.00ABC transporter B family protein n=1 Tax=Cavenderi... [more]
T0PV04_SAPDV1.680e-843.94ABC transmembrane type-1 domain-containing protein... [more]
A0A453FYL0_AEGTS1.720e-842.42Uncharacterized protein n=4 Tax=Triticinae TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig917contigA-nodosum_M_contig917:220027..220233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB49
PFAMsABC_membrane,ABC_tran
Model size207
Max annot lvl2759|Eukaryota
KEGG koko:K05658
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.53e-14
EggNOG OGsCOG1132@1|root,KOG0055@2759|Eukaryota
EC3.6.3.44
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size180
COG categoryV
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870375.8959825-CDS-A-nodosum_M_contig917:220026..2202061680870375.8959825-CDS-A-nodosum_M_contig917:220026..220206Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig917 220027..220206 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870375.9108717-UTR-A-nodosum_M_contig917:220206..2202331680870375.9108717-UTR-A-nodosum_M_contig917:220206..220233Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig917 220207..220233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig917.13.1prot_A-nodosum_M_contig917.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig917 220027..220206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig917.13.1

>prot_A-nodosum_M_contig917.13.1 ID=prot_A-nodosum_M_contig917.13.1|Name=mRNA_A-nodosum_M_contig917.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=60bp
MFVSGFTIGFLRGWQLALVMLCVVPPLAVAGVVMLKKLAYLTTLIQKSTA
AAGGVAEVI*
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mRNA from alignment at A-nodosum_M_contig917:220027..220233-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig917.13.1 ID=mRNA_A-nodosum_M_contig917.13.1|Name=mRNA_A-nodosum_M_contig917.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at A-nodosum_M_contig917:220027..220233- (Ascophyllum nodosum dioecious)
CTGGGGCAGGTGATTGAACACGCCAGTATGTTCGTCTCGGGCTTCACGAT CGGATTCTTGCGCGGCTGGCAGCTCGCGCTGGTTATGCTGTGCGTTGTGC CGCCCTTGGCCGTGGCGGGGGTGGTCATGTTGAAGAAGCTTGCGTACCTC ACCACGCTCATACAGAAGAGCACGGCTGCCGCCGGCGGGGTAGCGGAGGT AATTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig917:220027..220233-

>mRNA_A-nodosum_M_contig917.13.1 ID=mRNA_A-nodosum_M_contig917.13.1|Name=mRNA_A-nodosum_M_contig917.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=180bp|location=Sequence derived from alignment at A-nodosum_M_contig917:220027..220233- (Ascophyllum nodosum dioecious)
ATGTTCGTCTCGGGCTTCACGATCGGATTCTTGCGCGGCTGGCAGCTCGC
GCTGGTTATGCTGTGCGTTGTGCCGCCCTTGGCCGTGGCGGGGGTGGTCA
TGTTGAAGAAGCTTGCGTACCTCACCACGCTCATACAGAAGAGCACGGCT
GCCGCCGGCGGGGTAGCGGAGGTAATTTGA
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