mRNA_A-nodosum_M_contig916.38.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig916.38.1
Unique NamemRNA_A-nodosum_M_contig916.38.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig916.38.1 vs. uniprot
Match: L1INA3_GUITC (RWP-RK domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1INA3_GUITC)

HSP 1 Score: 52.4 bits (124), Expect = 1.720e-7
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   28 QELGISTTSLKRLCRTYGINGWPYRQITGVDRKIKRKEVELQ 153
            +ELGI  TSLK+LCR+YGI  WP+R++  + R +K+ E E Q
Sbjct:   17 KELGICLTSLKKLCRSYGITRWPFRKLKSLQRTMKKVETESQ 58
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BLAST of mRNA_A-nodosum_M_contig916.38.1 vs. uniprot
Match: A0A7S0MC49_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MC49_9CRYP)

HSP 1 Score: 53.1 bits (126), Expect = 3.100e-7
Identity = 21/42 (50.00%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   28 QELGISTTSLKRLCRTYGINGWPYRQITGVDRKIKRKEVELQ 153
            +ELGI  TSLK+LCR+YGI  WP+R++  ++R +K+ + EL+
Sbjct:   42 KELGICLTSLKKLCRSYGITRWPFRKLKSLERTMKKVQTELE 83
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BLAST of mRNA_A-nodosum_M_contig916.38.1 vs. uniprot
Match: A0A6U6BVU6_GUITH (Hypothetical protein n=3 Tax=Guillardia theta TaxID=55529 RepID=A0A6U6BVU6_GUITH)

HSP 1 Score: 52.4 bits (124), Expect = 1.690e-6
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   28 QELGISTTSLKRLCRTYGINGWPYRQITGVDRKIKRKEVELQ 153
            +ELGI  TSLK+LCR+YGI  WP+R++  + R +K+ E E Q
Sbjct:   77 KELGICLTSLKKLCRSYGITRWPFRKLKSLQRTMKKVETESQ 118
[Close]
BLAST of mRNA_A-nodosum_M_contig916.38.1 vs. uniprot
Match: A0A7S4L9S7_GUITH (Hypothetical protein n=6 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4L9S7_GUITH)

HSP 1 Score: 52.4 bits (124), Expect = 1.770e-6
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   28 QELGISTTSLKRLCRTYGINGWPYRQITGVDRKIKRKEVELQ 153
            +ELGI  TSLK+LCR+YGI  WP+R++  + R +K+ E E Q
Sbjct:   77 KELGICLTSLKKLCRSYGITRWPFRKLKSLQRTMKKVETESQ 118
[Close]
BLAST of mRNA_A-nodosum_M_contig916.38.1 vs. uniprot
Match: L1IUU2_GUITC (RWP-RK domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IUU2_GUITC)

HSP 1 Score: 49.7 bits (117), Expect = 2.540e-6
Identity = 19/40 (47.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   28 QELGISTTSLKRLCRTYGINGWPYRQITGVDRKIKRKEVE 147
            +ELGI  TSLK+LCR+YGI  WP+R++  ++R +++ + E
Sbjct:   35 KELGICLTSLKKLCRSYGITRWPFRKLKSLERTMRKVQTE 74
[Close]
BLAST of mRNA_A-nodosum_M_contig916.38.1 vs. uniprot
Match: A0A0A1TYR8_ENTIV (RWP-RK domain-containing protein n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1TYR8_ENTIV)

HSP 1 Score: 50.4 bits (119), Expect = 5.240e-6
Identity = 21/41 (51.22%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   28 QELGISTTSLKRLCRTYGINGWPYRQITGVDRKIKRKEVEL 150
            ++LGI+TT LK+ CR+ G+  WPYR+I  VDR+I++ E  L
Sbjct:   64 EKLGITTTLLKKACRSIGVKRWPYRKILKVDREIQKNETIL 104
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BLAST of mRNA_A-nodosum_M_contig916.38.1 vs. uniprot
Match: A0A7S0XY68_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XY68_HEMAN)

HSP 1 Score: 50.8 bits (120), Expect = 6.150e-6
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   28 QELGISTTSLKRLCRTYGINGWPYRQITGVDRKIKRKEVELQSS 159
            +ELGI  TSLK+LCR+YGI  WP+R++  ++R +K+ + E  +S
Sbjct:   37 KELGICLTSLKKLCRSYGITRWPFRKLKSLERTMKKVQNEQDTS 80
[Close]
BLAST of mRNA_A-nodosum_M_contig916.38.1 vs. uniprot
Match: A0A7S1DU84_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DU84_HEMAN)

HSP 1 Score: 50.8 bits (120), Expect = 6.200e-6
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   28 QELGISTTSLKRLCRTYGINGWPYRQITGVDRKIKRKEVELQSS 159
            +ELGI  TSLK+LCR+YGI  WP+R++  ++R +K+ + E  +S
Sbjct:   35 KELGICLTSLKKLCRSYGITRWPFRKLKSLERTMKKVQNEQDTS 78
[Close]
BLAST of mRNA_A-nodosum_M_contig916.38.1 vs. uniprot
Match: A0A7S0VA07_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VA07_9CRYP)

HSP 1 Score: 49.7 bits (117), Expect = 7.630e-6
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   28 QELGISTTSLKRLCRTYGINGWPYRQITGVDRKIKRKEVE 147
            +ELGI  TSLK+LCR+YGI  WP+R++  ++R +K+ + E
Sbjct:   42 KELGICLTSLKKLCRSYGITRWPFRKLKSLERTMKKVQNE 81
[Close]
BLAST of mRNA_A-nodosum_M_contig916.38.1 vs. uniprot
Match: A0A7S4L2W5_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4L2W5_GUITH)

HSP 1 Score: 50.1 bits (118), Expect = 1.110e-5
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   28 QELGISTTSLKRLCRTYGINGWPYRQITGVDRKIKRKEVELQSS 159
            ++LGI  TSLK++CR++GI+ WPYR++  +DRK +R   E  S+
Sbjct:   25 KQLGICLTSLKKVCRSHGIDRWPYRKMKSLDRKAQRNVCESVST 68
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig916.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
L1INA3_GUITC1.720e-752.38RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S0MC49_9CRYP3.100e-750.00Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A6U6BVU6_GUITH1.690e-652.38Hypothetical protein n=3 Tax=Guillardia theta TaxI... [more]
A0A7S4L9S7_GUITH1.770e-652.38Hypothetical protein n=6 Tax=Guillardia theta TaxI... [more]
L1IUU2_GUITC2.540e-647.50RWP-RK domain-containing protein n=1 Tax=Guillardi... [more]
A0A0A1TYR8_ENTIV5.240e-651.22RWP-RK domain-containing protein n=1 Tax=Entamoeba... [more]
A0A7S0XY68_HEMAN6.150e-647.73Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S1DU84_HEMAN6.200e-647.73Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S0VA07_9CRYP7.630e-650.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S4L2W5_GUITH1.110e-547.73Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig916contigA-nodosum_M_contig916:297629..297787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog55529.EKX54883
PFAMsRWP-RK
Model size159
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.39e-08
EggNOG OGs2D12Y@1|root,2SGI5@2759|Eukaryota
DescriptionRWP-RK domain
Cds size159
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870375.130513-CDS-A-nodosum_M_contig916:297628..2977871680870375.130513-CDS-A-nodosum_M_contig916:297628..297787Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig916 297629..297787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig916.38.1prot_A-nodosum_M_contig916.38.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig916 297629..297787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig916.38.1

>prot_A-nodosum_M_contig916.38.1 ID=prot_A-nodosum_M_contig916.38.1|Name=mRNA_A-nodosum_M_contig916.38.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=53bp
MPIFLRTETQELGISTTSLKRLCRTYGINGWPYRQITGVDRKIKRKEVEL
QSS
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mRNA from alignment at A-nodosum_M_contig916:297629..297787-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig916.38.1 ID=mRNA_A-nodosum_M_contig916.38.1|Name=mRNA_A-nodosum_M_contig916.38.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at A-nodosum_M_contig916:297629..297787- (Ascophyllum nodosum dioecious)
ATGCCGATCTTCTTGCGTACCGAAACTCAGGAGCTCGGAATATCGACAAC
AAGCCTGAAGAGGCTCTGTCGTACATATGGAATCAATGGCTGGCCTTATC
GCCAGATTACCGGAGTCGACCGTAAAATCAAACGCAAGGAGGTTGAACTT
CAATCATCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig916:297629..297787-

>mRNA_A-nodosum_M_contig916.38.1 ID=mRNA_A-nodosum_M_contig916.38.1|Name=mRNA_A-nodosum_M_contig916.38.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=159bp|location=Sequence derived from alignment at A-nodosum_M_contig916:297629..297787- (Ascophyllum nodosum dioecious)
ATGCCGATCTTCTTGCGTACCGAAACTCAGGAGCTCGGAATATCGACAAC
AAGCCTGAAGAGGCTCTGTCGTACATATGGAATCAATGGCTGGCCTTATC
GCCAGATTACCGGAGTCGACCGTAAAATCAAACGCAAGGAGGTTGAACTT
CAATCATCG
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