mRNA_A-nodosum_M_contig910.24.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig910.24.1
Unique NamemRNA_A-nodosum_M_contig910.24.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig910.24.1 vs. uniprot
Match: W7TMY0_9STRA (Folylpolyglutamate synthetase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMY0_9STRA)

HSP 1 Score: 124 bits (311), Expect = 4.350e-28
Identity = 65/130 (50.00%), Postives = 84/130 (64.62%), Query Frame = 3
Query:  318 GKGSVCELLRSSLHAHGRCVGTFTSPHVHTIRERIRVGESLIPRDALIR------HTMTLQGVFHENP------WLLFFDKLLAIALRFFAEVGIDTLVLEVGIGGKYDSTNFFRRPAIVSVITSISYDH 671
            GKG+VCEL+R  L AHG+ VGTFTSPH+HT+RERIRV + LI R   +R        +   G+    P      W  FFDK+L +AL +F E  ++ ++LEVGIGG+YD TNF   P IV V+TS+S DH
Sbjct:  157 GKGTVCELVRCGLIAHGKRVGTFTSPHLHTVRERIRVNDVLISRADFVRLWHKVHAALVPSGIDDAGPVRCEGTWANFFDKVLGVALAWFVEQQVEYIILEVGIGGRYDPTNFIAHP-IVCVVTSVSEDH 285          
BLAST of mRNA_A-nodosum_M_contig910.24.1 vs. uniprot
Match: A0A4D9D7G1_9STRA (ABC transporter domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7G1_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.520e-27
Identity = 65/130 (50.00%), Postives = 83/130 (63.85%), Query Frame = 3
Query:  318 GKGSVCELLRSSLHAHGRCVGTFTSPHVHTIRERIRVGESLIPRDALIR------HTMTLQGVFHENP------WLLFFDKLLAIALRFFAEVGIDTLVLEVGIGGKYDSTNFFRRPAIVSVITSISYDH 671
            GKG+VCEL+R  L AHG+ VGTFTSPH+HT+RERIRV + LI R   +R        +   G     P      W  FFDK+L +AL +F E  ++ ++LEVGIGG+YD TNF   P IV V+TS+S DH
Sbjct:  741 GKGTVCELVRCGLIAHGKRVGTFTSPHLHTVRERIRVNDVLISRADFVRLWHKVHAALVPSGSDDAGPARCGGTWANFFDKVLGVALAWFVEQQVEYIILEVGIGGRYDPTNFIAHP-IVCVVTSVSEDH 869          
BLAST of mRNA_A-nodosum_M_contig910.24.1 vs. uniprot
Match: A0A7S3HLR6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLR6_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.360e-27
Identity = 63/142 (44.37%), Postives = 82/142 (57.75%), Query Frame = 3
Query:  318 GKGSVCELLRSSLHAHGRCVGTFTSPHVHTIRERIRVGESLIPRDALIRHTMTLQGVFHENPWLLFFDKLLAIALRFFAEVGIDTLVLEVGIGGKYDSTNFFRRPAIVSVITSISYDHQVSFVTCRISTFQLEKGFVKSAKH 743
            GKGS  E + SSL  +G  VG FTSPH+HT RER++V   LI    +IR    +       PW++FFD LLA+A+R+F E  +  ++LE GIGG+YD+TNF   PA   VITSIS DHQ             + G +K   H
Sbjct:   94 GKGSAVEYISSSLIGNGNSVGIFTSPHMHTARERVKVNRELIAHSDMIRLGNEVLAELSPQPWVVFFDLLLALAVRYFNEKNVQYMILESGIGGRYDTTNFVDNPA-ACVITSISLDHQALLGDTVEEIAYQKAGIIKPKSH 234          
BLAST of mRNA_A-nodosum_M_contig910.24.1 vs. uniprot
Match: A0A835Z390_9STRA (Mur ligase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z390_9STRA)

HSP 1 Score: 110 bits (276), Expect = 8.690e-27
Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 3
Query:  384 FTSPHVHTIRERIRVGESLIPRDALIRHTMTLQGVFHENPWLLFFDKLLAIALRFFAEVGIDTLVLEVGIGGKYDSTNFFRRPAIVSVITSISYDHQ 674
            FTSPH+HT+RERIR+G  LIPR  L R T +L   F   PW++FFD+LLA+AL +F E G + ++LE G+GG+YD TN    PA+  ++T+IS DH+
Sbjct:    1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALC-IVTNISLDHE 96          
BLAST of mRNA_A-nodosum_M_contig910.24.1 vs. uniprot
Match: A0A7S3NJD0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJD0_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.950e-23
Identity = 61/125 (48.80%), Postives = 80/125 (64.00%), Query Frame = 3
Query:  318 GKGSVCELLRSSLHAHGRCVGTFTSPHVHTIRERIRVGESLIPRDALIR----HTMTLQGVFHENPW-LLFFDKLLAIALRFFAEVGIDTLVLEVGIGGKYDSTNFFRRPA--IVSVITSISYDH 671
            GKGSVCE +R+ L   G  VGTFTSPH+H+ RERIR+G  LI  + L          +Q    ++ W  +FFD+LLA AL +F+    + +V+E GIGGKYDSTNF + P    V+VITS+S DH
Sbjct:   63 GKGSVCESIRARLVKAGLRVGTFTSPHLHSCRERIRIGSQLISANDLTEVGSAALQLIQNAEDKSEWGAVFFDRLLAAALIYFSTERCEIVVMETGIGGKYDSTNFIQDPQQLAVAVITSLSLDH 187          
BLAST of mRNA_A-nodosum_M_contig910.24.1 vs. uniprot
Match: A0A7S2RCR3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCR3_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.000e-21
Identity = 53/118 (44.92%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  318 GKGSVCELLRSSLHAHGRCVGTFTSPHVHTIRERIRVGESLIPRDALIRHTMTLQGVFHENPWLLFFDKLLAIALRFFAEVGIDTLVLEVGIGGKYDSTNFFRRPAIVSVITSISYDH 671
            GKGSVC  + + L   G   G FTSPHVH  RERI+VG   I     +              W++ FD+ LA+AL  FA  G+  +VLE GIGG++DSTNF  +P  V V+T IS+DH
Sbjct:   87 GKGSVCSCIHAGLCESGVAAGLFTSPHVHVFRERIQVGRERITETDFLEVWDACAPALASEAWMVPFDRYLAVALVHFARRGVQVVVLETGIGGRFDSTNFVSQPE-VCVLTRISHDH 203          
BLAST of mRNA_A-nodosum_M_contig910.24.1 vs. uniprot
Match: A0A7C7RT57_9CHLR (Bifunctional folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7RT57_9CHLR)

HSP 1 Score: 102 bits (253), Expect = 7.560e-21
Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = 3
Query:  318 GKGSVCELLRSSLHAHGRCVGTFTSPHVHTIRERIRVGESLIPRDALIRHTMTLQGVFHENPWLLFFDKLLAIALRFFAEVGIDTLVLEVGIGGKYDSTNFFRRPAIVSVITSISYDH 671
            GKGS   ++ S+L A G   G +TSPH+HT RERIRVG  LI R+ ++     L+ +  + P    F+ + A+A  +FA  G++ LV EVG+GG+ D+TN  +    VSVITS+S DH
Sbjct:   33 GKGSTAAMVESALRAGGYRTGLYTSPHLHTFRERIRVGGGLISREEVVALVEELRSLIAQVPGTTTFEAITAMAFAYFARQGVEMLVAEVGLGGRLDATNVLKPE--VSVITSLSLDH 148          
BLAST of mRNA_A-nodosum_M_contig910.24.1 vs. uniprot
Match: A0A8J2S6F4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S6F4_9STRA)

HSP 1 Score: 102 bits (253), Expect = 7.890e-21
Identity = 64/123 (52.03%), Postives = 77/123 (62.60%), Query Frame = 3
Query:  318 GKGSVCELLRSSLHAHGRCVGTFTSPHVHTIRERIRVGESLIPRDALIRH---TMTLQGVFHENPW-LLFFDKLLAIALRFFAEVGIDTLVLEVGIGGKYDSTNFFRRPAI-VSVITSISYDH 671
            GKGSV ELLRS+L   G  VG FTSPH+H  RERIRVG   I  +AL R+    + L      + W  +FFD+LLA AL  F E     LVLE G+GG +DSTNFF    + ++VITSIS DH
Sbjct:   62 GKGSVSELLRSAL---GPKVGCFTSPHLHGCRERIRVGAEPISVEALRRNGEKALDLARKLEADEWGCVFFDRLLATALLHFGEEACPRLVLEAGVGGVHDSTNFFTDQELELAVITSISLDH 181          
BLAST of mRNA_A-nodosum_M_contig910.24.1 vs. uniprot
Match: A0A3M1LWG8_9CHLR (Bifunctional folylpolyglutamate synthase/dihydrofolate synthase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1LWG8_9CHLR)

HSP 1 Score: 101 bits (251), Expect = 1.370e-20
Identity = 54/118 (45.76%), Postives = 74/118 (62.71%), Query Frame = 3
Query:  318 GKGSVCELLRSSLHAHGRCVGTFTSPHVHTIRERIRVGESLIPRDALIRHTMTLQGVFHENPWLLFFDKLLAIALRFFAEVGIDTLVLEVGIGGKYDSTNFFRRPAIVSVITSISYDH 671
            GKGSV  +  S+L A G   G +TSPH+HT RERIRV        A+      LQ +  ++P + +F+ + AIA  +FAEVG++  V+EVG+GG+ D+TN       VSVITS+SYDH
Sbjct:   11 GKGSVAAMCESALRASGVHTGLYTSPHLHTFRERIRVDGWPADPQAIADLVSRLQHLLPDHPGVTWFEAVTAIAFLYFAEVGVEFAVIEVGLGGRLDATNVITPQ--VSVITSLSYDH 126          
BLAST of mRNA_A-nodosum_M_contig910.24.1 vs. uniprot
Match: A0A0F6YI05_9DELT (Dihydrofolate synthase/folylpolyglutamate synthase n=1 Tax=Sandaracinus amylolyticus TaxID=927083 RepID=A0A0F6YI05_9DELT)

HSP 1 Score: 100 bits (250), Expect = 1.700e-20
Identity = 57/151 (37.75%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  318 GKGSVCELLRSSLHAHGRCVGTFTSPHVHTIRERIRVGESLIPRDALIRHTMTLQGVFH--ENPWLLFFDKLLAIALRFFAEVGIDTLVLEVGIGGKYDSTNFFRRPAIVSVITSISYDHQVSFVTCRISTFQLEKGFVKSAKHRTIYGKI 764
            GKGSVC +L   L A G   G +TSPH+H+ RERIRV    + RD ++R    ++      + P L FF+    IAL  F E   D +VLEVG+GG+ D+TN    P + + ITSI+ DHQ  ++   I+    EK  +   +   + G++
Sbjct:   49 GKGSVCAMLERVLRASGLRTGLYTSPHLHSFRERIRVDGEPVSRDEVVRRASEIRTTVEAPDAPQLTFFEVTTLIALEAFREARCDVVVLEVGLGGRLDATNVIDVP-LATAITSIALDHQ-QYLGSTITEIAREKAGIAKPRVPLVLGRV 197          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig910.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TMY0_9STRA4.350e-2850.00Folylpolyglutamate synthetase n=1 Tax=Nannochlorop... [more]
A0A4D9D7G1_9STRA2.520e-2750.00ABC transporter domain-containing protein n=2 Tax=... [more]
A0A7S3HLR6_9STRA3.360e-2744.37Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A835Z390_9STRA8.690e-2752.58Mur ligase (Fragment) n=1 Tax=Tribonema minus TaxI... [more]
A0A7S3NJD0_9STRA1.950e-2348.80Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2RCR3_9STRA3.000e-2144.92Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7C7RT57_9CHLR7.560e-2144.07Bifunctional folylpolyglutamate synthase/dihydrofo... [more]
A0A8J2S6F4_9STRA7.890e-2152.03Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A3M1LWG8_9CHLR1.370e-2045.76Bifunctional folylpolyglutamate synthase/dihydrofo... [more]
A0A0F6YI05_9DELT1.700e-2037.75Dihydrofolate synthase/folylpolyglutamate synthase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig910contigA-nodosum_M_contig910:162098..163932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog509191.AEDB02000104_gene3903
Preferred namefolC
PFAMsMur_ligase_C,Mur_ligase_M
Model size918
Max annot lvl186801|Clostridia
KEGG rclassRC00064,RC00090,RC00162
KEGG koko:K11754
KEGG ReactionR00942,R02237,R04241
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG ModuleM00126,M00841
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.86e-09
EggNOG OGsCOG0285@1|root,COG0285@2|Bacteria,1TPX5@1239|Firmicutes,247PC@186801|Clostridia,3WGH0@541000|Ruminococcaceae
EC6.3.2.12,6.3.2.17
DescriptionBelongs to the folylpolyglutamate synthase family
Cds size300
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870365.4161267-UTR-A-nodosum_M_contig910:162097..1624151680870365.4161267-UTR-A-nodosum_M_contig910:162097..162415Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig910 162098..162415 +
1680870365.4300401-UTR-A-nodosum_M_contig910:162757..1629091680870365.4300401-UTR-A-nodosum_M_contig910:162757..162909Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig910 162758..162909 +
1680870365.472245-UTR-A-nodosum_M_contig910:163784..1639321680870365.472245-UTR-A-nodosum_M_contig910:163784..163932Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig910 163785..163932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870365.4430146-CDS-A-nodosum_M_contig910:162909..1629961680870365.4430146-CDS-A-nodosum_M_contig910:162909..162996Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig910 162910..162996 +
1680870365.458124-CDS-A-nodosum_M_contig910:163571..1637841680870365.458124-CDS-A-nodosum_M_contig910:163571..163784Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig910 163572..163784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig910.24.1prot_A-nodosum_M_contig910.24.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig910 162910..163784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig910.24.1

>prot_A-nodosum_M_contig910.24.1 ID=prot_A-nodosum_M_contig910.24.1|Name=mRNA_A-nodosum_M_contig910.24.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=100bp
MTLQGVFHENPWLLFFDKLLAIALRFFAEVGIDTLVLEVGIGGKYDSTNF
FRRPAIVSVITSISYDHQVSFVTCRISTFQLEKGFVKSAKHRTIYGKIG*
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mRNA from alignment at A-nodosum_M_contig910:162098..163932+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig910.24.1 ID=mRNA_A-nodosum_M_contig910.24.1|Name=mRNA_A-nodosum_M_contig910.24.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1835bp|location=Sequence derived from alignment at A-nodosum_M_contig910:162098..163932+ (Ascophyllum nodosum dioecious)
AAAGGAATGGCTGAATCCTTCTCGCGAGAAAAATTAAGGCACGCACCGCA GAAAGAAGGTGGATGAGAAATCCTGTGTGACCTTCCTCCTGTGTGACCCT GGCTGGTACGTCCAACGAACTTGATGTCCAGAATGAATTGGAAGAAAACA CACACACTGGCCCTGTGCCGGCGTATTATCATCGGTACACAATGGCGCGG CCTGACAAACTCGGGACTGACCCAATGGCAGTTGACGGTATAGATGGACG CCGTCGCGGAAAGCGGGAGGAATCCCGAGAGTAAACACCAGATTCAGCCT GAGTGCGCGAGTGAGCGGGCTGACGAGGGACGGAACGGCCGAATCCATCT CGCGAAACCACGTTCTCAGGCGCGAACGGAGAAAGGGTAAAAATAGGATT GGTAACCATATCAGGATGATCCATACCCTGCTGAAGGTGCTGACTATACC TACAAATGCCGTCGGGGGGAGAAGTGTGGAAATGTTTAGGTGGAAACGTT GACTGCTGCAAGGGAAACATTGCAACGAGACCTTGAGAAACCTCGAGGAC GAGCACTCTGTGTTGTAGTATAATAGGACCTTATCTACACTTTTCTCAGA CTCGGAGGTACTTGACTCGCTGAATTTCTATATAATTTGTGCATGTTCGT GATAAAGCAGGAAAGGGATCTGTGTGTGAGCTGCTTAGGTCAAGCCTTCA TGCACATGGTCGGTGCGTCGGGACGTTTACCAGTCCCCATGTGCATACTA TTCGGGAGCGCATCAGGGTTGGGGAGTCGCTGATTCCTAGGGATGCTCTG ATTCGGCACACAATGACCTTGCAGGGAGTGTTCCATGAGAACCCCTGGCT GTTATTTTTCGACAAGCTTCTGGCAATCGCTTTGCGATTTTTCGCTGAGG TGTGATGTCTCGATTCAGACTTCTATGACCCCATAGTGCACAAGGTGCAT TCCAATGTATGCACGGGCAGACAATGCAACTAACTTGTACTACGGCTGTA GTGTATACTTCATTCAATGCACGTGTTTGGTTGTTGTTGAGCTTATCTGC CGTATGCCTTGTTGATAACGGTGCAACCGCGGGATCTTCCCGTGGGTCCT CTAAGCCTCCGTTCTAAGGCGGTATGAAACAAATTCGACGCTCAACTTGA GTCTCGCGATGTACAGTATGAGACGGAACAGTCAACAAAGATTTTCTTCT TTGATTCACGAGTCTTTCGGTTTCACCTAACTTGAGAGGCAAGAATCTAA TGAGCAACTACGATGTACGTTCTGGTGGTTGCAGTCGGTTTAGTTTATAC AACTCCACTTCTACAGCCCAAGCAGTTCAGTTGCACGTTCAGTTTTTTCA GCCGGTAACCGGAAATCAATGTTTGAATTCTCCCTTCACGTCCAAGCCCC AGCGATATGTTCTATCAATATATTTCTCTAGATAATCCTCGATTTTAAGT ACCATCACACGCAATTCCACTCAGGTCGGTATTGATACGTTGGTGTTGGA GGTTGGTATCGGTGGCAAGTATGACTCCACCAACTTCTTCAGGCGCCCGG CGATCGTCAGTGTCATCACAAGCATCAGTTACGATCACCAGGTCAGTTTT GTAACGTGCCGAATCTCTACGTTCCAGCTTGAAAAAGGGTTCGTTAAGTC TGCGAAACATAGAACTATATATGGTAAGATAGGTTAGCTATCGCTATACG CTCGCTAAAGGATAGGCCTGTAACTATCGTCAGCTTAACACGTTGGTGTC ATGTATGGTTGGTGTTTGGCTTGTTGAACTGCCGTCGTCCTCAATAATGT ACTGGAAAGTGCCACGCCTGATTGTAAAGAAAACA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig910:162098..163932+

>mRNA_A-nodosum_M_contig910.24.1 ID=mRNA_A-nodosum_M_contig910.24.1|Name=mRNA_A-nodosum_M_contig910.24.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at A-nodosum_M_contig910:162098..163932+ (Ascophyllum nodosum dioecious)
ATGACCTTGCAGGGAGTGTTCCATGAGAACCCCTGGCTGTTATTTTTCGA
CAAGCTTCTGGCAATCGCTTTGCGATTTTTCGCTGAGGTCGGTATTGATA
CGTTGGTGTTGGAGGTTGGTATCGGTGGCAAGTATGACTCCACCAACTTC
TTCAGGCGCCCGGCGATCGTCAGTGTCATCACAAGCATCAGTTACGATCA
CCAGGTCAGTTTTGTAACGTGCCGAATCTCTACGTTCCAGCTTGAAAAAG
GGTTCGTTAAGTCTGCGAAACATAGAACTATATATGGTAAGATAGGTTAG
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