mRNA_A-nodosum_M_contig9069.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9069.1.1
Unique NamemRNA_A-nodosum_M_contig9069.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9069.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9069contigA-nodosum_M_contig9069:1478..2582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size535
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870355.604475-CDS-A-nodosum_M_contig9069:1477..15411680870355.604475-CDS-A-nodosum_M_contig9069:1477..1541Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9069 1478..1541 -
1680870355.6183743-CDS-A-nodosum_M_contig9069:2111..23411680870355.6183743-CDS-A-nodosum_M_contig9069:2111..2341Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9069 2112..2341 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870355.631879-UTR-A-nodosum_M_contig9069:2341..25821680870355.631879-UTR-A-nodosum_M_contig9069:2341..2582Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9069 2342..2582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9069.1.1prot_A-nodosum_M_contig9069.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9069 1478..2341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9069.1.1

>prot_A-nodosum_M_contig9069.1.1 ID=prot_A-nodosum_M_contig9069.1.1|Name=mRNA_A-nodosum_M_contig9069.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
MEGQGAARPRVYGMTWLRIPYKYAGLFIPLSINSDFVSRYQYGVPLEGEK
GTWAGQGRAGQGERLSRKEGKGEVTGERGERREEKRGDRRQKHDRRQK
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mRNA from alignment at A-nodosum_M_contig9069:1478..2582-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9069.1.1 ID=mRNA_A-nodosum_M_contig9069.1.1|Name=mRNA_A-nodosum_M_contig9069.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1105bp|location=Sequence derived from alignment at A-nodosum_M_contig9069:1478..2582- (Ascophyllum nodosum dioecious)
ATTGCATGTCGGTATGGTACGGTACTGTGCTACAGTATTGCACCTGGTCT
TTATTATATTATAGTAATTCTAGTAGTTGATAATCTGCAAGAAGTATGCG
TGGAGCTTGGTGTTGGGTGGGGCAATATTTCAATATTTCCGTTTCCAATA
TCTCGCCCGTTTGTTTGTTTGGTACTGGTAGTACTGGTACCAGTTAACAG
GAAGGAATTGTTTTCGTTTTCGCTGAGGCGGGTGGTTGTCTATGGAGGGC
CAGGGTGCGGCACGGCCCCGGGTATATGGTATGACATGGTTACGAATACC
GTACAAGTACGCTGGGCTTTTTATTCCTCTGTCTATTAATAGTGACTTTG
TATCGAGGTACCAGTACGGAGTACCATTGGAGGGCGAGAAAGGAACATGG
GCAGGGCAGGGCAGGGCAGGGCAAGGAGAAAGGCTGTCAAGGAAGGAGGG
GAAGGGCGAGGTGACAGGTGAGTCGCTGTCTGTTGTGGTTATGGTTGTGG
TTGTGCCCTGAGAGAGGGAGGCGCGGATTGATTGCAGATTGCAGATTGCT
TCGACTTAACTATTTCGCGCTCGTATTTCAAAGTACTGTATGTTGATAAA
CGTTAAAAGTGTCTTATCTGCGCTGTTTCGATAAAGCTTCACGTAATGTT
CGGTCGTCATGGTTCTGTGCTTACCGATCGATGTCGCCGTGTTTCCCTCG
CCACCTGCTGTCTGCCGGTTCGCGCGGTATTAAATTTTGCAAGAGGAGAA
GAGAGGGGAACAGGCGGCACAAGCATGACAGAAGGCAAAAGGGATTGAGG
TGAGAGAGCTGAATTTAATTTTCGTCAAGTAATAGTTCGGAGAAAGGAAT
TTCAGCGCCGGCGGGCCTCCTTCTCGAGGGCAAGATCTGTTGCTAAAAAT
TACAAGTGTCTTGTGTGCACTCTTTCGATAAAGCTTCACGTAATGTTCGG
TCGTCATGGTTCTGTTCTTACCGATCGATGTCGCCGTGCTTCCTCATCGC
CTGCCGTCTGTCGGTTCGCGCGGTTTTAAACTTTGCAAGAGGAGGGGGGA
GAGGAGAGAAGAGAAGAGAGGGGACAGGCGGCAAAAGCATGACAGGCGGC
AAAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9069:1478..2582-

>mRNA_A-nodosum_M_contig9069.1.1 ID=mRNA_A-nodosum_M_contig9069.1.1|Name=mRNA_A-nodosum_M_contig9069.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig9069:1478..2582- (Ascophyllum nodosum dioecious)
ATGGAGGGCCAGGGTGCGGCACGGCCCCGGGTATATGGTATGACATGGTT
ACGAATACCGTACAAGTACGCTGGGCTTTTTATTCCTCTGTCTATTAATA
GTGACTTTGTATCGAGGTACCAGTACGGAGTACCATTGGAGGGCGAGAAA
GGAACATGGGCAGGGCAGGGCAGGGCAGGGCAAGGAGAAAGGCTGTCAAG
GAAGGAGGGGAAGGGCGAGGTGACAGGTGAGAGGGGGGAGAGGAGAGAAG
AGAAGAGAGGGGACAGGCGGCAAAAGCATGACAGGCGGCAAAAG
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