mRNA_A-nodosum_M_contig9116.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9116.1.1
Unique NamemRNA_A-nodosum_M_contig9116.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9116.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9116contigA-nodosum_M_contig9116:16590..18157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size320
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870366.3741684-UTR-A-nodosum_M_contig9116:16589..165931680870366.3741684-UTR-A-nodosum_M_contig9116:16589..16593Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9116 16590..16593 -
1680870366.4100041-UTR-A-nodosum_M_contig9116:18129..181571680870366.4100041-UTR-A-nodosum_M_contig9116:18129..18157Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9116 18130..18157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870366.3871567-CDS-A-nodosum_M_contig9116:16593..166671680870366.3871567-CDS-A-nodosum_M_contig9116:16593..16667Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9116 16594..16667 -
1680870366.3997505-CDS-A-nodosum_M_contig9116:17915..181291680870366.3997505-CDS-A-nodosum_M_contig9116:17915..18129Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9116 17916..18129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9116.1.1prot_A-nodosum_M_contig9116.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9116 16594..18129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9116.1.1

>prot_A-nodosum_M_contig9116.1.1 ID=prot_A-nodosum_M_contig9116.1.1|Name=mRNA_A-nodosum_M_contig9116.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=96bp
MDGYERSWTRLPPLADWRGRFLLVATPRLPRARAAATTLRVAAATRKGPP
SRRPRTATAIHGITAAIIRTKGKAEFRDRGTCCFQDPALGLRRLF*
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mRNA from alignment at A-nodosum_M_contig9116:16590..18157-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9116.1.1 ID=mRNA_A-nodosum_M_contig9116.1.1|Name=mRNA_A-nodosum_M_contig9116.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1568bp|location=Sequence derived from alignment at A-nodosum_M_contig9116:16590..18157- (Ascophyllum nodosum dioecious)
GAGCGCGCGTACGCCACCCCAGCGGGTCATGGATGGGTACGAGAGGTCCT
GGACGAGGCTGCCGCCCCTCGCCGACTGGCGCGGTCGGTTTCTTCTGGTA
GCGACACCGCGTCTTCCGCGCGCCCGCGCCGCCGCGACGACCCTTCGAGT
GGCCGCGGCAACTCGAAAAGGGCCACCCTCCCGGAGACCTCGGACAGCGA
CGGCCATCCACGGCATCACGGCCGCAATCATCCGGACAAAAGGCAAGTAA
CCGCGCGAATCTATCACGCGTCGGACGAAGATAGTGATGCCCCCTCTTTT
CCCCCACAAATTTTTCGGTACCGTAACCGCTCGCGCCGACCGCATCCGCG
AATAGCAACCCCTCGCGCCGATCGCGCCACCCCCGCTACCAACGATTCCT
TTTCGCTACAAAAGATCGTTGAAGCAGCCACCGCTGCAGCCATTGCCGCT
GTAGACCACCACCTTGCCCATTTAGGGTTAACCACGCGGCCTGAACCAAT
CCCGTCTCTTGGTACTGTACACTACCCTCGCCCGCACGCGGCCCCACGGC
TGGGAACCGTATCATTGCCTGATACTGTACACCACCCCCATTCTCACGCG
ACGCCGCGGTCTGATCCCACCCCATCGCACGATGCTGGACTCCATCGTCC
CCATGCGGCCCCGCGGCCTACAACCGCCTCGTTACATGATACTGTACTCC
AACCGCGGCCTGCAACCGCCCCGTTACATGATACTGTACTCCAACCGCGG
CCTGCAACCGCCTCGTTACATGATACTGTACTCCAACCGCGGCCTGCGAC
CGCCTCGTTACATGATACTGTACCCCAACCGCGGCCTGCAACCGCCTCGT
TACATGATACTGTAACCCACCATCCCCCTCGTGCGATCCCTGCGCCACTA
GCACCGATCGCCCCGTCGATAGGTTCGGCGGCCCCAATAACAGAACCCTC
CGCGATTCCAGCACGTGCTACTTGCCCTCCCGGAGGCTCCACGGCTGCGA
TCCCGACACATATTGGCTACCCCATGCAGCCCCCTGTTCCCACCACTCAC
CCCGCGATGTCGATTGCCCCTCCCCCTGCGGGCTCTTTCCCGCACGGCCC
GCCTGATGAACGTATTCTATACGATGACAGCTCGTCTCAGACGTCGAGCA
ACTTGAGCCCTTCGGGCATCCGCGCCGATTTTGTAGCACACATGCAGGCG
GCGTACCGTACACTTGACATGCGCCGCGTTCCCCGAATTCAGCCGCTTCA
GTTCCCCCCCTCAGCGGACAGAACTGCCGCCACCCAATTATTGATTCGCT
CTATGCGCGACGCACTTTCTGGGATCTTTGATGTCGCCGATCCTACCGGA
ACGGTTACAATGGATTCTCCCGTTTGGGTATCGGGATGGAACGCACCCTC
CTCAAACTCACCAAAGCAGCTATTAATGCCAACCGAGATGACACCCATGA
CTTGCACCGACTTGTTGACGACCTGTTTTCGCAACTACAGGAAAGGCTGA
GTTCCGGGACCGGGGGACCTGCTGCTTTCAAGACCCTGCTCTCGGACTTC
GCCGACTATTTTGATCGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9116:16590..18157-

>mRNA_A-nodosum_M_contig9116.1.1 ID=mRNA_A-nodosum_M_contig9116.1.1|Name=mRNA_A-nodosum_M_contig9116.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at A-nodosum_M_contig9116:16590..18157- (Ascophyllum nodosum dioecious)
ATGGATGGGTACGAGAGGTCCTGGACGAGGCTGCCGCCCCTCGCCGACTG
GCGCGGTCGGTTTCTTCTGGTAGCGACACCGCGTCTTCCGCGCGCCCGCG
CCGCCGCGACGACCCTTCGAGTGGCCGCGGCAACTCGAAAAGGGCCACCC
TCCCGGAGACCTCGGACAGCGACGGCCATCCACGGCATCACGGCCGCAAT
CATCCGGACAAAAGGAAAGGCTGAGTTCCGGGACCGGGGGACCTGCTGCT
TTCAAGACCCTGCTCTCGGACTTCGCCGACTATTTTGA
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