mRNA_A-nodosum_M_contig913.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig913.1.1
Unique NamemRNA_A-nodosum_M_contig913.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig913.1.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.230e-22
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    7 PPFVFKAVDEAILSKIQQRYDSVHTRLISLYPDDPAKRAHIIRQMNLSVQLLRENGTKEWSLP 195
            PPF  K +D+A L KIQQRYDSVH RL +LYPDDPAKR   IR+MNLSVQLLRE GTK+W LP
Sbjct:  109 PPFQLKDIDKATLDKIQQRYDSVHPRLEALYPDDPAKRNEYIREMNLSVQLLRERGTKDWDLP 171
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BLAST of mRNA_A-nodosum_M_contig913.1.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.160e-20
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    7 PPFVFKAVDEAILSKIQQRYDSVHTRLISLYPDDPAKRAHIIRQMNLSVQLLRENGTKEWSLP 195
            PPF  KAV++  L KIQQRYDSV  RL +L+PDDPAKR+ I+R+MNLSV+LLRE GTK+W LP
Sbjct:   58 PPFELKAVEQDTLVKIQQRYDSVVPRLEALFPDDPAKRSEIVREMNLSVELLRETGTKDWDLP 120
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig913.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIQ0_9PHAE1.230e-2273.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYY8_ECTSI1.160e-2068.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig913contigA-nodosum_M_contig913:7032..7560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size198
Hectar predicted targeting categoryother localisation
Exons2
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870367.6156743-CDS-A-nodosum_M_contig913:7031..71371680870367.6156743-CDS-A-nodosum_M_contig913:7031..7137Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig913 7032..7137 +
1680870367.6318583-CDS-A-nodosum_M_contig913:7468..75601680870367.6318583-CDS-A-nodosum_M_contig913:7468..7560Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig913 7469..7560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig913.1.1prot_A-nodosum_M_contig913.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig913 7032..7560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig913.1.1

>prot_A-nodosum_M_contig913.1.1 ID=prot_A-nodosum_M_contig913.1.1|Name=mRNA_A-nodosum_M_contig913.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=66bp
MRPPFVFKAVDEAILSKIQQRYDSVHTRLISLYPDDPAKRAHIIRQMNLS
VQLLRENGTKEWSLP*
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mRNA from alignment at A-nodosum_M_contig913:7032..7560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig913.1.1 ID=mRNA_A-nodosum_M_contig913.1.1|Name=mRNA_A-nodosum_M_contig913.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=529bp|location=Sequence derived from alignment at A-nodosum_M_contig913:7032..7560+ (Ascophyllum nodosum dioecious)
ATGCGCCCCCCGTTCGTCTTCAAGGCGGTTGACGAGGCGATCCTCTCGAA
GATTCAGCAACGCTACGACAGCGTGCACACCAGGTTGATCTCGCTGTATC
CCGATGGTGAGAGATGGTTCCGCTCCTTCGCTGTAAAGTGCTTGCTGATT
CGCTGAATGTAGGTAGGTAACCCTAACCCTTGTCATTTCGCTGGTTGTCT
GCGCGTTGACCTCCAATTGTTTTGTGTTTTTTCGCATGCATGCTCCCCAT
TCCCTACCGACCGCTGTTATACCACTGTAGCCAGAGATGCGGTTAGCATA
TACAGAACATGTGCCAATCTCGACTAAAGTAGGCATGTCCTTCCTTACCA
CCCGAGAGTCAATATCCTCCTGCACGGGCATGTCGTTTTGCCCACTTACA
CCAATTTTGTTCTTCGTTTCCAATCGCTTCGGTGCAGACCCTGCTAAAAG
AGCTCACATCATACGACAGATGAACCTCTCCGTCCAACTTTTGCGTGAGA
ATGGAACGAAGGAGTGGAGTCTTCCCTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig913:7032..7560+

>mRNA_A-nodosum_M_contig913.1.1 ID=mRNA_A-nodosum_M_contig913.1.1|Name=mRNA_A-nodosum_M_contig913.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=198bp|location=Sequence derived from alignment at A-nodosum_M_contig913:7032..7560+ (Ascophyllum nodosum dioecious)
ATGCGCCCCCCGTTCGTCTTCAAGGCGGTTGACGAGGCGATCCTCTCGAA
GATTCAGCAACGCTACGACAGCGTGCACACCAGGTTGATCTCGCTGTATC
CCGATGACCCTGCTAAAAGAGCTCACATCATACGACAGATGAACCTCTCC
GTCCAACTTTTGCGTGAGAATGGAACGAAGGAGTGGAGTCTTCCCTAG
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