mRNA_A-nodosum_M_contig9144.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9144.3.1
Unique NamemRNA_A-nodosum_M_contig9144.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig9144.3.1 vs. uniprot
Match: A0A6H5JDL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL2_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.910e-25
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    1 GGSAAFEGLGDRLEEELKAMLPEALADRVEVRVPSADDLRHRNPLSRCSPSAVMIGAELLLER------EGLSGEPWITCTSWAEQPEVLTAALAPYVRD 282
            GGSA  +GLGDRLEE+LKAMLPE ++++V+VRVP+AD+L HRN  SR  PSAV +GAE+LLE        G  G  WIT   WAE PEVLT AL P++ +
Sbjct: 1005 GGSARMDGLGDRLEEDLKAMLPEWMSEKVDVRVPAADELNHRNRTSRGDPSAVTVGAEILLEEGAGSNDHGTKGGDWITTAQWAETPEVLTRALVPFLSE 1104
[Close]
BLAST of mRNA_A-nodosum_M_contig9144.3.1 vs. uniprot
Match: D7FHM1_ECTSI (TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM1_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 4.030e-17
Identity = 54/111 (48.65%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:    1 GGSAAFEGLGDRLEEELKAMLPEALADRVEVRVPSADDLRHR----------------------NPLSRCSPSAVMIGAELLLER------EGLSGEPWITCTSWAEQPEV 249
            GGSA  +GLGDRLEE+LKAMLPE +++RV+VRVP+AD+L HR                      N  SR  PSAV +GAE+LLE        G  G  WIT   WAE PEV
Sbjct: 1626 GGSARMDGLGDRLEEDLKAMLPEWMSERVDVRVPAADELNHRFVPVMKPFLEKAEKEAAALKTRNRTSRGDPSAVTVGAEMLLEEGAGSNDAGTDGGDWITTAQWAETPEV 1736
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9144.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDL2_9PHAE2.910e-2558.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHM1_ECTSI4.030e-1748.65TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus sil... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9144contigA-nodosum_M_contig9144:5808..6644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHM1
PFAMsActin,BRCT,Filamin,Ist1,PARP,PARP_reg,VIT,VWA_3
Model size672
Max annot lvl2759|Eukaryota
KEGG koko:K10798,ko:K11767
KEGG Pathwayko03410,ko04210,ko04212,ko04214,ko04217,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.29e-10
EggNOG OGsCOG5277@1|root,KOG0676@2759|Eukaryota
EC2.4.2.30
DescriptionATP binding
Cds size255
COG categoryZ
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03032,ko03036,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870370.3307812-UTR-A-nodosum_M_contig9144:5807..61671680870370.3307812-UTR-A-nodosum_M_contig9144:5807..6167Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9144 5808..6167 -
1680870370.4365954-UTR-A-nodosum_M_contig9144:6587..66441680870370.4365954-UTR-A-nodosum_M_contig9144:6587..6644Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9144 6588..6644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870370.4136405-CDS-A-nodosum_M_contig9144:6167..63541680870370.4136405-CDS-A-nodosum_M_contig9144:6167..6354Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9144 6168..6354 -
1680870370.4259179-CDS-A-nodosum_M_contig9144:6519..65871680870370.4259179-CDS-A-nodosum_M_contig9144:6519..6587Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9144 6520..6587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9144.3.1prot_A-nodosum_M_contig9144.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9144 6168..6587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9144.3.1

>prot_A-nodosum_M_contig9144.3.1 ID=prot_A-nodosum_M_contig9144.3.1|Name=mRNA_A-nodosum_M_contig9144.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=85bp
MLPEALADRVEVRVPSADDLRHRNPLSRCSPSAVMIGAELLLEREGLSGE
PWITCTSWAEQPEVLTAALAPYVRDDSPRGKSVK*
back to top

mRNA from alignment at A-nodosum_M_contig9144:5808..6644-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9144.3.1 ID=mRNA_A-nodosum_M_contig9144.3.1|Name=mRNA_A-nodosum_M_contig9144.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=837bp|location=Sequence derived from alignment at A-nodosum_M_contig9144:5808..6644- (Ascophyllum nodosum dioecious)
GGGGGCTCCGCGGCGTTCGAGGGTCTGGGAGACAGACTCGAGGAAGAATT
GAAGGCTATGCTCCCGGAAGCGTTAGCGGACCGTGTTGAAGTTCGAGTAC
CCTCCGCCGACGACCTACGACACAGGTCAGTGCGTGCTCCATGACGGTGA
TTGAAGCAGCTCCTGAAAAAATAACACATGCACGGAGAGAAAGTATCAGC
CGTAATCTATGTCCGAAAATAATTAACACTTCAGGGTGCTTACTCCACTA
CCCTCTGTCCTTGTCCGCATGCACCGCCTTTTCCCTCCAGGAACCCCCTC
TCTCGTTGCAGTCCGTCTGCTGTAATGATTGGCGCAGAGCTTCTACTCGA
GAGAGAAGGCCTCAGCGGAGAGCCCTGGATCACATGTACGAGCTGGGCAG
AGCAGCCAGAGGTGCTGACGGCAGCTCTGGCCCCCTATGTAAGGGACGAC
AGCCCACGCGGGAAAAGTGTTAAGTGAACTGCCCACTCCACACCCAAACG
GGGTTTTGTCCACCTCGACCGTAGACATTTTGCACCCCGAGGTCGTGTAG
ACCCTGTCATTAGGCACTCGCCCCTCATGTTGAAAGTCAACCACGACGGG
ATTTTGCGTCTCTCTCCAAGTACGTGGAAATCACCCCTGTATCGTCAAAA
TATCGGGCATGATCGTACGGGGATGTGTGGCGTCAGAAGGCGTGTTTATT
CAATAGATCGTCTGCGTATGTAGGAAGAAAACATTATGTAGCTCGTGCAT
GTAGGTGTAATTGCGCTCTCTTGCTGATTTCGAACCAGTATGTTGATGAC
GATTGGAAATGTGCATCTTGTACTCTTATAATAGGTG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9144:5808..6644-

>mRNA_A-nodosum_M_contig9144.3.1 ID=mRNA_A-nodosum_M_contig9144.3.1|Name=mRNA_A-nodosum_M_contig9144.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=255bp|location=Sequence derived from alignment at A-nodosum_M_contig9144:5808..6644- (Ascophyllum nodosum dioecious)
ATGCTCCCGGAAGCGTTAGCGGACCGTGTTGAAGTTCGAGTACCCTCCGC
CGACGACCTACGACACAGGAACCCCCTCTCTCGTTGCAGTCCGTCTGCTG
TAATGATTGGCGCAGAGCTTCTACTCGAGAGAGAAGGCCTCAGCGGAGAG
CCCTGGATCACATGTACGAGCTGGGCAGAGCAGCCAGAGGTGCTGACGGC
AGCTCTGGCCCCCTATGTAAGGGACGACAGCCCACGCGGGAAAAGTGTTA
AGTGA
back to top