mRNA_A-nodosum_M_contig9137.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9137.5.1
Unique NamemRNA_A-nodosum_M_contig9137.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9137.5.1 vs. uniprot
Match: D7G816_ECTSI (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G816_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 4.430e-48
Identity = 74/93 (79.57%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:    1 NIVSIDFCKPLINSMQLVHGNKPGLEWKVMDARNMAGLETGSFDAVIDKGLTDSIMYNDKFSIMMAEVSYEVARVLKPGGVYLMTDYREPDRV 279
            +IVSIDFC P+I +MQ  H +KPG+EWKVMDAR+M   ETGSFDAVIDKGLTDS+MYNDKFS+MMA+VSYEVARVLKPGGVYLMTDYR+P+RV
Sbjct:    8 DIVSIDFCNPVIEAMQSAHADKPGMEWKVMDARDMVEFETGSFDAVIDKGLTDSVMYNDKFSVMMAKVSYEVARVLKPGGVYLMTDYRDPERV 100
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BLAST of mRNA_A-nodosum_M_contig9137.5.1 vs. uniprot
Match: A0A6H5KHX6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX6_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.140e-46
Identity = 74/93 (79.57%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:    1 NIVSIDFCKPLINSMQLVHGNKPGLEWKVMDARNMAGLETGSFDAVIDKGLTDSIMYNDKFSIMMAEVSYEVARVLKPGGVYLMTDYREPDRV 279
            +IVSIDFC P+I +MQ  H +KPG+EWKVMDAR+MA LETGSFDAVIDKGLTDS+MYNDKFS+MMA+VSYEVARVLKPGGVYLM DYR+P+R+
Sbjct:  155 DIVSIDFCNPVIEAMQSAHADKPGMEWKVMDARDMAELETGSFDAVIDKGLTDSVMYNDKFSVMMAKVSYEVARVLKPGGVYLMADYRDPERI 247
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BLAST of mRNA_A-nodosum_M_contig9137.5.1 vs. uniprot
Match: A0A835YJ55_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ55_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.800e-21
Identity = 42/89 (47.19%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:    7 VSIDFCKPLINSMQLVHGNKPGLEWKVMDARNMAGLETGSFDAVIDKGLTDSIMYNDKFSIMMAEVSYEVARVLKPGGVYLMTDYREPD 273
            ++IDF KP+I+ M+  H +KPG+EW VMDAR+M+G+  GS   VIDKGL D++ ++D++   + +V  E ARVL+PGG Y+ T +  P+
Sbjct:  101 INIDFSKPVIDLMRSKHTDKPGMEWAVMDARDMSGVPDGSVQTVIDKGLIDALTHSDQYRDDIQKVVAESARVLRPGGSYICTSFNTPE 189
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BLAST of mRNA_A-nodosum_M_contig9137.5.1 vs. uniprot
Match: A0A7J7GLQ8_CAMSI (Methyltransf_11 domain-containing protein n=4 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7GLQ8_CAMSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.080e-15
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 NIVSIDFCKPLINSMQLVHGNKPGLEWKVMDARNMAGLETGSFDAVIDKGLTDSIMYNDKFSIMMAEVSYEVARVLKPGGVYLMTDYREP 270
            ++V+ID    +I +MQ  + N P L++  MDAR+M+  +TGSFDAVIDKG  DS++      I  A++  EV RVLK  GVY++  Y  P
Sbjct:   72 DVVNIDISSVVIEAMQKKYSNHPQLKYIKMDARDMSAFQTGSFDAVIDKGTLDSLLCGSNSQINAAKMLEEVGRVLKDKGVYILITYGAP 161
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BLAST of mRNA_A-nodosum_M_contig9137.5.1 vs. uniprot
Match: Q0J4F7_ORYSJ (Os08g0517600 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q0J4F7_ORYSJ)

HSP 1 Score: 76.6 bits (187), Expect = 2.650e-15
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 NIVSIDFCKPLINSMQLVHGNKPGLEWKVMDARNMAGLETGSFDAVIDKGLTDSIMYNDKFSIMMAEVSYEVARVLKPGGVYLMTDYREP 270
            +IV+ID    +I+ M+  + +KP L++  MD RNMA  E+GSFDAVIDKG  DSIM         +++  EV R+LK  GVY++  Y +P
Sbjct:   77 DIVNIDISSVVIDQMKKKYRDKPHLKYMKMDVRNMAEFESGSFDAVIDKGTLDSIMCGQNSQENASQMLEEVNRILKDKGVYILITYGDP 166
[Close]
BLAST of mRNA_A-nodosum_M_contig9137.5.1 vs. uniprot
Match: A0A067K6U1_JATCU (Methyltransf_11 domain-containing protein n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067K6U1_JATCU)

HSP 1 Score: 77.8 bits (190), Expect = 3.000e-15
Identity = 40/90 (44.44%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 NIVSIDFCKPLINSMQLVHGNKPGLEWKVMDARNMAGLETGSFDAVIDKGLTDSIMYNDKFSIMMAEVSYEVARVLKPGGVYLMTDYREP 270
            ++V++D    +IN+MQ  + N+P L++  MD R+M+  +TGSFDAVIDKG  DSIM  ++ ++ M E   E  RVLK  GVY++  Y  P
Sbjct:   80 DVVNVDISSVVINAMQNKYSNRPQLKYIQMDVRDMSAFQTGSFDAVIDKGTLDSIMCGEQNAVSMLE---ETWRVLKDKGVYILITYGTP 166
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BLAST of mRNA_A-nodosum_M_contig9137.5.1 vs. uniprot
Match: A0A0K9QEV9_SPIOL (Methyltransf_11 domain-containing protein n=3 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QEV9_SPIOL)

HSP 1 Score: 76.3 bits (186), Expect = 8.350e-15
Identity = 41/90 (45.56%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:    1 NIVSIDFCKPLINSMQLVHGNKPGLEWKVMDARNMAGLETGSFDAVIDKGLTDSIMYNDKFSIMMAEVSYEVARVLKPGGVYLMTDYREP 270
            +IV+ID     I +MQ  H N P L++  MD R M  LETGSFDAVIDKG  D+I+  +      + +  EV RVLK  GVY++  Y  P
Sbjct:   73 DIVNIDISSVAIEAMQKKHSNHPQLKYFTMDVREMGTLETGSFDAVIDKGTLDTILCGNDSKQNSSSMLAEVGRVLKDKGVYILITYGAP 162
[Close]
BLAST of mRNA_A-nodosum_M_contig9137.5.1 vs. uniprot
Match: A0A0E0LWX2_ORYPU (Methyltransf_11 domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=A0A0E0LWX2_ORYPU)

HSP 1 Score: 76.6 bits (187), Expect = 1.520e-14
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 NIVSIDFCKPLINSMQLVHGNKPGLEWKVMDARNMAGLETGSFDAVIDKGLTDSIMYNDKFSIMMAEVSYEVARVLKPGGVYLMTDYREP 270
            +IV+ID    +I+ M+  + +KP L++  MD RNMA  E+GSFDAVIDKG  DSIM         +++  EV R+LK  GVY++  Y +P
Sbjct:  159 DIVNIDISSVVIDQMKKKYRDKPHLKYMKMDVRNMAEFESGSFDAVIDKGTLDSIMCGQNSQENASQMLEEVNRILKDKGVYILITYGDP 248
[Close]
BLAST of mRNA_A-nodosum_M_contig9137.5.1 vs. uniprot
Match: A0A0D9X9S8_9ORYZ (Methyltransf_11 domain-containing protein n=13 Tax=Oryzinae TaxID=1648021 RepID=A0A0D9X9S8_9ORYZ)

HSP 1 Score: 75.1 bits (183), Expect = 2.040e-14
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 NIVSIDFCKPLINSMQLVHGNKPGLEWKVMDARNMAGLETGSFDAVIDKGLTDSIMYNDKFSIMMAEVSYEVARVLKPGGVYLMTDYREP 270
            +IV+ID    +I  M+  + +KP L++  MD RNMA  E+GSFDAVIDKG  DSIM         + +  EV R+LK  GVY++  Y +P
Sbjct:   74 DIVNIDISSVVIEQMKKKYRDKPHLKYMKMDVRNMAEFESGSFDAVIDKGTLDSIMCGQNSQENASTMLEEVNRILKDKGVYILITYGDP 163
[Close]
BLAST of mRNA_A-nodosum_M_contig9137.5.1 vs. uniprot
Match: D8RMH9_SELML (Methyltransf_11 domain-containing protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RMH9_SELML)

HSP 1 Score: 74.7 bits (182), Expect = 2.490e-14
Identity = 43/92 (46.74%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:    4 IVSIDFCKPLINSMQLVHGNKPGLEWKVMDARNMAGLETGSFDAVIDKGLTDSIMYNDKFSI---MMAEVSYEVARVLKPGGVYLMTDYREP 270
            IV+IDF   +I  MQ  H + P L +  MD RNMA     SFDAVIDKGL DS++      I    M E +  + RVLKPGGV+++  Y EP
Sbjct:   70 IVNIDFSSVVIKKMQQRHRHIPQLTYVTMDVRNMAVFGDNSFDAVIDKGLMDSMLCGSNGFIDVSFMLEETRRLLRVLKPGGVFILITYGEP 161
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9137.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G816_ECTSI4.430e-4879.57Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A6H5KHX6_9PHAE1.140e-4679.57Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A835YJ55_9STRA1.800e-2147.19S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7J7GLQ8_CAMSI1.080e-1544.44Methyltransf_11 domain-containing protein n=4 Tax=... [more]
Q0J4F7_ORYSJ2.650e-1544.44Os08g0517600 protein n=2 Tax=Oryza sativa subsp. j... [more]
A0A067K6U1_JATCU3.000e-1544.44Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A0K9QEV9_SPIOL8.350e-1545.56Methyltransf_11 domain-containing protein n=3 Tax=... [more]
A0A0E0LWX2_ORYPU1.520e-1444.44Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A0D9X9S8_9ORYZ2.040e-1444.44Methyltransf_11 domain-containing protein n=13 Tax... [more]
D8RMH9_SELML2.490e-1446.74Methyltransf_11 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9137contigA-nodosum_M_contig9137:9051..9817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G816
PFAMsMethyltransf_11
Model size280
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.26e-49
EggNOG OGsKOG2352@1|root,KOG2352@2759|Eukaryota
Descriptionmethyltransferase activity
Cds size279
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870369.7128544-CDS-A-nodosum_M_contig9137:9050..91281680870369.7128544-CDS-A-nodosum_M_contig9137:9050..9128Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9137 9051..9128 -
1680870369.7274396-CDS-A-nodosum_M_contig9137:9440..95571680870369.7274396-CDS-A-nodosum_M_contig9137:9440..9557Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9137 9441..9557 -
1680870369.7377388-CDS-A-nodosum_M_contig9137:9733..98171680870369.7377388-CDS-A-nodosum_M_contig9137:9733..9817Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9137 9734..9817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9137.5.1prot_A-nodosum_M_contig9137.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9137 9051..9817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9137.5.1

>prot_A-nodosum_M_contig9137.5.1 ID=prot_A-nodosum_M_contig9137.5.1|Name=mRNA_A-nodosum_M_contig9137.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
NIVSIDFCKPLINSMQLVHGNKPGLEWKVMDARNMAGLETGSFDAVIDKG
LTDSIMYNDKFSIMMAEVSYEVARVLKPGGVYLMTDYREPDRV
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mRNA from alignment at A-nodosum_M_contig9137:9051..9817-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9137.5.1 ID=mRNA_A-nodosum_M_contig9137.5.1|Name=mRNA_A-nodosum_M_contig9137.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=767bp|location=Sequence derived from alignment at A-nodosum_M_contig9137:9051..9817- (Ascophyllum nodosum dioecious)
AACATCGTAAGCATTGACTTCTGCAAGCCTTTAATCAACTCTATGCAGCT
TGTTCACGGGAATAAGCCTGGGCTTGAGTGGAAGGTGGGTGACCCTTTTA
TGTTCCCGTTGTCGAGCGCTCGGCTCCAACTCTGTATCGCGGATCATTAG
TCACTTAAATGTTCAAGTTTCAAACCGTGTATATATTCCTCCCGAGATAT
TGCGCCAAAATTGGGCAAATCAATGCGTCGTGACATATTTTTACCCCTTC
TCGTCGGCAGGTGATGGATGCGAGAAATATGGCAGGCCTTGAGACAGGGT
CGTTCGACGCCGTCATCGACAAGGGATTGACGGATTCTATCATGTACAAC
GATAAGTTTAGCATTATGATGGCCGAGGTAGGCAATGTGACAGCCCTATT
TTCTGCTGATATCCTTCCCAGATAGGGTCATTCTCTCCCCGAGGTTTTGT
TCTCCACAAGAGCGGGATAGAACCCACTCCCACAGAACTCCATCAAGGTA
GGAAGGTGATCAGCCAGACTACGAGTTGTGAGCACCAAAATAAATTTAGA
CTTAATAAGCCTAAGCATCCTACCGGAGCTTCTTCGAAAGCTCCCGCAAC
ACGCAAGACTCGCGACATCCTCTCATGAGGCAGATGCAACCGCCACCGGT
GTGTGTTACGACGGCTTGGCTAAACCCTGCCTCTGCCAGGTTTCCTACGA
GGTAGCTCGAGTGCTAAAGCCGGGCGGTGTCTATCTCATGACGGACTATC
GAGAGCCCGACAGGGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9137:9051..9817-

>mRNA_A-nodosum_M_contig9137.5.1 ID=mRNA_A-nodosum_M_contig9137.5.1|Name=mRNA_A-nodosum_M_contig9137.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig9137:9051..9817- (Ascophyllum nodosum dioecious)
AACATCGTAAGCATTGACTTCTGCAAGCCTTTAATCAACTCTATGCAGCT
TGTTCACGGGAATAAGCCTGGGCTTGAGTGGAAGGTGATGGATGCGAGAA
ATATGGCAGGCCTTGAGACAGGGTCGTTCGACGCCGTCATCGACAAGGGA
TTGACGGATTCTATCATGTACAACGATAAGTTTAGCATTATGATGGCCGA
GGTTTCCTACGAGGTAGCTCGAGTGCTAAAGCCGGGCGGTGTCTATCTCA
TGACGGACTATCGAGAGCCCGACAGGGTG
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