mRNA_A-nodosum_M_contig909.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig909.1.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 253 bits (646), Expect = 1.270e-73 Identity = 133/258 (51.55%), Postives = 170/258 (65.89%), Query Frame = 1
Query: 1 LATLRGKHPTEDPAAIASG----------------QIPEMENLFEEATVKAVIK-ANPQSAAGPSGLRYSHLQAALCDELVEDLAAFATLVFSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYLQPWGQYGVAVFGGVEIMAFTATLGFEEGCTNLSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGLEVIESARGVQQGCNLGPLCYSAGSLKILK 723
L TLR KHP E IA +I +E F TV A I+ NPQ + GPSGLR+S LQ++L EL E +A +++F LP FW LHTSANLSA+G K RP+A GD+ RR++G V CR+YG LA++ +P GQYGVAV GG E++A A L ++G L+YD NAFNS+ R LPALA+++P ++PYA+N+YAREPPKLL+ D G + VI SA GVQQGCNLGPLCYSAG LK+L+
Sbjct: 1115 LETLRKKHPGESQQEIAEACCEATARLSRPPPGVSRIEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSG-MAVIPSATGVQQGCNLGPLCYSAGLLKLLR 1371
BLAST of mRNA_A-nodosum_M_contig909.1.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE) HSP 1 Score: 211 bits (536), Expect = 5.260e-63 Identity = 123/262 (46.95%), Postives = 155/262 (59.16%), Query Frame = 1
Query: 1 LATLRGKHPTEDPAAIASG------------------QIPEMENLFEEATVKAVIK-ANPQSAAGPSGLRYSHLQAA-LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYLQPWGQYGVAVFGGVEIMAFTATLGFEEGCTNLSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGLEVIESARGVQQGCNLGPLCYSAGSLKILK 723
L LR HP EDP IA+ + E + FE +K +K ANPQSA GP GLR+S+LQA + D E LA F+ VF LP FW LHTSANLSALG+K RP+A G VLRR+I FCR+Y +A+ + Q+G V GGVEI+A TA L ++G T LS+DG NA+NS+ R LPA+A P +V Y N+YAR KLLF ++ G +EV+ S RGVQQGCNLG + G L I+K
Sbjct: 75 LEHLRNLHPNEDPDDIATAWDSSIKAAGDRIETHKIDSVAEPDEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMK 336
BLAST of mRNA_A-nodosum_M_contig909.1.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE) HSP 1 Score: 209 bits (532), Expect = 2.850e-60 Identity = 122/262 (46.56%), Postives = 154/262 (58.78%), Query Frame = 1
Query: 1 LATLRGKHPTEDPAAIASG------------------QIPEMENLFEEATVKAVIK-ANPQSAAGPSGLRYSHLQAA-LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYLQPWGQYGVAVFGGVEIMAFTATLGFEEGCTNLSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGLEVIESARGVQQGCNLGPLCYSAGSLKILK 723
L LR HP EDP IA+ + E + FE +K +K ANPQSA GP GLR+S+LQA + D E LA F+ VF LP FW LHTSANLSALG+K RP+A G VLRR+I FC +Y +A+ + Q+G V GGVEI+A TA L ++G T LS+DG NA+NS+ R LPA+A P +V Y N+YAR KLLF ++ G +EV+ S RGVQQGCNLG + G L I+K
Sbjct: 75 LEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMK 336
BLAST of mRNA_A-nodosum_M_contig909.1.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 211 bits (537), Expect = 1.100e-59 Identity = 123/262 (46.95%), Postives = 155/262 (59.16%), Query Frame = 1
Query: 1 LATLRGKHPTEDPAAIASG------------------QIPEMENLFEEATVKAVIK-ANPQSAAGPSGLRYSHLQAA-LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYLQPWGQYGVAVFGGVEIMAFTATLGFEEGCTNLSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGLEVIESARGVQQGCNLGPLCYSAGSLKILK 723
L LR HP EDP IA+ + E + FE +K +K ANPQSA GP GLR+S+LQA + D E LA F+ VF LP FW LHTSANLSALG+K RP+A G VLRR+I FCR+Y +A+ + Q+G V GGVEI+A TA L ++G T LS+DG NA+NS+ R LPA+A P +V Y N+YAR KLLF ++ G +EV+ S RGVQQGCNLG + G L I+K
Sbjct: 75 LEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMK 336
BLAST of mRNA_A-nodosum_M_contig909.1.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 212 bits (540), Expect = 1.570e-59 Identity = 123/262 (46.95%), Postives = 155/262 (59.16%), Query Frame = 1
Query: 1 LATLRGKHPTEDPAAIASG------------------QIPEMENLFEEATVKAVIK-ANPQSAAGPSGLRYSHLQAA-LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYLQPWGQYGVAVFGGVEIMAFTATLGFEEGCTNLSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGLEVIESARGVQQGCNLGPLCYSAGSLKILK 723
L LR HP EDP IA+ + E + FE +K +K ANPQSA GP GLR+S+LQA + D E LA F+ VF LP FW LHTSANLSALG+K RP+A G VLRR+I FCR+Y +A+ + Q+G V GGVEI+A TA L ++G T LS+DG NA+NS+ R LPA+A P +V Y N+YAR KLLF ++ G +EV+ S RGVQQGCNLG + G L I+K
Sbjct: 75 LEHLRNLHPNEDPDDIATAWDSSIKVAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMK 336
BLAST of mRNA_A-nodosum_M_contig909.1.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE) HSP 1 Score: 174 bits (441), Expect = 6.230e-48 Identity = 92/184 (50.00%), Postives = 117/184 (63.59%), Query Frame = 1
Query: 175 LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYLQPWGQYGVAVFGGVEIMAFTATLGFEEGCTNLSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGLEVIESARGVQQGCNLGPLCYSAGSLKILK 723
+ D E LA F+ VF LP FW LHTSANLSALG+K RP+A G VLRR+I FCR+Y +A+ + Q+G V GGVEI+A TA L ++G T LS+DG NA+NS+ R LPA+A P + Y N+YAR KLLF ++ G +EV+ S RGVQQGCNLG + G L I+K
Sbjct: 1 MSDYFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMK 184
BLAST of mRNA_A-nodosum_M_contig909.1.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 172 bits (435), Expect = 2.400e-45 Identity = 91/184 (49.46%), Postives = 117/184 (63.59%), Query Frame = 1
Query: 175 LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYLQPWGQYGVAVFGGVEIMAFTATLGFEEGCTNLSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGLEVIESARGVQQGCNLGPLCYSAGSLKILK 723
+ D E LA F+ VF LP W LHTSANLSALG+K RP+A G VLRR+I F R+Y +A+ + Q+G V GGVEI+A TA L ++G T LS+DG NA+NS+ R LPA+A + P +V Y N+YAR KLLF ++ G +EV+ S RGVQQGCNLG + G L I+K
Sbjct: 1 MSDSFTETLADFSFKVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMK 184
BLAST of mRNA_A-nodosum_M_contig909.1.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE) HSP 1 Score: 150 bits (380), Expect = 2.680e-42 Identity = 81/166 (48.80%), Postives = 106/166 (63.86%), Query Frame = 1
Query: 175 LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYLQPWGQYGVAVFGGVEIMAFTATLGFEEGCTNLSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGLEVIESARGVQQ 669
+ D+ E LA F+ VF LP +FW TSA+LSALG+K RP+A G VLRR+I FCR+Y + +AD + Q+G V GGVEI+A TA L ++G T LS+DG NA+NSI R L A+A P +V Y NLYAR KLLF ++ G +E++ S R VQQ
Sbjct: 1 MSDDFSETLADFSYKVFYYGDELPDLFWGFQTSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAALSHQQGSTILSFDGRNAYNSILRSSILTAVATHTPHLVKYFGNLYARIKAKLLFKMEDGSIEMVRSQREVQQ 166
BLAST of mRNA_A-nodosum_M_contig909.1.1 vs. uniprot
Match: A0A836CHA2_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHA2_9STRA) HSP 1 Score: 127 bits (320), Expect = 6.290e-30 Identity = 96/275 (34.91%), Postives = 130/275 (47.27%), Query Frame = 1
Query: 1 LATLRGKHPTEDP--------------AAIASGQIPEMENLFEEA-----TVKAVIKANPQSAAGPSGLRYSHLQAALC-----DELVEDLAAFATLVFSSRV-LPQVFWTLHTSANLSALGQ-------KARPVACGDVLRR--VIGAVFCRRYGRKLADYLQPWGQYGVAVFGGVEIMAFTATLGFEEGCTNLSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGLEVIESARGVQQGCNLGPLCYSAGSLKILK 723
A + KHP P AA A+ E++ L E+ K + +A+P AGPSGLRYSHLQ AL ++ L + LV +P FW LH +A L+ L + K RP+ACG+VL+R V +V+ LA+ LQP GQYGVAV G E A L +E G + D NAFN++ +A +P ++ Y Y R P+LLF G + I S RGV+QG LGP+ + G LK
Sbjct: 2431 FAAMEAKHPAAAPGEAAAELANMAAQVAATAAPMPAELQLLREDGICGDTVAKCIQRASPYRRAGPSGLRYSHLQDALRTTWGKQQMSLTLVRWIELVMRDAARIPDDFWQLHAAARLTPLTERQADGTPKLRPIACGEVLQRLPVCTSVYVGERKGFLAELLQPDGQYGVAVSAGAEKAALAGKLAYELGHWQFNVDLRNAFNALKVTAAAKWVAAQLPDLLNYFLATYMRNRPQLLFQHADGSVRTIASQRGVKQGGPLGPVLFCGGIADCLK 2705
BLAST of mRNA_A-nodosum_M_contig909.1.1 vs. uniprot
Match: A0A6H5KQE6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE6_9PHAE) HSP 1 Score: 105 bits (263), Expect = 5.610e-25 Identity = 62/137 (45.26%), Postives = 81/137 (59.12%), Query Frame = 1
Query: 175 LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVI------------GAVFCRRYGRKLADYLQPWGQYGVAVFGGVEIMAFTATLGFEEGCTNLSYDGANAFNSIYRHRFLPALA 546
+ D+ LA F+ VF LP +FW LHTSA+LSALG+K RP+A G VLRR+I FCR+Y + +AD + Q+G V GGVEI+A TA ++G T LS+DG NA+NSI R L A+A
Sbjct: 1 MSDDFSATLADFSHKVFYYGDELPDLFWGLHTSASLSALGEKKRPIAVGGVLRRIIXIXXXXXXXXXISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAAPSHQQGSTILSFDGKNAYNSILRSSILTAVA 137 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig909.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig909.1.1 >prot_A-nodosum_M_contig909.1.1 ID=prot_A-nodosum_M_contig909.1.1|Name=mRNA_A-nodosum_M_contig909.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=241bp LATLRGKHPTEDPAAIASGQIPEMENLFEEATVKAVIKANPQSAAGPSGLback to top mRNA from alignment at A-nodosum_M_contig909:22879..23693- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig909.1.1 ID=mRNA_A-nodosum_M_contig909.1.1|Name=mRNA_A-nodosum_M_contig909.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=815bp|location=Sequence derived from alignment at A-nodosum_M_contig909:22879..23693- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig909:22879..23693- >mRNA_A-nodosum_M_contig909.1.1 ID=mRNA_A-nodosum_M_contig909.1.1|Name=mRNA_A-nodosum_M_contig909.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=723bp|location=Sequence derived from alignment at A-nodosum_M_contig909:22879..23693- (Ascophyllum nodosum dioecious)back to top |