mRNA_A-nodosum_M_contig905.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig905.17.1
Unique NamemRNA_A-nodosum_M_contig905.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig905.17.1 vs. uniprot
Match: A0A6H5KVS5_9PHAE (GUN4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS5_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.240e-62
Identity = 88/104 (84.62%), Postives = 97/104 (93.27%), Query Frame = 1 
Query:    1 DMATMENLWIKYSDGKFGYSVQRDLWRKTKGDFENFCRRIGWTTTNSEVPPVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTEWQWK 312
            D+ATMENLW+ YS GKFGYSVQ+DLWRKTKGDFENFCRRIGWTT ++EV   ERKLRWFGANEFIYDVD+AP+GHLPLTSALRGTTLLKELM HPVW+TEW+WK
Sbjct:  157 DLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEV---ERKLRWFGANEFIYDVDRAPRGHLPLTSALRGTTLLKELMMHPVWETEWEWK 257
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BLAST of mRNA_A-nodosum_M_contig905.17.1 vs. uniprot
Match: A0A836C7C7_9STRA (GUN4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7C7_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.950e-52
Identity = 74/101 (73.27%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 DMATMENLWIKYSDGKFGYSVQRDLWRKTKGDFENFCRRIGWTTTNSEVPPVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTEW 303
            D+AT+E LW+KYS GKFGYSVQ ++W++ KGDFENFCR IGW T + E+   ERKLRWFGANEFIYD ++APKGHLPLTSALRGT LLKEL+ HPVW+TEW
Sbjct:  125 DLATIEKLWLKYSGGKFGYSVQAEVWKRKKGDFENFCRTIGWNTKSEEI---ERKLRWFGANEFIYDAERAPKGHLPLTSALRGTQLLKELLNHPVWETEW 222
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BLAST of mRNA_A-nodosum_M_contig905.17.1 vs. uniprot
Match: A0A8J9TSA2_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TSA2_PHATR)

HSP 1 Score: 161 bits (408), Expect = 1.890e-49
Identity = 72/104 (69.23%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:    1 DMATMENLWIKYSDGKFGYSVQRDLWRKTKGDFENFCRRIGWTTTNSEVPPVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTEWQWK 312
            D+ATME LW K+S+GKFGYSVQ+  WR+ KGDFE FCR+IGWT T+ E+   ERK RWFGA+EFIYDV KAP+GHLPLTSALRGT+L+K+++ HPVWD E  WK
Sbjct:   17 DLATMERLWNKFSNGKFGYSVQKRKWRQCKGDFEAFCRKIGWTATDGEI---ERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKQILNHPVWDDE-DWK 116
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BLAST of mRNA_A-nodosum_M_contig905.17.1 vs. uniprot
Match: A0A7S1XQG5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQG5_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.860e-48
Identity = 68/101 (67.33%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    1 DMATMENLWIKYSDGKFGYSVQRDLWRKTKGDFENFCRRIGWTTTNSEVPPVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTEW 303
            D+ATME LW+ YS GKFGY+VQ+ +W+  KG F+NFCR+IGW T + E+   ERKL+WFGANEFIYD++KAPKGHLPLT+ALRGT LL+ L++HPVW+TEW
Sbjct:  113 DLATMERLWLLYSKGKFGYTVQKRIWKLQKGSFDNFCRKIGWNTKDGEI---ERKLKWFGANEFIYDLEKAPKGHLPLTAALRGTPLLERLISHPVWETEW 210
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BLAST of mRNA_A-nodosum_M_contig905.17.1 vs. uniprot
Match: A0A1Z5KQ11_FISSO (GUN4 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQ11_FISSO)

HSP 1 Score: 162 bits (409), Expect = 3.630e-48
Identity = 74/104 (71.15%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    1 DMATMENLWIKYSDGKFGYSVQRDLWRKTKGDFENFCRRIGWTTTNSEVPPVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTEWQWK 312
            D+ATME LW K+S GKFGYSVQ+  W ++KGDFE FCR+IGWTTT+ EV   ERK RWFGA+EFIYDV KAP+GHLPLTSALRGT+L+K L+ HPVWD E  WK
Sbjct:  125 DLATMERLWNKFSKGKFGYSVQKKKWNQSKGDFEVFCRKIGWTTTDGEV---ERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKSLLKHPVWDNE-DWK 224
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BLAST of mRNA_A-nodosum_M_contig905.17.1 vs. uniprot
Match: A0A7R9YVG1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YVG1_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.470e-47
Identity = 71/104 (68.27%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 DMATMENLWIKYSDGKFGYSVQRDLWRKTKGDFENFCRRIGWTTTNSEVPPVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTEWQWK 312
            D+AT+E LW K+S GKFGY+VQ+  W+++KGDFE FCR+IGWTTT+ EV   ERK RWFGA+EF YDV KAP+GHLPLTSALRGT+L+KEL+THPVW+ +  WK
Sbjct:  129 DLATIERLWSKFSGGKFGYTVQKKKWKQSKGDFEVFCRKIGWTTTDGEV---ERKKRWFGASEFTYDVKKAPEGHLPLTSALRGTSLIKELLTHPVWEND-DWK 228
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BLAST of mRNA_A-nodosum_M_contig905.17.1 vs. uniprot
Match: B8C9C4_THAPS (GUN4 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9C4_THAPS)

HSP 1 Score: 155 bits (391), Expect = 1.990e-46
Identity = 67/97 (69.07%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 DMATMENLWIKYSDGKFGYSVQRDLWRKTKGDFENFCRRIGWTTTNSEVPPVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVW 291
            D+AT+E LW K+S GKFGYSVQ+ +W+K+KGDFE +C +IGWTT + E+   ERK RWFGA+EF YDV KAPKGHLPLTSALRGT+L+KEL+ HPVW
Sbjct:   58 DLATIERLWTKFSGGKFGYSVQKQIWKKSKGDFEVWCNKIGWTTKDGEI---ERKKRWFGASEFTYDVKKAPKGHLPLTSALRGTSLIKELLNHPVW 151
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BLAST of mRNA_A-nodosum_M_contig905.17.1 vs. uniprot
Match: A0A7S2UF66_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF66_9STRA)

HSP 1 Score: 157 bits (397), Expect = 2.750e-46
Identity = 70/104 (67.31%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    1 DMATMENLWIKYSDGKFGYSVQRDLWRKTKGDFENFCRRIGWTTTNSEVPPVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTEWQWK 312
            D+ATME LW K+S GKFGYSVQ+  W+++KGDFE FC +IGWTT + +V   ERK RWFGA+EFIYDV KAP+GHLPLTSALRGT+LLK+++ HPVWD +  WK
Sbjct:  130 DLATMERLWNKFSKGKFGYSVQKKKWKQSKGDFEAFCSKIGWTTKDGDV---ERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLLKQMLNHPVWDND-DWK 229
[Close]
BLAST of mRNA_A-nodosum_M_contig905.17.1 vs. uniprot
Match: A0A7S2R3S6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3S6_9STRA)

HSP 1 Score: 157 bits (396), Expect = 4.890e-46
Identity = 70/104 (67.31%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:    1 DMATMENLWIKYSDGKFGYSVQRDLWRKTKGDFENFCRRIGWTTTNSEVPPVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTEWQWK 312
            D+AT+E LW K+S GKFGYSVQ+  WR++K DFE FCR+IGWTT + +V   ERK RWFGA+EFIYDV KAP+GHLPLTSALRGT+L+K+L+THPVW+ +  WK
Sbjct:  138 DLATIERLWNKFSGGKFGYSVQKKKWRQSKNDFEVFCRKIGWTTKDGDV---ERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKQLLTHPVWEND-DWK 237
[Close]
BLAST of mRNA_A-nodosum_M_contig905.17.1 vs. uniprot
Match: A0A7S2P4E3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P4E3_9STRA)

HSP 1 Score: 156 bits (394), Expect = 6.220e-46
Identity = 70/104 (67.31%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    1 DMATMENLWIKYSDGKFGYSVQRDLWRKTKGDFENFCRRIGWTTTNSEVPPVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTEWQWK 312
            D+AT+E LW K+S GKFGY+VQ+  WR++KGDFE FCR+IGWTT + EV   ERK RWFGA+EFIYDV KAP+GHLPLTSALRGT L+K L+ HPVW+ +  WK
Sbjct:  122 DLATIERLWNKFSGGKFGYTVQKKKWRQSKGDFEAFCRKIGWTTQDGEV---ERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTPLIKNLLNHPVWEND-DWK 221
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig905.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVS5_9PHAE1.240e-6284.62GUN4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836C7C7_9STRA1.950e-5273.27GUN4 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A8J9TSA2_PHATR1.890e-4969.23Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A7S1XQG5_9STRA1.860e-4867.33Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A1Z5KQ11_FISSO3.630e-4871.15GUN4 domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7R9YVG1_9STRA2.470e-4768.27Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B8C9C4_THAPS1.990e-4669.07GUN4 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S2UF66_9STRA2.750e-4667.31Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2R3S6_9STRA4.890e-4667.31Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2P4E3_9STRA6.220e-4667.31Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig905contigA-nodosum_M_contig905:250618..251449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr15980
PFAMsGUN4
Model size315
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.47e-49
EggNOG OGs28PU6@1|root,2QWGS@2759|Eukaryota,2XCTR@2836|Bacillariophyta
Ec32 ortholog descriptiontetrapyrrole-binding protein
Ec32 orthologEc-08_001130.1
DescriptionGUN4-like
Cds size312
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870354.776874-CDS-A-nodosum_M_contig905:250617..2507791680870354.776874-CDS-A-nodosum_M_contig905:250617..250779Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 250618..250779 -
1680870354.7958076-CDS-A-nodosum_M_contig905:251296..2514461680870354.7958076-CDS-A-nodosum_M_contig905:251296..251446Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 251297..251446 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870354.807412-UTR-A-nodosum_M_contig905:251446..2514491680870354.807412-UTR-A-nodosum_M_contig905:251446..251449Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig905 251447..251449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig905.17.1prot_A-nodosum_M_contig905.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig905 250618..251446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig905.17.1

>prot_A-nodosum_M_contig905.17.1 ID=prot_A-nodosum_M_contig905.17.1|Name=mRNA_A-nodosum_M_contig905.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=104bp
MATMENLWIKYSDGKFGYSVQRDLWRKTKGDFENFCRRIGWTTTNSEVPP
VERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTEW
QWK*
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mRNA from alignment at A-nodosum_M_contig905:250618..251449-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig905.17.1 ID=mRNA_A-nodosum_M_contig905.17.1|Name=mRNA_A-nodosum_M_contig905.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=832bp|location=Sequence derived from alignment at A-nodosum_M_contig905:250618..251449- (Ascophyllum nodosum dioecious)
GATATGGCAACTATGGAAAACTTGTGGATCAAGTACAGCGATGGCAAATT
CGGGTACAGCGTCCAGAGAGACCTTTGGCGTAAGACGAAGGGAGACTTCG
AAAACTTCTGCCGTCGGATCGGCTGGACCACCACCAACTCGGAGGTGCCA
CCAGTTTACGCGGCCTTCTAGTTTCGTGAATCGTGCTGATATTAGATTTA
AGACATGGCATACAGTACTGAGCTATTGTTTCATTTGTTTGTAACCTTGC
TCTTTGCGGTTCGCGGTACCTGTAAACCCCAAAGCACGCGCTCTGCTCCT
AACTGTGTGCGATGAGCGTGTGCGACGAGCGATGAAGTAATAGAGTAGTC
GCGTTTTGGCATTGCTTCGTTCTCTTGGTGGATTCGGGGTTTCGAGCTTT
AGTCACTGAAATTTATACAGTTGCGCGATCGCCGAATCAATCGAAATTCT
AGTGGCTTATAATGCACGTGCAACCCTCGACGAGGGTCGCTCCCTCCCGC
AGCTGCAGCACATCGTGCGGACGGCCTACCGATCCTGCCATTTAGTTGTC
TCCATTACTGCCGTTGAAAACGAAAACATTTTCCGGACTCCACGTATTCC
GAACCTAGCCCCAACCGTTGTGCCCTCCACGCCCCAACCGTTGTGCGTCT
GACTAAAACTCTATTGATAGGTCGAACGCAAGTTGCGATGGTTCGGCGCG
AACGAGTTTATCTACGACGTCGACAAGGCCCCCAAAGGACACCTGCCCCT
TACGAGTGCCTTGAGAGGCACCACGCTACTCAAGGAGCTCATGACGCATC
CTGTTTGGGACACGGAGTGGCAATGGAAGTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig905:250618..251449-

>mRNA_A-nodosum_M_contig905.17.1 ID=mRNA_A-nodosum_M_contig905.17.1|Name=mRNA_A-nodosum_M_contig905.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at A-nodosum_M_contig905:250618..251449- (Ascophyllum nodosum dioecious)
ATGGCAACTATGGAAAACTTGTGGATCAAGTACAGCGATGGCAAATTCGG
GTACAGCGTCCAGAGAGACCTTTGGCGTAAGACGAAGGGAGACTTCGAAA
ACTTCTGCCGTCGGATCGGCTGGACCACCACCAACTCGGAGGTGCCACCA
GTCGAACGCAAGTTGCGATGGTTCGGCGCGAACGAGTTTATCTACGACGT
CGACAAGGCCCCCAAAGGACACCTGCCCCTTACGAGTGCCTTGAGAGGCA
CCACGCTACTCAAGGAGCTCATGACGCATCCTGTTTGGGACACGGAGTGG
CAATGGAAGTAA
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