mRNA_A-nodosum_M_contig913.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig913.2.1
Unique NamemRNA_A-nodosum_M_contig913.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig913.2.1 vs. uniprot
Match: D8LB74_ECTSI (Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB74_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.090e-27
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 MPRTEELPIYTLEEFNNKLLNGRSWVIVDGAVLDVSPFAKRHPGGARLIINALGTDVTSEIAG 189
            MPRTEELPIYT++EFN+K+LNGRSWVIVDGAVL+VS FAKRHPGG RLIINA+GTDVTSE  G
Sbjct:  109 MPRTEELPIYTMQEFNDKVLNGRSWVIVDGAVLNVSDFAKRHPGGIRLIINAMGTDVTSEFLG 171
[Close]
BLAST of mRNA_A-nodosum_M_contig913.2.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 8.530e-26
Identity = 48/63 (76.19%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 MPRTEELPIYTLEEFNNKLLNGRSWVIVDGAVLDVSPFAKRHPGGARLIINALGTDVTSEIAG 189
            MPRTE+LPIY++ EFN+K+LNG+SWV+VDGA+LDVS FAKRHPGG RLIINALGTD+T E+ G
Sbjct: 1144 MPRTEDLPIYSVAEFNDKVLNGQSWVLVDGAILDVSDFAKRHPGGQRLIINALGTDITQELLG 1206
[Close]
BLAST of mRNA_A-nodosum_M_contig913.2.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.950e-25
Identity = 47/63 (74.60%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 MPRTEELPIYTLEEFNNKLLNGRSWVIVDGAVLDVSPFAKRHPGGARLIINALGTDVTSEIAG 189
            MPRTE+LPIY++ EFN+K+LNG+SWV+VDGA+LDVS FA+RHPGG RLIINALGTD+T E+ G
Sbjct:  454 MPRTEDLPIYSVAEFNDKVLNGQSWVLVDGAILDVSEFAQRHPGGRRLIINALGTDITQELLG 516
[Close]
BLAST of mRNA_A-nodosum_M_contig913.2.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 9.080e-24
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 MPRTEELPIYTLEEFNNKLLNGRSWVIVDGAVLDVSPFAKRHPGGARLIINALGTDVTSEIAG 189
            +PRTE+LPIY+L EFN K+LNG+SW++VDGA+LDVS F  RHPGG RLI+NALGTDVT+E+ G
Sbjct:  972 VPRTEDLPIYSLAEFNEKVLNGQSWLLVDGAILDVSEFTARHPGGRRLILNALGTDVTAELLG 1034
[Close]
BLAST of mRNA_A-nodosum_M_contig913.2.1 vs. uniprot
Match: A0A6H5JX59_9PHAE (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX59_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.690e-23
Identity = 53/80 (66.25%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    1 MPRTEELPIYTLEEFNNK-----------------LLNGRSWVIVDGAVLDVSPFAKRHPGGARLIINALGTDVTSEIAG 189
            MPRTEELPIYTL+EFN K                 +LNGRSWVIVDGAVL+VS FA+RHPGG RLIINA+GTDVTSE  G
Sbjct:  163 MPRTEELPIYTLQEFNEKALDVCLPSSWGFGFIHQVLNGRSWVIVDGAVLNVSDFAERHPGGMRLIINAMGTDVTSEFLG 242
[Close]
BLAST of mRNA_A-nodosum_M_contig913.2.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.600e-20
Identity = 42/63 (66.67%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 MPRTEELPIYTLEEFNNKLLNGRSWVIVDGAVLDVSPFAKRHPGGARLIINALGTDVTSEIAG 189
            +PRT +LPIY++  FN+K+L+G+SW++VD AVLDVS FA+RHPGG RLI+NALGTDVT E+ G
Sbjct:  873 IPRTLDLPIYSVAAFNDKVLSGQSWLMVDEAVLDVSDFAQRHPGGRRLILNALGTDVTQELIG 935
[Close]
BLAST of mRNA_A-nodosum_M_contig913.2.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.180e-20
Identity = 41/63 (65.08%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 MPRTEELPIYTLEEFNNKLLNGRSWVIVDGAVLDVSPFAKRHPGGARLIINALGTDVTSEIAG 189
            +PRT +LPIY++  FN+K+L+G++W++VD AVLDVS FA+RHPGG RLI+NALGTDVT E+ G
Sbjct:  874 IPRTLDLPIYSISAFNDKVLSGQTWLMVDEAVLDVSDFAQRHPGGRRLILNALGTDVTQELLG 936
[Close]
BLAST of mRNA_A-nodosum_M_contig913.2.1 vs. uniprot
Match: A0A6H5JQ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ31_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.970e-20
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 MPRTEELPIYTLEEFNNKLLNGRSWVIVDGAVLDVSPFAKRHPGGARLIINALGTDVTSEIAG 189
            +PRT +LPIY++  FN+K+L+G+SW++VD AVLDVS FA RHPGG RLI+NALGTDVT E+ G
Sbjct:  878 IPRTLDLPIYSVAAFNDKVLSGQSWLMVDEAVLDVSDFAHRHPGGRRLILNALGTDVTQELLG 940
[Close]
BLAST of mRNA_A-nodosum_M_contig913.2.1 vs. uniprot
Match: D8LFE2_ECTSI (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE2_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 3.420e-20
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   25 IYTLEEFNNKLLNGRSWVIVDGAVLDVSPFAKRHPGGARLIINALGTDVTSEIAG 189
            +Y+L EFN K+LN +SW+ VD A+LDVS FA RHPGG RLI+NALGTDVT+EI G
Sbjct:    1 MYSLAEFNEKVLNSQSWLFVDSAILDVSEFAARHPGGRRLILNALGTDVTAEILG 55
[Close]
BLAST of mRNA_A-nodosum_M_contig913.2.1 vs. uniprot
Match: A0A835YL09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL09_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.120e-12
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 MPRTEELPIYTLEEFNNKLLNGRSWVIVDGAVLDVSPFAKRHPGGARLIINALGTDVTSEIAG 189
            M R   LP YT+EEFN+++L G  W+IV+ AV++V  + K HPGG++++  ++G DVT EI G
Sbjct:  332 MIRQLNLPTYTMEEFNDRVLQGEKWLIVNDAVVNVEEYQKVHPGGSKVMKESIGLDVTKEILG 394
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig913.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB74_ECTSI1.090e-2784.13Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JBL8_9PHAE8.530e-2676.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX04_ECTSI2.950e-2574.60Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
D8LFE6_ECTSI9.080e-2471.43Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JX59_9PHAE1.690e-2366.25Cytochrome b5 heme-binding domain-containing prote... [more]
D7G7J2_ECTSI1.600e-2066.67Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI2.180e-2065.08Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JQ31_9PHAE2.970e-2066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFE2_ECTSI3.420e-2069.09Cytochrome b5 heme-binding domain-containing prote... [more]
A0A835YL09_9STRA5.120e-1247.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig913contigA-nodosum_M_contig913:53053..53411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FX04
PFAMsCyt-b5,Cytochrom_B561,DOMON,NAD_binding_1
Model size189
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.84e-26
EggNOG OGs2D0T2@1|root,2SFBV@2759|Eukaryota
DescriptionDOMON domain
Cds size189
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870367.6682494-CDS-A-nodosum_M_contig913:53052..531061680870367.6682494-CDS-A-nodosum_M_contig913:53052..53106Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig913 53053..53106 +
1680870367.6825967-CDS-A-nodosum_M_contig913:53276..534111680870367.6825967-CDS-A-nodosum_M_contig913:53276..53411Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig913 53277..53411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig913.2.1prot_A-nodosum_M_contig913.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig913 53053..53411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig913.2.1

>prot_A-nodosum_M_contig913.2.1 ID=prot_A-nodosum_M_contig913.2.1|Name=mRNA_A-nodosum_M_contig913.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
MPRTEELPIYTLEEFNNKLLNGRSWVIVDGAVLDVSPFAKRHPGGARLII
NALGTDVTSEIAG
back to top

mRNA from alignment at A-nodosum_M_contig913:53053..53411+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig913.2.1 ID=mRNA_A-nodosum_M_contig913.2.1|Name=mRNA_A-nodosum_M_contig913.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=359bp|location=Sequence derived from alignment at A-nodosum_M_contig913:53053..53411+ (Ascophyllum nodosum dioecious)
ATGCCGAGAACGGAAGAACTTCCAATCTACACGTTGGAAGAATTCAATAA
CAAGGTGATACCACGGTGTTCTTTTGTCTTCAACAAAATATCTTTCCTAA
AGTCATTTTGCTGGTACGGACAGGCAAATGCTGACGTGGGCGAGTGAGCG
ATTTACCGTATGCCTAACTCTACAGCGTACCGATTGGTTTATCGGTGCGG
CACGGTTCTCCCCTTTTACGGCAGCTCTTGAACGGGCGTTCCTGGGTAAT
CGTAGACGGGGCGGTTCTCGACGTTTCCCCTTTCGCTAAGCGGCACCCGG
GCGGCGCACGTCTTATCATTAACGCTCTGGGTACGGATGTAACGTCGGAA
ATAGCTGGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig913:53053..53411+

>mRNA_A-nodosum_M_contig913.2.1 ID=mRNA_A-nodosum_M_contig913.2.1|Name=mRNA_A-nodosum_M_contig913.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig913:53053..53411+ (Ascophyllum nodosum dioecious)
ATGCCGAGAACGGAAGAACTTCCAATCTACACGTTGGAAGAATTCAATAA
CAAGCTCTTGAACGGGCGTTCCTGGGTAATCGTAGACGGGGCGGTTCTCG
ACGTTTCCCCTTTCGCTAAGCGGCACCCGGGCGGCGCACGTCTTATCATT
AACGCTCTGGGTACGGATGTAACGTCGGAAATAGCTGGG
back to top