mRNA_A-nodosum_M_contig91.23.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig91.23.1
Unique NamemRNA_A-nodosum_M_contig91.23.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig91.23.1 vs. uniprot
Match: A0A2N9IUC8_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUC8_FAGSY)

HSP 1 Score: 332 bits (852), Expect = 3.970e-99
Identity = 252/747 (33.73%), Postives = 377/747 (50.47%), Query Frame = 1
Query:    4 TPQYNGVAERALGILRE--KAIILMEELDDVINVPREKLWAQAILFACDVTNKSVTTSTDGSKSPYELWFGNFPTADHLRPFGAVGYARQGVREHKMAPKGEKCVFMGIPR--------NFPLARNIVERQAV----QWIDGPKKTGGDGTGSDDRGMK--SAGDEIIVERGTPQLNVQE-------LGQEQQLTLHEHETQKALSELEGDALACDDGGPMAMQATLDIPEPRNRRQAMESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDGKVEKYKCRLVAQEFWQVEGVHYTEKYSPTPATASIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIP----------------------------------EEFQEFPGAQAKADPCVFRKVVDGEVEMVVVVHIDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTK--IPAASGVSTLSKTDEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKEWGITYGGQGCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEALFLRQ-VQEF-MEPSMRVGAVNVFKDNEGANKLATNKHASRRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDSQKFYKH 2061
            TPQ+NGVAER    L +  ++++ M EL           W  A+  A  + N+  T S   +  PYELW G  P+ +H++ +G   + R+   + K+ P+ ++C+F+G P+        N    +  V R A+     +     +T       +DR M   S  +E  V   T   N+QE       +    +LTL        + ++E D     D  P+  Q            +AM  ++ + W+KA E+EM  M  N V+  V +P+    +G K +YKRK+G  GKVE YK RLVA+ + Q  G+ Y E +SP     SIR+LL++AA  D E+   D + AFL  +I EEIY++ P                                  E  + F  +Q   +PCV++KV  G +   +++++DDIL    D   M      L   F +KD+G+A Y +G  + R+RK R L   Q  Y++ ++ RF ++ + K   P   GV  LSK   P+  EE+E+MR  PY  AVG+LM+    TRPDI  AV  V+R+  NPGP H  AV  I +YL  TK + + +G +  +L ++ YTDSDF + +D R+S+SG V  L KGAISW S  Q+ TA  T EAEY+A SE  KEA+++R+ +QE  + PS+    + +  DN GA   A    A +RTKHI+ + HL+RD      V + ++ S +  AD  TK L  + F KH
Sbjct:  114 TPQHNGVAERRNRTLLDMVRSMMSMSELP-------VSFWGYALETAIYLLNRVPTKSVPNT--PYELWTGKKPSLNHIKIWGCPSHVRKSNVD-KLGPRSDRCLFVGYPKMSTGFYFYNPSEQKVFVSRNAIFLEEDYSLNESRTKVTLEEQNDRPMTVPSENNEEQVIVPTEPSNMQEPRRSTRIIRPPVRLTLLNE-----IYQMESDGF---DNDPVTYQ------------EAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKVRLVAKGYTQKAGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGFISHGQESKVCKLMKSIYGLKQASRSWNIRFDEAIKSFGFSQNIDEPCVYKKV-SGRIITFLILYVDDILLIGNDVGAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVH-LSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSK--DLNIQGYTDSDFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTIEAEYIAASEAAKEAVWIRKFIQELGVVPSIE-SPITIHCDNNGAIANAVEPRAHKRTKHIERRFHLIRDIIHRGDVEITHIASANNVADPFTKALPQKVFEKH 825          
BLAST of mRNA_A-nodosum_M_contig91.23.1 vs. uniprot
Match: A0A438FEW0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FEW0_VITVI)

HSP 1 Score: 321 bits (822), Expect = 4.950e-92
Identity = 237/760 (31.18%), Postives = 380/760 (50.00%), Query Frame = 1
Query:    4 TPQYNGVAERALGILREKAIILMEELDDVINVPREKLWAQAILFACDVTNKSVTTSTDGSKSPYELWFGNFPTADHLRPFGAVGYARQGVREHKMAPKGEKCVFMGIPRNFPLARNIVERQA-------------------------VQWIDG-----------PKKTGGDGTGSDDRGMKSAGDEIIVER-GTPQLNVQELGQEQQLTLHEHETQKALSELEGDALACDDGGPMAMQATLDIPEPRNRRQAMESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDG-KVEKYKCRLVAQEFWQVEGVHYTEKYSPTPATASIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQE-------------------FPGAQAKA---------------DPCVFRKVVDGEVEMVVVVHIDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKIPAASGVS-TLSKTDEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKEWGITYGGQG-CELCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEALFLRQVQEFMEPSMRVGAVNVFKDNEGANKLATNKHASRRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDSQKFYKH 2061
            TPQ NG+AER    + E+   ++       +   +  WA+A   A  + N+S +++    K+P E W G      HL+ FG   Y     +  K+ P+  KC+F+G P+     +  +E Q                          V+ +D            P+K       S +   K+  +EI+ ER   P   ++     +     + +  K   + E  A A      +++   +   EP+  ++A+ S E D+W KA + EM  + +N  ++ V +PKD+ VVG+K ++KRK G  G +  +YK RLVA+ F Q EGV Y E +SP    +SIR+LLA  A +D EL   D + AFL  ++DE IY++ PE F E                    P    K                D CV+ K+ +  + + +++++DD+L   K+K  +++    L  +F++KD+G A   +G  I R+R  R L+  Q+ Y+  ++ RF++     +    G    LS T  P   EEK  M + PY   VG++M+T   +RPD+A AV  ++R+   PG  H +AV  +FQYL  T+  G+ YGG    E  ++ + D+D+   +DTR+S++G V  +  GA+SW + +Q V A  T+EAEY+A++E VKEA++L+ + E  E +M  G V V+ DN+ A  LA N+    R+KHIDV+ H VRD   A ++ V  V ++D  +D+LTK L+  KF KH
Sbjct:  511 TPQQNGLAERMNRTILERVRCMLSS-----SGLSKVFWAEAAETAVHLINRSPSSALQ-FKTPQEKWTGKAADYQHLKVFGCTAYVH--TKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCIISIDVTFNEQDMSKQTPAKDVEGLDQLQFEVEHETLQPEK-------SKETSSKTTQEEIVHERQNEPTQGLESYNLVRDRQKRQVKPPKRYGQAEMTAFA------LSVAEEIVDMEPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVKHSSIRLLLAFVAHEDLELDQLDVKTAFLHGELDELIYMQPPEGFGEGIKDGQVCLLKKSLYGLKQSPRQWYKRFDKYMLDIGFNPSSHDGCVYFKLTEDSM-VYLLLYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLETQLQGFVDADYAGNIDTRKSLTGYVFTVFGGAVSWKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITE--ELAMYRGKVVVYCDNQSAIHLAKNQSFHERSKHIDVRLHFVRDIIAAGEIGVGKVHTKDNPSDMLTKSLNVTKF-KH 1245          
BLAST of mRNA_A-nodosum_M_contig91.23.1 vs. uniprot
Match: A0A2N9H9J3_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H9J3_FAGSY)

HSP 1 Score: 312 bits (800), Expect = 2.550e-91
Identity = 232/759 (30.57%), Postives = 372/759 (49.01%), Query Frame = 1
Query:    1 DTPQYNGVAERALGILREKAIILMEELDDVINVPREKLWAQAILFACDVTNKSVTTSTDGSKSPYELWFGNFPTADHLRPFGAVGYARQGVREH-KMAPKGEKCVFM------------GIPRNFPLARNIVERQAVQWIDGPKKTGGDGTGS-------DDRGM---KSAGDEIIVERGTPQLNVQELGQEQQLTLHEHETQKALS----------ELEGDALACDDGGPMAMQATLDIPEPRNRRQAMESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDGKVEKYKCRLVAQEFWQVEGVHYTEKYSPTPATASIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQ----------------------------------EFPGAQAKADPCVFRKVVDGEVEMVVVVHIDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKI--PAASGVSTLSKTDEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKEWGITYGGQGCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEALFLRQ-VQEFMEPSMRVGAVNVFKDNEGANKLATNKHASRRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDSQKFYKHTK 2067
            +TPQ NGVAER    L +    +M +     N+P    W  A+L A  + N+  + S   S +PYELW G  P  +HLRP+G+ G+      ++ K+ P+  K +F+            G   N  +    +E + + +I+    + GD           +D G     S G  ++      + +  +L     +TL +    + +S          E+EG+ L CD           D+ EP +  +A+ S + DEW  A + EM  M +N V++ V  P  +  +G K + K K   DG +++YK RLVA+ + Q EG+ Y + +SP    ASIR++L++ A +D EL   D + AFL  ++DEEIY+  P  F+                                   F     + D CV+ K     + +++ +++DDIL    D  ++      L   F++KDMG+A + +G  ITR+R  + L   Q  Y++ +++RF +  +  I  P   G  TLS    P+N EEK +M K PY  A+G+LM+    TRPDI  AV  V+R+  NPGPAH +AV +I +YL  T +  + Y   G +L +  Y+D+D+ +  D R+S SG   +L  GA+SW S+ Q   A  T E+EYVA S  V+EA++LR+ +Q     +    AV ++ D+  A   A +     + KHI++++H +RD     +V + ++ +    AD LTKP+    F+ HTK
Sbjct:  128 NTPQQNGVAERRNRTLLDMVRSMMAQA----NLPIS-FWGDALLTAAYILNRVPSQSV--SSTPYELWKGEKPNLEHLRPWGSAGFVHSTAHKYGKLGPRARKHIFIRYSDSSKGYVMYGEHPNGGMTE--IESRDIDFIETDFPSIGDANRDLDLYELEEDEGTLPSSSEGGGLVPRPVIAEDSGSDLQPSGSITLDQDSQARRVSSRGHIPRRHFEIEGNVLLCD---------AKDVDEPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKVCRLKRSIYGLKQSSRQWYLRFHDSITSFGFEMIEEDHCVYLKRSKRSI-LILSLYVDDILLAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGC-TLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCY--HGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLGVTAHAEDAVLLYSDSTSALAYAKDPKYHGKAKHIELRYHYIRDMVSQGEVILQHISTGSMVADPLTKPIARDLFFSHTK 864          
BLAST of mRNA_A-nodosum_M_contig91.23.1 vs. uniprot
Match: A0A438K5H3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K5H3_VITVI)

HSP 1 Score: 311 bits (796), Expect = 4.570e-91
Identity = 232/744 (31.18%), Postives = 376/744 (50.54%), Query Frame = 1
Query:    4 TPQYNGVAERALGILREKAIILMEELDDVINVPREKLWAQAILFACDVTNKSVTTSTDGSKSPYELWFGNFPTADHLRPFGAVGYARQGVREHKMAPKGEKCVFMGIPRN-------FPLARNI--------VERQAVQW--------IDGPKKTGGDGTGSDDRGMKSAGDEIIVERGTPQLN-----------VQE------------------LGQEQQLT--LHEHETQKALSELEGDALACDDGGPMAMQATLDIPEPRNRRQAMESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDGKVEKYKCRLVAQEFWQVEGVHYTEKYSPTPATASIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAQAKADPCVFRKVVDGEVEMVVVVHIDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTK--IPAASGVSTLSKTDEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKEWGITYGGQGCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEALFLRQ-VQEF-MEPSMRVGAVNVFKDNEGANKLATNKHASRRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDSQKFYKH 2061
            TPQ+NGV+ER    L +    +M   D  +N     LW  A+  A  + NK  T +   S +PYE+W G  P   H++ +G   Y ++ ++  K+  + +KC F+G P+         PL   +        +ER+ +          +D  ++   + T + +  M+       V + T +L            VQE                  L Q QQ    +HE   + + +    D L       ++ +   +  +P+N  +AM+S + ++W++A E+E+  M  N V+  V   KD   +G K +YK+KIG DGKVE YK RLVA+ + Q EG+ Y E +SP     SIR+LLA+AA  D E+   D + AFL                          +PCV+++   G   + +V+++DDIL    D   M      L ++F +KD+G+A Y +G  I R+R  R L   Q +Y+++++KR++++ + +  +P  +GV TLS+ D P+ PEE+E M + PY  AVGA+M+T T TRPD+A A+   +R+  NPG  H K V  I +YL  TK+  + YG    EL ++ YTD+ F +  D  +S+SG V  L  GA+SW S  Q   A  T+EAEY+A SE  KEA+++++ + E  + PS+    + +  DN GA   A    + +++KH+  ++HL+R+  +   V++  +  ++  AD  TK L   +F KH
Sbjct:  114 TPQHNGVSERRNRTLLDMVRSMMGFTDLPVN-----LWGYALEAAAYLLNKIPTKTV--STTPYEIWKGRKPNLKHIKVWGCPAYVKK-LQTDKLEARSDKCRFIGYPKETMGYYFYHPLDHKVFVARGGTFLEREFLAEGSHGKEIELDETQEETNETTAAQEHEMEFEQPFFDVLKSTQRLQSPTIVAPEPAIVQEQVNEXXXXXXXXXXXXXXLEQIQQPLNPIHEPLRRSSRAHRAPDRLNLMVQDDLSNEVHHNDDDPKNYEEAMQSLDRNKWQEAMESEIESMKINKVWTLVEASKDIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNE------------------------EPCVYKRF-SGSTIIFLVLYVDDILLIGNDIPAMQGTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGES--ELKLKGYTDASFASDKDDSKSISGYVFTLNGGAVSWKSSKQATVADSTTEAEYIAASEAAKEAVWMKKFISELGVVPSIEE-PIPLLCDNNGAIAQAKEPRSHQKSKHVLRRYHLIREIIERGDVKIEKIDGKENAADPFTKALGITQFDKH 820          
BLAST of mRNA_A-nodosum_M_contig91.23.1 vs. uniprot
Match: A0A2N9J3H7_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J3H7_FAGSY)

HSP 1 Score: 306 bits (783), Expect = 8.010e-89
Identity = 222/732 (30.33%), Postives = 371/732 (50.68%), Query Frame = 1
Query:    1 DTPQYNGVAERALGILREKAIILMEELDDVINVPREKLWAQAILFACDVTNKSVTTSTDGSKSPYELWFGNFPTADHLRPFGAVGYARQGVREH-KMAPKGEKCVFMGIP---RNFPLARNIVERQAVQWIDGPKKTGGDGTGSDDRGM--KSAGDEIIVERGTPQLNVQELGQEQQLTLHEHETQKALSELEGDALACDDGGPMAMQATLDIPEPRNRRQAMESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDGKVEKYKCRLVAQEFWQVEGVHYTEKYSPTPATASIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQ----------------------------------EFPGAQAKADPCVFRKVVDGEVEMVVVVHIDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKI--PAASGVSTLSKTDEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKEWGITYGGQGCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEALFLRQ-VQEFMEPSMRVGAVNVFKDNEGANKLATNKHASRRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDSQKFYKHTK 2067
            +T Q NGVAER    L +    +M +     N+P    W  A+L A  + N+  + S   S +PYELW G  P  +HLRP+G+ G+      ++ K+ P+  K +F+      + + +  ++ E   ++  +G   +  +G G   R +  + +G ++   + +  + + +  Q ++++   H  ++   E+EG+ L CD           D+ EP +  +A+ S + DEW  A + EM  M +N V++ V  P     +G K + K K   DG +++YK RLVA+ + Q EG+ Y + +SP    ASIR++L++ A +D EL   D + AFL  ++DEEIY+  P  F+                                   F     + D CV+ K     + +++ +++DDIL    D  ++      L   F++KDMG+A + +G  ITR+R  + L   Q  Y++ +++RF +  +  I  P   G  TLS    P+N EEK +M K PY  A+G+LM+    TRPDI  AV  V+R+  NPGP H +AV +I +YL  T +  + Y   G +L +  Y+D+D+ +  D R+S SG   +L  GA+SW S+ Q   A  T E+EYVA S  V+EA++LR+ +Q     +    AV ++ ++      A +     + KHI++++H +RD     +V + ++ +    AD LTKP+    F+ HTK
Sbjct:   47 NTLQQNGVAERRNRTLLDMVRSMMAQA----NLPIS-FWGDALLTAAYILNRVPSQSV--SSTPYELWKGEKPNLEHLRPWGSAGFVHSTAHKYGKLGPRARKHIFIRYSDSSKGYVIDLDLYE---LEEDEGTLPSSSEGGGLVPRPVIAEDSGSDL---QPSGSITLDQDSQARRVSSRGHIPRRHF-EIEGNVLLCD---------AKDVDEPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVDLPPGHKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKIAFLNGELDEEIYMAQPAGFEAKGHERKVCRLKRSIYGLKQSSRQWYLRFHDSITSFGFEMIEEDHCVYLKRSKRSI-LILSLYVDDILLAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGC-TLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPTHWRAVKRILRYLRGTSDHALCY--HGGDLRLIGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLGVTAHAEDAVLLYSNSTSTLAYAKDPKYHGKAKHIELRYHYIRDMVSQGEVILQHISTGSMVADPLTKPIARDLFFSHTK 751          
BLAST of mRNA_A-nodosum_M_contig91.23.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 8.190e-88
Identity = 230/778 (29.56%), Postives = 369/778 (47.43%), Query Frame = 1
Query:    4 TPQYNGVAERALGILREKAI---ILMEELDDVINVPR-EKLWAQAILFACDVTNKSVTTSTDGSKSPYELWFGNFPTADHLRPFGAVGYARQGVREHKMAPKGEKCVFMGIPRNFPL--------ARNIVERQAVQWIDGPKK------------TGGDGTGSDDRGMKSAGDEIIVERGTPQLNVQELGQEQQLTLHEHETQ-----------------------------KALSELEGDALACDDGGPMAMQATLDI-PEPRNRRQAMESQEWDEWRKAEETEMLGMVENCVYKQVAR-PKDKLVVGTKMLYKRKIGQDGKVEKYKCRLVAQEFWQVEGVHYTEKYSPTPATASIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGA--------------------------------QAKADPCVFRKVVDGEVEMVVVVHIDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKIPAASGVSTLSKTDEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKEWGITYGGQGC-ELCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEALFLRQVQEFMEPSMRVGAVNVFKDNEGANKLATNKHASRRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDSQKFYKHTKFI 2073
            +P++NGVAER LG+  E A+   I  + L   + +P+ ++LWA+A+ +AC+  N +  ++   SKSPYE+W+G    A    PF    Y +   R  K+ PKGE C ++G  R+ P         A  I E + V W   P +               +G  SDD  +++                            E E+                              + + +L     A  D   +  +   D+ PEP + ++A+ S+    W KA   E+ G++    +   A+ P+   V+  + ++K K  + GK+ K K RLVA+ F Q  GV Y E +SPT   ASIR+++A+A   + EL H D EQAF+++ +D E+++++P       G                                 Q+ +DPCV R ++  EV  ++ +H+DDIL +A  K   +     LG     K++G+  +++GC  +R+R+A  ++  Q  Y+ S+++RF++ +T+ IPA       S  ++ R+  E EE    P+RE VG LMW A  TRP+ + AVR VAR    P  +  KA  KI  YL  T    + Y      ++    Y D+DF +    RRSVSGA++++A   +SW S  Q+  +  TSEAEY+A+ + VKEALF+  + +F+ P                     N  +S R+KHIDV+HH +R+ ++   + V +V S++QHAD+LTK L    F  H  F+
Sbjct:  223 SPEFNGVAERGLGLTEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY-PFLKPAYCKW-QRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTWEALPSQLPPPQPPLPIEVAEEEGEESDDD-VEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEESMDXXXXXXXXXXXXXXXVEVEASPPAARRPQHVVDLADFNTAARDAVELPKELIQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDIL-YAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPK--------------------NPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEVHRDFV 969          
BLAST of mRNA_A-nodosum_M_contig91.23.1 vs. uniprot
Match: A0A6A2Y6W3_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Y6W3_HIBSY)

HSP 1 Score: 309 bits (791), Expect = 6.210e-87
Identity = 233/715 (32.59%), Postives = 375/715 (52.45%), Query Frame = 1
Query:    4 TPQYNGVAERALGILREKAIILMEELDDVINVPREKLWAQAILFACDVTNKSVTTSTDGSKSPYELWFGNFPTADH--LRPFGAVGYARQGVREHKMAPKGEKCVFMGIP-------------RNFPLARNI----------VERQAVQWIDG-PKKTGGDGTGSDDRGMKSAGDEIIVERGTPQLNVQELGQEQQLTLHEHET---QKALSELEGDALACDDGGPMAMQATLDIPEPRNRRQAMESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDGKVE-KYKCRLVAQEFWQVEGVHYTEKYSPTPATASIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEF-----QEFPGAQAKADPCVFRKVVDGEVEMVVVVHIDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKIPAASGVST---LSKTDEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKEWGITYGGQGCE-LCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEALFLRQVQEFMEPSMRVGAVNVFKDNEGANKLATNKHASRRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTK 2031
            TPQ NGVAER    L EK   ++        + +E  WA+A+++AC + N   +T T G K+P E WFG  P  D+  L  FG+  Y    V+E K+ P+ +K +FMGI              +    +R++          V  + ++  DG PKK   +G+       ++  D  +VE  + +  VQ     QQ     HE+   +K    +   A   D     +  A  D+P   N  +A++S E  +WR A   EM  + +N  +K  + PK K  +G K +Y +K G   K   +YK RLVA+ + Q EGV Y E +SP    +SIR+LLA+    D EL   D + AFL  D+DEEIY   P+ F     +E    ++K D CV+   ++    + +++++DD+L  ++ +  + +   +L ++F++KD+G+A   +G  I+R++K   L   Q  Y+  ++KRF + + +K P ++ ++    L  +  P++  E+E M K PY  AVG+LM+    TR DI+ A+  V+R+  +PG  H +AV  I  Y+L+T + G+ +  +  +  C+  Y DSD+   LD RRS +G V   AK  +SW S +Q   A  T+EAEY+A++E VKEA++L+ +    E  M    + V  D++ A  LA N+    RTKHIDV++H VR+  +   V +  +R+ +  AD+LTK
Sbjct:  560 TPQQNGVAERMNRTLMEKVRCMLSNA----GLGKE-FWAEALVYACHLINHLPST-TIGGKTPLEKWFG-VPATDYDSLHVFGSTTYYH--VKESKLDPRAKKVIFMGITSGVKGYRLWCPETKKIIFSRDVTFDESTMLRKVTSEKLEQTDGTPKKVEFEGSKFVSTSKENDIDSPMVEEESDEEEVQTQEPPQQ-----HESIALRKGKKTIRQPAHYVDMVTFASPIAIDDVPATFN--EAVKSSEHKKWRIAMNEEMQSLQKNQTWKLASLPKGKKAIGCKWVYAKKDGFPDKNNIRYKARLVAKGYAQTEGVDYNEVFSPVVKHSSIRILLALVVQLDLELVQMDVKTAFLHGDLDEEIYTTQPDGFKVAEKEEMKYTRSKYDNCVYLCELEDGSYIYLLLYVDDMLIASRSQTEIAKLKTQLNREFEMKDLGEAKKILGMEISRDKKLGRLCLSQKEYLRKVLKRFGINEMSK-PVSTPLAPHFKLGASMSPKDDAEREYMSKVPYASAVGSLMYAMVCTRSDISQAIGVVSRYMHDPGKEHWQAVKWILWYILNTVDVGLVFQQEKQDGQCVVGYCDSDYAGDLDKRRSTTGYVFTFAKAPVSWKSTLQSTVALSTTEAEYMAVTEAVKEAIWLQGL--LGELGMEQKHIKVHCDSQSAIHLAKNQVYHARTKHIDVRYHFVREILEESGVIIQKIRTTENPADMLTK 1255          
BLAST of mRNA_A-nodosum_M_contig91.23.1 vs. uniprot
Match: A0A8J5YVE7_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YVE7_9ROSI)

HSP 1 Score: 298 bits (763), Expect = 1.100e-86
Identity = 230/749 (30.71%), Postives = 389/749 (51.94%), Query Frame = 1
Query:    1 DTPQYNGVAERALGILREKAIILMEELDDVINVPREKLWAQAILFACDVTNKSVTTSTDGSKSPYELWFGNFPTADH--LRPFGAVGYARQGVREHKMAPKGEKCVFMGIP---RNFPL----ARNIVERQAVQWIDGP--KKTGGDG--TGSDDRGMKSAGDEIIVE--RGTPQLNVQELGQEQQLTLHEHETQKALSELEGDALA-----------CDDGGPMAMQATLDIPEPRNRRQAMESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDGKVE-KYKCRLVAQEFWQVEGVHYTEKYSPTPATASIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPG----------------------------------AQAKADPCVFRKVVDGEVEMVVVVHIDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTK---IPAASGVSTLSKTDEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKEWGITYG-GQGCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEALFLRQVQEFMEPSMRVGAVNVFKDNEGANKLATNKHASRRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDSQKF 2052
            DTPQ NGVAER    L EK   ++           ++ WA+A+ +A  + N+  +++ +  K+P E+W G  PT D+  L  FG+  Y    V+E K+ P+ +K +FMGI    + F L     + ++  + V + +    KK   +   TG+  + ++    ++  E  R  P          ++L + E  TQ+ LS  E  A+A             D    A+   +D   P   ++AM+S E D+W+ A + EM  + +N  ++    PK K  +G K ++ +K     K + +YK RLVA+ + Q EG+ Y + +SP    +SIR+LLA+ A  + EL   D   AFL  +++EEIY+  PE +++  G                                   ++K D CV+ + +     + +++++DD+L  +K +  +D+  A+L ++F++KD+G+    +G  I+R+R+  +L  +Q  Y++ +++ F V + TK    P AS +  L+    P+  EE+E M K PY  AVG+LM+    TRPDI+ AV  V+R+  +PG  H +AV  I +YLL T + G+ +   +     +  Y DSDF   LD RRS +G +  LAK  +SW S +Q   A  T+EAEY+A++EVVKEA++L  + E +   +    ++++ D++ A  LA N+    RTKHIDV++H VR+  +  K+ +  + + D  AD++TK + + KF
Sbjct:   43 DTPQQNGVAERMNRTLLEKVRCMLSNTG-----LGKQFWAEAVTYASHLVNRLPSSALE-RKTPMEVWSGK-PTTDYDSLHVFGSTAYYH--VKESKLDPRAKKALFMGITSGVKGFRLWCLDTKKMICSRDVTFDESATLKKVADEDIQTGNTPQQVECTPKQVEFEQVRICPVNKSNSPATMEELEVEEVLTQEPLSTPEPVAVARPRREIRRPARFTDMVAYAL-PVVDDDIPVTYQEAMQSLESDKWKSAMDEEMQSLRKNNTWELAQLPKGKRAIGCKWVFAKKDRSPSKKDVRYKARLVAKGYAQKEGIDYNDVFSPVVKHSSIRILLALVAQLNLELAQLDVNTAFLHGELEEEIYMTQPEGYEDAGGINWVCKLNKSLYGLKQSPRQWYKRFDSFMRRQKYTRSKYDNCVYLQKLHDRSFIYLLLYVDDMLIASKSQKEIDKLKAQLNEEFEMKDLGEVKKILGMEISRDRQKGKLCLNQKQYLKKVLQCFGVNENTKHVSTPLASHLK-LNAQLSPKTEEEREYMAKVPYANAVGSLMYAMVCTRPDISQAVGVVSRYMHDPGKGHWQAVKWILRYLLKTVDVGLVFEQDEALGQFVVGYVDSDFAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVAISTTEAEYMAVTEVVKEAIWLNGLLEDL--GVVQSHISLYCDSQNAIHLAKNQVYHSRTKHIDVRYHFVREVFEKGKILLQKIPTTDNPADIMTKVVTTIKF 778          
BLAST of mRNA_A-nodosum_M_contig91.23.1 vs. uniprot
Match: A0A2N9HJ76_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HJ76_FAGSY)

HSP 1 Score: 301 bits (771), Expect = 2.240e-86
Identity = 235/741 (31.71%), Postives = 365/741 (49.26%), Query Frame = 1
Query:    4 TPQYNGVAERALGILREKAIILMEELDDVINVPREKL-WAQAILFACDVTNKSVTTSTDGSKSPYELWFGNFPTADHLRPFGAVGYAR-QGVREHKMAPKGEKCVFMGIPRNF-------PLARNIVERQAVQWIDGPKKTGGDGTGSDDRGMKSAGDEIIVERGTPQLNVQELGQEQQLTLHEHETQKALSELEGDALACDDGGP-------MAMQATLDIPE-PRNRRQAMESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDGKV-EKYKCRLVAQEFWQVEGVHYTEKYSPTPATASIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAQ-----------------------------------AKADPCVFRKVVDGEVEMVVVVHIDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDV--KKTTKIPAASGVSTLSKTDEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKEWGITYGGQGCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEALFLRQVQEFMEPSMRVGAVNVFKDNEGANKLATNKHASRRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDSQKFYKH 2061
            TPQ NGVAER    + E A  L       +N    K+ WA+A+  AC + N+S   + DG K   E+W G       +R FG   Y    G    K+ PK +KC+F+G  +         P+A+ +V  + V + D    T        +   ++A     + R T Q+ + EL  E Q     H   +       D    +   P       +   A L   E P   ++A+ES E D+W +A   E   + +N  ++    PK K  +G K ++K+K     K  E++K RLVA+ + Q  G+ Y E +SP     SIR +LA+ A +D EL   D + AFL  +++EEI++E PE F++ PG +                                    + D CV+ ++++    + +++++DD+L  AK    ++R  + L ++F++KD+G A   +G  I R+R AR+L   Q  Y+  ++++F +   K    P A+    LS +  P+N EE E M K PY  AVG LM+    TRPD+A AV  V+R+  NPG  H  AV  IF+YL  T E GI +  Q     +  Y D+D+   +D RRS +G V  L+ G I W S +Q + A  T+EAEY+A++E  KEAL+L+ + +  E  +  G V +  D++ A  LA N+    RTKHIDV+ H +R+      + +  V + +  AD+LTKP+ + KF KH
Sbjct:  248 TPQQNGVAERLNRTITETARCLR------LNAELPKIFWAEAVDMACYIINRSPRVALDG-KVAEEVWTGQEVDYSFMRIFGCPAYVHISGEDRSKLDPKSKKCIFLGFKKGVKGYKLWDPVAQKVVISRDVVF-DEKSMT----KAFKEEKSQAAESSNNIGRSTVQVELDEL--ESQSNEEPHSNDQEQDSTRSDRPKRNKRPPVRYGFEDLVSYALLTSSEDPSTFQEAIESSEKDKWMEAMVEENESLSKNKTWELTELPKGKKPIGCKWVFKKKEAVSEKEGERFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQ-PGTENLVCRLKKSLYGLKQSPRQWYKRFDSYMIQIGYTRCEYDCCVYVRILEDGSYIFLLLYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIHRDRGARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFR-LSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQSGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVK--ELGLNQGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPVTTTKF-KH 969          
BLAST of mRNA_A-nodosum_M_contig91.23.1 vs. uniprot
Match: A0A498JVW7_MALDO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498JVW7_MALDO)

HSP 1 Score: 295 bits (755), Expect = 2.810e-86
Identity = 188/498 (37.75%), Postives = 283/498 (56.83%), Query Frame = 1
Query:  625 EPRNRRQAMESQEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVVGTKMLYKRKIGQDGKVEKYKCRLVAQEFWQVEGVHYTEKYSPTPATASIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPE----------------EFQEFPGAQAKADPCVFRKVVDGEVEMVVVVHIDDILAHAKDKATMDRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTK--IPAASGVSTLSKTDEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKEWGITYGGQGCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEALFLRQ-VQEFMEPSMRVGAVNVFKDNEGANKLATNKHASRRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDSQKFYKH 2061
            +PR+  +AM   +   W++A ++EM  M +N V+  V  P+  + VG K ++KRKIG DG VE YK RLVA  + Q EG+ Y E +SP     SIR+LLA+AA  D E+   D + AFL + ++EE+Y+  PE                E + F   Q + + CV++KVV GE  + +V+++DDIL    D A +      L + F +KD+GDA Y +G  + R+R  R +   Q +Y++ ++ RF ++++ K  +P   G+  LSK+ EP+ PEE  +M   PY  A+G+LM+     RPDIA AV   +R+  NPGP H  AV  +F+YL  TK+  + YG +  EL +EAYTD++F + +D R S SG V  L  GA+SW S+ Q V A  T+EAEYVA +E  KEA ++++ + E          V ++ DN GA   A    A ++ KH D + +++R  +   KV +  V S D  AD LTKP+   +  +H
Sbjct:  205 DPRDYTEAMSDIDSKRWQEAMKSEMDSMYQNQVWTLVDPPEGIVPVGNKWVFKRKIGVDGNVETYKARLVAG-YRQREGIDYEETFSPVAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNSYLEEELYMTQPEGFVSKSEKTKNIRFDTEIKTFGFTQNEDENCVYQKVV-GEAVVFLVLYVDDILLFGNDTAILSSVKVWLSKTFHMKDLGDASYVLGIKLYRDRSRRLIGLSQSMYIDKVLSRFQMEQSKKGFLPVRHGIH-LSKSMEPKTPEEIRQMNVIPYASAIGSLMYAMICIRPDIAYAVSITSRYQSNPGPEHWAAVKTVFKYLRRTKDMFLVYG-RAAELRVEAYTDANFQSDVDDRSSNSGYVFTLNGGAVSWKSKKQSVIADSTTEAEYVAAAEAGKEAFWMKKFITELGVVPTITSPVTLYCDNSGAIAQAKEPRAYQKNKHFDRRFNIIRRYAVEGKVNILKVASADNVADPLTKPMSLIQLDRH 698          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig91.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9IUC8_FAGSY3.970e-9933.73Integrase catalytic domain-containing protein n=2 ... [more]
A0A438FEW0_VITVI4.950e-9231.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9H9J3_FAGSY2.550e-9130.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A438K5H3_VITVI4.570e-9131.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9J3H7_FAGSY8.010e-8930.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J594_9PHAE8.190e-8829.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A2Y6W3_HIBSY6.210e-8732.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5YVE7_9ROSI1.100e-8630.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9HJ76_FAGSY2.240e-8631.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A498JVW7_MALDO2.810e-8637.75Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig91contigA-nodosum_M_contig91:404454..406938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog164328.Phyra85763
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size2076
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.9e-88
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size2076
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870361.148058-CDS-A-nodosum_M_contig91:404453..4054821680870361.148058-CDS-A-nodosum_M_contig91:404453..405482Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig91 404454..405482 -
1680870361.2153687-CDS-A-nodosum_M_contig91:405578..4060611680870361.2153687-CDS-A-nodosum_M_contig91:405578..406061Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig91 405579..406061 -
1680870361.3640451-CDS-A-nodosum_M_contig91:406348..4065651680870361.3640451-CDS-A-nodosum_M_contig91:406348..406565Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig91 406349..406565 -
1680870361.3883557-CDS-A-nodosum_M_contig91:406591..4069381680870361.3883557-CDS-A-nodosum_M_contig91:406591..406938Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig91 406592..406938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig91.23.1prot_A-nodosum_M_contig91.23.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig91 404454..406938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig91.23.1

>prot_A-nodosum_M_contig91.23.1 ID=prot_A-nodosum_M_contig91.23.1|Name=mRNA_A-nodosum_M_contig91.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=692bp
DTPQYNGVAERALGILREKAIILMEELDDVINVPREKLWAQAILFACDVT
NKSVTTSTDGSKSPYELWFGNFPTADHLRPFGAVGYARQGVREHKMAPKG
EKCVFMGIPRNFPLARNIVERQAVQWIDGPKKTGGDGTGSDDRGMKSAGD
EIIVERGTPQLNVQELGQEQQLTLHEHETQKALSELEGDALACDDGGPMA
MQATLDIPEPRNRRQAMESQEWDEWRKAEETEMLGMVENCVYKQVARPKD
KLVVGTKMLYKRKIGQDGKVEKYKCRLVAQEFWQVEGVHYTEKYSPTPAT
ASIRMLLAMAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAQ
AKADPCVFRKVVDGEVEMVVVVHIDDILAHAKDKATMDRFAAELGQKFKL
KDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKIPAAS
GVSTLSKTDEPRNPEEKEEMRKFPYREAVGALMWTATMTRPDIACAVRAV
ARFCENPGPAHKKAVMKIFQYLLHTKEWGITYGGQGCELCMEAYTDSDFG
ACLDTRRSVSGAVLMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVKEA
LFLRQVQEFMEPSMRVGAVNVFKDNEGANKLATNKHASRRTKHIDVKHHL
VRDASDARKVRVAYVRSEDQHADLLTKPLDSQKFYKHTKFI*
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mRNA from alignment at A-nodosum_M_contig91:404454..406938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig91.23.1 ID=mRNA_A-nodosum_M_contig91.23.1|Name=mRNA_A-nodosum_M_contig91.23.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2485bp|location=Sequence derived from alignment at A-nodosum_M_contig91:404454..406938- (Ascophyllum nodosum dioecious)
GACACGCCGCAGTACAATGGGGTGGCCGAACGTGCGCTTGGGATTTTAAG AGAAAAGGCGATCATCCTGATGGAGGAGTTAGACGACGTCATCAACGTGC CGCGAGAGAAGCTATGGGCTCAGGCAATACTTTTCGCGTGCGACGTCACC AACAAGTCAGTCACAACGTCAACGGATGGGAGTAAGTCGCCGTATGAACT ATGGTTTGGAAATTTCCCTACTGCCGATCATTTGCGCCCGTTTGGAGCGG TGGGATACGCGCGACAGGGCGTTCGTGAACATAAGATGGCGCCAAAAGGA GAGAAATGCGTATTCATGGGAATTCCCCGAAACTTCCCACTGGCACGGTA AGCGTGCTACTCGTAACGTCAAGAAATATCGTGGAAAGGCAGGCCGTGCA GTGGATCGACGGGCCTAAAAAGACCGGGGGTGACGGCACCGGCAGTGACG ACCGCGGCATGAAGTCGGCGGGAGATGAAATCATTGTTGAGAGAGGGACT CCGCAGCTCAATGTTCAGGAGCTAGGACAGGAACAGCAGTTAACGCTGCA CGAGCACGAGACACAGAAGGCGCTTTCGGAACTCGAAGGGGTGACGCAGG GGGCGTTATCGGAACATGAGGAGGAGACACAGGAGGCGCTTTCGGAAAAC GAGCGAGAGCAGCGCAGCATGAGGAGGGGGGAGCGGAACCTGCATTGGGG TTGGTAAATTTGGAGGGACCGGCCTTACCCGCGCTGCGTAAGCTCACCAT CGACGGCAATATCCCGCCCATACTGTCATCACGTACAAGGAGTCGAAGAC CCCACATCGGTATGGAGGGAGAAGCGTTGCATTGTTTCTTGCCGGCGATC GAGGCCGAAGAGGAAAACGGCGTGGAGGATGCGTTGGCGTGCGACGACGG GGGCCCGATGGCTATGCAGGCGACGCTAGATATACCGGAACCGAGAAATC GGCGGCAGGCGATGGAATCGCAGGAATGGGACGAATGGCGGAAGGCAGAG GAGACTGAGATGCTTGGAATGGTCGAGAACTGCGTTTATAAGCAGGTGGC TCGGCCGAAGGATAAGCTCGTGGTCGGCACGAAAATGCTATACAAGCGAA AAATCGGACAGGACGGCAAGGTCGAGAAGTACAAGTGTCGACTTGTCGCT CAAGAGTTCTGGCAGGTGGAAGGTGTGCACTACACGGAAAAGTACTCGCC CACGCCAGCAACCGCGTCAATCCGGATGCTTTTGGCGATGGCAGCGGCCA AGGACGGAGAGCTGCGCCATTTCGACGCAGAGCAGGCATTTTTGAAGGCG GATATTGACGAAGAAATATACATTGAGATCCCTGAGGAGTTCCAGGAGTT TCCAGGGGCAGTGGGACGGCTGAACAAGGCCATTTACGGACTCGTGCAGG CGAGGAGGTGTTGGAACAATAAGTTCTGTGACGACATGACGGCGATTGGA TTCGAGCAGGCAAAGGCGGACCCGTGCGTGTTCCGCAAGGTCGTTGACGG TGAGGTGGAAATGGTGGTGGTCGTACACATAGACGACATTCTTGCCCACG CCAAAGACAAAGCGACGATGGATAGATTCGCGGCTGAGCTTGGGCAGAAG TTCAAATTGAAGGACATGGGCGACGCCGGGTACTACATGGGCTGTCACAT CACAAGGAACCGCAAGGCGCGCGAGTTGAAGTTCGACCAACACTTATACG TGGAGTCAATGGTAAAAAGGTTTGACGTGAAGAAGACAACTAAGATACCG GCTGCGTCGGGGGTGTCGACGCTCTCAAAGACGGATGAACCGCGGAACCC TGAGGAGAAGGAGGAAATGAGGAAGTTCCCGTACCGGGAGGCAGTGGGGG CGCTCATGTGGACGGCGACGATGACACGGCCGGATATTGCGTGCGCCGTA CGCGCTGTGGCCAGGTTCTGCGAAAACCCTGGGCCGGCGCATAAAAAGGC AGTGATGAAGATCTTCCAGTATCTACTTCACACGAAAGAATGGGGGATTA CGTACGGTGGACAGGGCTGTGAACTTTGCATGGAAGCTTATACGGACTCG GATTTCGGAGCCTGCCTGGACACAAGACGATCGGTTTCGGGTGCGGTGTT GATGCTGGCGAAGGGAGCGATCAGCTGGCACTCAAGGATGCAAGAAGTGA CAGCATCGGGTACCTCGGAGGCTGAATACGTTGCCTTATCAGAGGTGGTA AAGGAAGCACTATTTTTGAGACAGGTGCAGGAGTTTATGGAACCGTCGAT GAGGGTCGGTGCAGTGAATGTGTTCAAAGATAATGAGGGGGCCAACAAGT TGGCCACAAACAAGCACGCTAGCCGTAGGACTAAGCACATTGATGTAAAA CATCATCTAGTAAGGGACGCGTCTGACGCGCGAAAGGTTAGAGTAGCGTA CGTGAGGTCGGAAGATCAGCACGCGGATTTGCTCACAAAGCCGCTAGACT CGCAAAAGTTCTACAAGCACACGAAGTTTATCTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig91:404454..406938-

>mRNA_A-nodosum_M_contig91.23.1 ID=mRNA_A-nodosum_M_contig91.23.1|Name=mRNA_A-nodosum_M_contig91.23.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2076bp|location=Sequence derived from alignment at A-nodosum_M_contig91:404454..406938- (Ascophyllum nodosum dioecious)
GACACGCCGCAGTACAATGGGGTGGCCGAACGTGCGCTTGGGATTTTAAG
AGAAAAGGCGATCATCCTGATGGAGGAGTTAGACGACGTCATCAACGTGC
CGCGAGAGAAGCTATGGGCTCAGGCAATACTTTTCGCGTGCGACGTCACC
AACAAGTCAGTCACAACGTCAACGGATGGGAGTAAGTCGCCGTATGAACT
ATGGTTTGGAAATTTCCCTACTGCCGATCATTTGCGCCCGTTTGGAGCGG
TGGGATACGCGCGACAGGGCGTTCGTGAACATAAGATGGCGCCAAAAGGA
GAGAAATGCGTATTCATGGGAATTCCCCGAAACTTCCCACTGGCACGAAA
TATCGTGGAAAGGCAGGCCGTGCAGTGGATCGACGGGCCTAAAAAGACCG
GGGGTGACGGCACCGGCAGTGACGACCGCGGCATGAAGTCGGCGGGAGAT
GAAATCATTGTTGAGAGAGGGACTCCGCAGCTCAATGTTCAGGAGCTAGG
ACAGGAACAGCAGTTAACGCTGCACGAGCACGAGACACAGAAGGCGCTTT
CGGAACTCGAAGGGGATGCGTTGGCGTGCGACGACGGGGGCCCGATGGCT
ATGCAGGCGACGCTAGATATACCGGAACCGAGAAATCGGCGGCAGGCGAT
GGAATCGCAGGAATGGGACGAATGGCGGAAGGCAGAGGAGACTGAGATGC
TTGGAATGGTCGAGAACTGCGTTTATAAGCAGGTGGCTCGGCCGAAGGAT
AAGCTCGTGGTCGGCACGAAAATGCTATACAAGCGAAAAATCGGACAGGA
CGGCAAGGTCGAGAAGTACAAGTGTCGACTTGTCGCTCAAGAGTTCTGGC
AGGTGGAAGGTGTGCACTACACGGAAAAGTACTCGCCCACGCCAGCAACC
GCGTCAATCCGGATGCTTTTGGCGATGGCAGCGGCCAAGGACGGAGAGCT
GCGCCATTTCGACGCAGAGCAGGCATTTTTGAAGGCGGATATTGACGAAG
AAATATACATTGAGATCCCTGAGGAGTTCCAGGAGTTTCCAGGGGCACAG
GCAAAGGCGGACCCGTGCGTGTTCCGCAAGGTCGTTGACGGTGAGGTGGA
AATGGTGGTGGTCGTACACATAGACGACATTCTTGCCCACGCCAAAGACA
AAGCGACGATGGATAGATTCGCGGCTGAGCTTGGGCAGAAGTTCAAATTG
AAGGACATGGGCGACGCCGGGTACTACATGGGCTGTCACATCACAAGGAA
CCGCAAGGCGCGCGAGTTGAAGTTCGACCAACACTTATACGTGGAGTCAA
TGGTAAAAAGGTTTGACGTGAAGAAGACAACTAAGATACCGGCTGCGTCG
GGGGTGTCGACGCTCTCAAAGACGGATGAACCGCGGAACCCTGAGGAGAA
GGAGGAAATGAGGAAGTTCCCGTACCGGGAGGCAGTGGGGGCGCTCATGT
GGACGGCGACGATGACACGGCCGGATATTGCGTGCGCCGTACGCGCTGTG
GCCAGGTTCTGCGAAAACCCTGGGCCGGCGCATAAAAAGGCAGTGATGAA
GATCTTCCAGTATCTACTTCACACGAAAGAATGGGGGATTACGTACGGTG
GACAGGGCTGTGAACTTTGCATGGAAGCTTATACGGACTCGGATTTCGGA
GCCTGCCTGGACACAAGACGATCGGTTTCGGGTGCGGTGTTGATGCTGGC
GAAGGGAGCGATCAGCTGGCACTCAAGGATGCAAGAAGTGACAGCATCGG
GTACCTCGGAGGCTGAATACGTTGCCTTATCAGAGGTGGTAAAGGAAGCA
CTATTTTTGAGACAGGTGCAGGAGTTTATGGAACCGTCGATGAGGGTCGG
TGCAGTGAATGTGTTCAAAGATAATGAGGGGGCCAACAAGTTGGCCACAA
ACAAGCACGCTAGCCGTAGGACTAAGCACATTGATGTAAAACATCATCTA
GTAAGGGACGCGTCTGACGCGCGAAAGGTTAGAGTAGCGTACGTGAGGTC
GGAAGATCAGCACGCGGATTTGCTCACAAAGCCGCTAGACTCGCAAAAGT
TCTACAAGCACACGAAGTTTATCTAA
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