mRNA_A-nodosum_M_contig905.12.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig905.12.2
Unique NamemRNA_A-nodosum_M_contig905.12.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig905.12.2 vs. uniprot
Match: A0A6H5KPH2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH2_9PHAE)

HSP 1 Score: 523 bits (1346), Expect = 9.530e-165
Identity = 337/799 (42.18%), Postives = 420/799 (52.57%), Query Frame = 1
Query:    1 VMLPLLDWKDWSTDRLHWTYPAVVRAFPTCLFD-----------------------------PVGASP---ESRGQRSERRAHQTQRSR--GADANGAKRGRETRDIDDVVWAQSSRLPCPFEPYSLGEVFVRSTTDEDLAVVGVGGGPWRRRWLVLLQTYLFELLQPP-PQVCRRFLSPSPL----------PPPSRSRLAATSTSM----GGRGGDGGVEGAGGGTLFKGASAAKVHVKRSLKEQEKQARAEGT-------------------------EKIEEEEAERLVAPAGFLCLSRASVKDGGRDWGPRTLLLRCLTR------------PPEISREEASSRGAGG--NTNISSASFCGGNGEEEICVELRVPSEDVGTQWTELFRSRAVLEMSTIFEPTEPDFETR------------HPENEDIEEGEDLRKGSGSGGGLEAKAPLETDASFSVVGTGRFSKVVWAKRRRPWGTGVVRKEGGDRLSTVKKIVDKQAFWARVRSGKERADALAREVFCQTVLTRHNTDVDDS-----------FDAISKREGVTSEARHGGSYNQPRFGCDC--GGGIVRLHSVLETATELVLEMDLMSRIDLFHRLEQR-GKFSEPEAASIIHNTLVTIDKCQARGFCHRDVKPSNLLYPTPTSMHGPECVALTNFGMATMVGQDGLVRGRCGTSGYVAPEILKAQKHEGYSGNVDVFSAGVVLYACLCGYEPFYGVDDHQLLAANKAAVVKFHELEWEHVSQGARDLVSKMLESDPSKRISSREALRHPWVASNRRRAH 2055
            VM+PL++W DW+ DRLHWTYPAVV AFP CL++                             PV A     E+RGQ S     Q    +  G D   +  G    D +  V A  +  P PFEP SLGEV++R+    DLA  GVG GPWRRRWLVL QTY+FELL+PP P V    L+                P    +A   T++      RGGD G   A                 R L +++ Q R  G                                 A++ VAP GF+CLS+ASV+DGG DWGP+TLLL C  +            PP                + ++ +    G     +ICVELRVPS ++G +W  LFR RA LEM+++FEP  PDFE                            + SG       +  +ETD  FSV+GTGRFS+VVWA+R+RPW         G  +S +K IV+KQAFW+RVR GKER D LAREVFCQT LT    +                            +  G         CD   GGGIVR+HS+ ETA +L+LEMDLMSR DLF RL +R G FSE EAA +  N L+ IDKC   GFCHRDVK SNLLYP P S HGPECV L +FGMAT  G+DGLVRGRCGTSGYVAPEILKA K EGY  NVD+FSAGVVLY CLCG+EPF+GV +  ++AANK A  +F    W+ +S+GA+DL+ +M+E DP++RI+ +EALRH W+  +R   H
Sbjct:  525 VMMPLMNWDDWTPDRLHWTYPAVVHAFPRCLYEAASXXXXXXXXQEGTRRNRCRSDGAPAIPPVAAGEVPREARGQASGVLLPQGGNGKRDGPDEETSPLGAAVVDREAEVAAAGAIPPSPFEPLSLGEVYIRTAPASDLAPAGVGAGPWRRRWLVLRQTYMFELLEPPSPPVPTLVLASGQAGXXXXXXXXXXXPLSDAVAVDGTAVFFGSRSRGGDEGGATAVEXXXXXXXXXXXXXKVRKLDQEQPQQRLPGEMGPXXXXXXXXXXXXXRGXXXXXXXXXXXXXGAQQYVAPVGFVCLSKASVEDGGIDWGPKTLLLSCGAKLAPRTSLAKRLAPPXXXXXXXXXXXXXXXXSASVRARRRVG----TKICVELRVPSPEIGERWAALFRERAALEMASLFEPCPPDFEDNTKGXXXXXXXXXXXXXXXXXXXXXXXRFSGV-----TEGAVETDTGFSVLGTGRFSRVVWARRKRPWA------RAGGSVSAIK-IVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGAEAASGAAXXXXXXXXXXXXXXXXXXXXXXSSRGAGGPGAVGACDGAGGGGIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGAFSEREAAGLTRNLLLAIDKCNRLGFCHRDVKLSNLLYPGPASTHGPECVLLADFGMATTAGRDGLVRGRCGTSGYVAPEILKAGKQEGYGMNVDIFSAGVVLYICLCGFEPFFGVTEKDVIAANKEAAFEFPPEAWDDISEGAKDLIRQMMEPDPARRITPQEALRHSWIVQHRTSLH 1307          
BLAST of mRNA_A-nodosum_M_contig905.12.2 vs. uniprot
Match: D7FZN9_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN9_ECTSI)

HSP 1 Score: 471 bits (1213), Expect = 1.540e-151
Identity = 311/709 (43.86%), Postives = 376/709 (53.03%), Query Frame = 1
Query:    1 VMLPLLDWKDWSTDRLHWTYPAVVRAFPTCLFDPVGASPESRGQRSERRAHQTQRSRGADA-------NGAK------------RGRETR----DIDDVVW-------------AQSSRLPCPFEPYSLGEVFVRSTTDEDLAVVGVGGGPWRRRWLVLLQTYLFELLQPPPQVCRRFLSPSPLPPPSRSRLAATSTSMGGRGGDGGVEGAGGGTLFKGASAAKVH----VKRSLKEQEKQARA-----------------EGTEKIEEEEAERLVAPAGFLCLSRASVKDGGRDWGPRTLLLRCLTRPPEISREEASSRGA---------GGNTNISSASFCGGNGEEEICVELRVPSEDVGTQWTELFRSRAVLEMSTIFEPTEPDFETRHPENEDIEEGEDLRKGSGSGGG---------------------LEAKAPLETDASFSVVGTGRFSKVVWAKRRRPWGTGVVRKEGGDRLSTVKKIVDKQAFWARVRSGKERADALAREVFCQTVLTRHNTDVDDS---------------FDAISKREGVTSEARHGGSYNQPRFGCDC--GGGIVRLHSVLETATELVLEMDLMSRIDLFHRLEQR-GKFSEPEAASIIHNTLVTIDKCQARGFCHRDVKPSNLLYPTPTSMHGPECVALTNFGMATMVGQDGLVRGRCGTSGYVAPEILKAQKHEGYSGNVDVFS 1812
            VM+PL++W DW+ DRLHWTYPAVV AFP CL++    +     Q   RR     RS GA A        GA+            +GR+ +    D +   W             A ++  P PFEP SLGEV +R+    DLA  GVG GPWRRRWLVL QTY+FELL+PP              PP  + + A+     GR G G   GA                   V++  +EQ +Q R                  EG E  ++  A++ VAP GF CLS+ASV+DGG +WGP+TLLLRC  RP +ISREEAS+            GG  ++ +    G     +ICVELRVPS +VG +W  LFR RA LEM+++FEP+ PDFE             D  KG GSG                         A+  +ETD  FSV+GTGRFS+VVWA+R+RPW         G  +S +K IV+KQAFW+RVR GKER D LAREVFCQT LT    D                                   G    +    CD   GGGIVR+HS+ ETA +L+LEMDLMSR DLF RL +R G  SE EAA +  N L  IDKC   GFCHRDVK SNLLYP P S HGPECV L +FGMAT  G+DGLVRGRCGTSGYVAPEILKA K EGY  NVD+FS
Sbjct:   62 VMMPLMNWDDWTPDRLHWTYPAVVHAFPRCLYEAANTTXXXXXQGGTRRNRC--RSDGAPAMPPVAAGEGAREARGRASGVPLPQGRDGKRDGPDEETSPWGAAVVDREAEAAEAAAANPPSPFEPLSLGEVSIRTAPASDLAPAGVGAGPWRRRWLVLRQTYMFELLEPPS-------------PPVPTLVLAS-----GRSGAGDEVGAAXXXXXXXXXXXXXXXXXXVRKLDQEQPQQQRLPGEMGPXXXXXXXXXXDEGREGNDDGGAQKYVAPVGFACLSKASVEDGGINWGPKTLLLRCQARPADISREEASAAAVIGGGDGDVVGGIASVRARRRVG----TKICVELRVPSPEVGERWAALFRERAALEMASLFEPSPPDFE-------------DNTKGGGSGDSGXXXXXXXXXXXXXXXXXXXXXXAEGGVETDTGFSVLGTGRFSRVVWARRKRPWA------RAGGSVSAIK-IVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGADAASGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAGGAEAVVACDGTGGGGIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGALSEREAAGLTVNLLRAIDKCNRLGFCHRDVKLSNLLYPGPASTHGPECVLLADFGMATTAGRDGLVRGRCGTSGYVAPEILKAGKQEGYGMNVDIFS 726          
BLAST of mRNA_A-nodosum_M_contig905.12.2 vs. uniprot
Match: A0A836CCZ2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCZ2_9STRA)

HSP 1 Score: 236 bits (601), Expect = 2.970e-63
Identity = 146/341 (42.82%), Postives = 184/341 (53.96%), Query Frame = 1
Query: 1039 GGLEAKAPLETD-ASFSVVGTGRFSKVVWAKRRRPWGTGVVRKEGGDRLSTVKKIVDKQAFWARVRSGKERADALAREVFCQTVLTRHNTDVDDSFDAISKREGVTSEARHGGSYNQPRFGCDCGGG--IVRLHSVLETATELVLEMDLMSRIDLFHRLEQRGKFSEPEAASIIHNTLVTIDKCQARGFCHRDVKPSNLLYPTPTSMHGPECVA------LTNFGMATMVGQDGLVRGRCGTSGYVAPEILKAQKHEGYSGNVDVFSAGVVLYACLCGYEPFYGVDDHQLLAANKAAVVKFHELEWEHVSQGARDLVSKMLESDPSKRISSREALRHPWVA 2034
            G  +A+ P  T+ AS + +G GRF+ V  A+ R    +           S   KI DK  FW RV  G+ERAD L RE   Q  L+                         GG+      G   GG   +V+L +V ET    V+EM+LMSR +LFH L + G  SE EAA I+   L  +  CQARG  HRD+K SN+L P P       C A      L +FGMA  VG DG +RGRCGT GYVAPEIL+A  HE Y  NVD +S GVV Y  LCGYEPFYG  D +LLA NKA    F   +W  VS  A+D VS +++++P+ RI++ EAL HPW+A
Sbjct:  319 GTCDAERPSLTESASQATLGHGRFACVKKARARHSCASATA----AAGASCAVKIFDKAEFWRRVEIGQERADTLVREAAVQAALSSS-----------------------GGA------GAGSGGSDTVVQLRNVFETRDTFVVEMELMSRSNLFHELARAGVLSEREAAPILQCLLRAVAHCQARGIAHRDIKLSNILCPAPDGAGSRGCAAAAPVVKLGDFGMAGAVGADGCLRGRCGTPGYVAPEILRAGPHEPYGANVDAYSVGVVAYTLLCGYEPFYGETDAELLAQNKAGDFDFDMADWCDVSLSAQDFVSALMDANPATRITAAEALEHPWLA 626          
BLAST of mRNA_A-nodosum_M_contig905.12.2 vs. uniprot
Match: A0A7S2U7P4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7P4_9STRA)

HSP 1 Score: 228 bits (582), Expect = 6.190e-63
Identity = 136/320 (42.50%), Postives = 177/320 (55.31%), Query Frame = 1
Query: 1087 VVGTGRFSKVVWAKRRRPWGTGVVRKEGGDRLSTVKKIVDKQAFWARVRSGKERADALAREVFCQTVLTRHNTDVDDSFDAISKREGVTSEARHGGSYNQPRFGCDCGGGIVRLHSVLETATELVLEMDLMSRIDLFHRLEQRGKFSEPEAASIIHNTLVTIDKCQARGFCHRDVKPSNLLYPTPTSMHGPECVALTNFGMATMVGQDGLVRGRCGTSGYVAPEILKAQKHEGYSGNVDVFSAGVVLYACLCGYEPFYGVDDHQLLAANKAAVVKFHELEWEHVSQGARDLVSKMLESDPSKRISSREALRHPWVASNRR 2046
            V G GR++ V  AKR+         K   D      KIVDK  FW RV+  +ERAD L RE   Q  L+    +V DSF                                +R+    ET+  +VLE +++   DLF  + ++G   E EAA I+++ +  +   +  G  HRD+KP+N+L       HG   V + +FGMAT  G D LVRGRCGT GYVAPEI  A  + GY+  VDVFSAGV LY  LCGYEPFYG  D QL+AANK A V++ E +WE+VS+  RDLVSKML  DPS RI+  E L+HPW+A+ +R
Sbjct:  148 VFGKGRYATVHPAKRKF--------KNSSDTYDCTLKIVDKAEFWKRVKKTRERADTLVREAATQATLSAKYGNV-DSF--------------------------------LRISGFFETSENVVLEFEILEGTDLFEHISKKGVLEEVEAAHIMNDIMTGLQAMRRLGIAHRDIKPANILMCNKEK-HGV-FVKVADFGMATFAGVDNLVRGRCGTPGYVAPEIFHAGMNNGYACGVDVFSAGVTLYVLLCGYEPFYGESDAQLIAANKDADVEYSESDWENVSKEGRDLVSKMLNPDPSTRITIEEVLKHPWLANRQR 424          
BLAST of mRNA_A-nodosum_M_contig905.12.2 vs. uniprot
Match: A0A836CCD0_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCD0_9STRA)

HSP 1 Score: 228 bits (581), Expect = 4.680e-62
Identity = 143/349 (40.97%), Postives = 184/349 (52.72%), Query Frame = 1
Query: 1075 ASFSVVGTGRFSKVVWAKRRR---PWGTGVVRKEGG----DRLSTVKKIVDKQAFWARVRSGKERADALAREVFCQTVLTRHNTDVDDSFDAISKREGVTSEARHGGSYNQPRFGCDCGGGIVRLHSVLETATELVLEMDLMSRIDLFHRLEQRGKFSEPEAASIIHNTLVTIDKCQARGFCHRDVKPSNLLYPTPTSMHGPEC----VALTNFGMATMVGQDGLVRGRCGTSGYVAPEILKAQKHEGYSGN-VDVFSAGVVLYACLCGYEPFYGVDDHQLLAANKAAVVKFHELEWEHVSQGARDLVSKMLESDPSKRISSREALRHPWVASNRRRAHAKEDGGIDKG 2085
            A  + +G GR++ V  A+RR    P G      +      D      K++DK+ F+ RV  GKER DAL REV  Q VLT                      AR GG+        D G  IVRL    ET ++LVLE++LMS +DLF RL   G   + +AA+++ + L   D C   GF HRD+K SNL+YP      G       V L +FGMA  V   GL+ GRCGT GYVAPEI +A   EGY+   VD FS G V Y  LCGYEPFYG D+  L  AN+ A  +FH  EW  V   A+DLV+ +LE DP+KR++   AL HPW+     R HA+ +    +G
Sbjct:  172 ARGAELGRGRYTSVHRARRRALPPPQGPAAAAVDAAAAEHDLALCALKLIDKRRFFRRVAEGKERPDALVREVLAQAVLT----------------------ARCGGAAXXXXX--DGGCAIVRLRGAFETESQLVLELELMSGVDLFDRLSSGGVLGDADAAALVRSVLRAADFCARAGFAHRDIKLSNLIYPRRARDGGAAASAGDVRLADFGMAGRVDAQGLLHGRCGTPGYVAPEIWRAGLREGYAARGVDAFSIGAVAYTVLCGYEPFYGGDEGALARANRDARYEFHAPEWSRVPDDAKDLVAALLERDPTKRLTPAAALAHPWL-----RRHAEAEAATRRG 491          
BLAST of mRNA_A-nodosum_M_contig905.12.2 vs. uniprot
Match: A0A7S2KLW1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KLW1_9STRA)

HSP 1 Score: 228 bits (581), Expect = 4.680e-62
Identity = 132/314 (42.04%), Postives = 177/314 (56.37%), Query Frame = 1
Query: 1090 VGTGRFSKVVWAKRRRPWGTGVVRKEGGDRLSTVKKIVDKQAFWARVRSGKERADALAREVFCQTVLTRHNTDVDDSFDAISKREGVTSEARHGGSYNQPRFGCDCGGGIVRLHSVLETATELVLEMDLMSRIDLFHRLEQRGKFSEPEAASIIHNTLVTIDKCQARGFCHRDVKPSNLLYPTPTSMHGPECVALTNFGMATMVGQDGLVRGRCGTSGYVAPEILKAQKHEGYSGNVDVFSAGVVLYACLCGYEPFYGVDDHQLLAANKAAVVKFHELEWEHVSQGARDLVSKMLESDPSKRISSREALRHPWV 2031
            +G GR++ +  A+R    G+               K++DK  FW RV SG+ER D L REV  Q  LT                          G Y Q  F        V++H + ET    VLE++L+   DLF  +  +    E EAA I+ + L+++   +  G  HRDVK +N+L  T  +  G   V L ++GM T VG DGLVRGRCGT GYVAPEIL A  + GY   VD+FSAGVV+Y  LCGYEPFYG  D QL+AANKAA+++F EL++  VS  A+DLV+++L+SDP  RI + EAL+HPW+
Sbjct:  219 MGHGRYASIFKAQRVSSAGS-----------ECALKVIDKNEFWGRVSSGRERVDTLVREVAVQATLTS-------------------------GEY-QDFF--------VKIHGIFETTENFVLELELLDGTDLFRHISSKMVLEEYEAALIMRDILMSLATTRRLGIAHRDVKLANILMCTDFNGPGDVSVKLADYGMGTFVGVDGLVRGRCGTPGYVAPEILCAGTNCGYGNKVDLFSAGVVMYVLLCGYEPFYGETDAQLIAANKAAIIEFDELDFAGVSDEAKDLVAQLLDSDPRSRIDAAEALQHPWI 487          
BLAST of mRNA_A-nodosum_M_contig905.12.2 vs. uniprot
Match: A0A7S1BGP7_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BGP7_9STRA)

HSP 1 Score: 226 bits (575), Expect = 5.960e-62
Identity = 141/329 (42.86%), Postives = 180/329 (54.71%), Query Frame = 1
Query: 1057 APLETDASFSV---VGTGRFSKVVWAKRRRPWGT-GVVRKEGGDRLSTVKKIVDKQAFWARVRSGKERADALAREVFCQTVLTRHNTDVDDSFDAISKREGVTSEARHGGSYNQPRFGCDCGGGIVRLHSVLETATELVLEMDLMSRIDLFHRLEQRGKFSEPEAASIIHNTLVTIDKCQARGFCHRDVKPSNLLYPTPTSMHGPECVALTNFGMATMVGQDGLVRGRCGTSGYVAPEILKAQKHEGYSGNVDVFSAGVVLYACLCGYEPFYGVDDHQLLAANKAAVVKFHELEWEHVSQGARDLVSKMLESDPSKRISSREALRHPWV 2031
            A L TD  + V   +G GR+++V  A+RR P G  G +R           K++ K  FW RV  G+ER D L RE+  Q+ LT H                   E R       P F        VRLH V ET   LVLE+D     DLF  + +R   +EP AA I  + L  +   +  G  HRD+K +NL+            V L++FGM+  V  DGL+RGRCGT GYVAPEIL A  + GY  NVD+FSAGVVLY  LCGYEPFYG  D QL+A+N+ A V+FHE EW  VS  A+DL+ KM+E D +KRI  +EAL+H W+
Sbjct:  130 ARLTTDDLYQVGEELGRGRYARVRRARRRAPGGDPGPLR---------ALKVIHKADFWRRVARGEERQDTLVRELLVQSHLTAH----------------ARGERR-------PDF--------VRLHGVFETEAHLVLEVDHARSRDLFQYVREREVLAEPHAAQIAGDVLRALAMLRKHGVAHRDLKLANLILE---ERERRVAVWLSDFGMSAFVDGDGLLRGRCGTPGYVAPEILAAGVNSGYDPNVDIFSAGVVLYIMLCGYEPFYGETDKQLIASNRRAEVEFHEGEWTDVSAEAKDLIRKMMEKDTTKRIQPQEALKHSWI 415          
BLAST of mRNA_A-nodosum_M_contig905.12.2 vs. uniprot
Match: A0A7S3PNM5_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PNM5_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.300e-60
Identity = 132/344 (38.37%), Postives = 188/344 (54.65%), Query Frame = 1
Query: 1045 LEAKAPLETDASFSV----VGTGRFSKVVWAKRRRPWGTGVVRKEGGDRLSTVKKIVDKQAFWARVRSGKERADALAREVFCQTVLTRHNTDVDDSFDAISKREGVTSEARHGGSYNQPRFGCDCGGGIVRLHSVLETATELVLEMDLMSRIDLFHRLEQRGKFSEPEAASIIHNTLVTIDKCQARGFCHRDVKPSNLLYPTPTSMHGPECVALTNFGMATMVGQDGLVRGRCGTSGYVAPEILKAQKHEGYSGNVDVFSAGVVLYACLCGYEPFYGVDDHQLLAANKAAVVKFHELEWEHVSQGARDLVSKMLESDPSKRISSREALRHPWVASNRRRAHAKE 2064
            L   A L+ +  + V    +G GRF+ VV A+R          K+ G   +   K V+K+ FW+ V  GKER D ++RE+  Q  LT  + D               SE R             CGG IV+L  + ET   LV+EMDLM R+DLF  + ++ + SE   A II +   TI         HRD+K SN+++P  +         LT+FGMA  V  DGL++GRCGT GYVAPEIL A+ ++GY   VD+FS GV+ Y  LCGYEPF+G D+ +L+++NK A   F + EW H+S  A++L+  +L  DP +R+S  + L HPW+ +N  + + KE
Sbjct:  136 LRTAADLQIEDLYLVYNNKIGQGRFAHVVPAQR----------KDDGSMCAV--KFVNKRDFWSLVEVGKERNDTISREIATQLYLTHLSQD--------------RSEKR-------------CGG-IVKLRDIFETKDFLVMEMDLMDRVDLFQLVSKKKRLSENHTARIIKHLAKTIQMLWRAKIAHRDLKLSNIVFPVSSDKSAYLRPKLTDFGMAAFVDTDGLLKGRCGTPGYVAPEILAAKPNQGYFNRVDMFSLGVICYTLLCGYEPFFGEDERKLISSNKKAHFDFDDREWSHISIHAKNLIRGLLHKDPQQRLSPEQVLEHPWILANNSKFNRKE 439          
BLAST of mRNA_A-nodosum_M_contig905.12.2 vs. uniprot
Match: A0A835YTK6_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTK6_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.150e-58
Identity = 113/233 (48.50%), Postives = 141/233 (60.52%), Query Frame = 1
Query: 1417 IVRLHSVLETATELVLEMDLMSRIDLFHRLEQRGKFSEPEAASIIHNTLVTIDKCQARGFCHRDVKPSNLLYPT----------PTSMHGPECVALTNFGMATMVGQDGLVRGRCGTSGYVAPEILKAQKHEGYSGNVDVFSAGVVLYACLCGYEPFYGVDDHQLLAANKAAVVKFHELEWEHVSQGARDLVSKMLESDPSKRISSREALRHPWVASNRRRAHAKEDGGIDKG 2085
            IVRL S  ET + LVLE++LMS +DLF RL   G  S+ EAA ++ N L     C   G  HRD+K SNL+YP             +   P CV L +FGM  +  + GL+ GRCGT GYVAPEIL A  + GY+GNVD FS GVV Y  LCGYEPFYGV++  L+AANKA   +FH  EWE V   A+DLV+ +LE DP+KR++   AL HPW+       HA  +   D G
Sbjct:    1 IVRLRSAFETESLLVLELELMSGVDLFDRLSSGGVLSDAEAAGLVRNVLRAASFCARLGMAHRDIKLSNLIYPRRXXXXXXXXXXXACADPRCVRLGDFGMVGLHDKAGLLHGRCGTPGYVAPEILHAGVNAGYAGNVDAFSIGVVAYTVLCGYEPFYGVNERLLIAANKAGRYEFHMPEWEGVPDDAKDLVAALLERDPAKRLTPEAALSHPWLL-----RHAPYNDAADAG 228          
BLAST of mRNA_A-nodosum_M_contig905.12.2 vs. uniprot
Match: A0A6S8T6Q0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8T6Q0_9STRA)

HSP 1 Score: 225 bits (573), Expect = 2.590e-58
Identity = 130/350 (37.14%), Postives = 189/350 (54.00%), Query Frame = 1
Query: 1066 ETDASFSVVGTGRFSKVVWAKRRR---------------PWGTGVVRKEGG-------------DRLSTVKKIVDKQAFWARVRSGKERADALAREVFCQTVLTRHNTDVDDSFDAISKREGVTSEARHGGSYNQPRFGCDCGGGIVRLHSVLETATELVLEMDLMSRIDLFHRLEQRGKFSEPEAASIIHNTLVTIDKCQARGFCHRDVKPSNLLYPTPTSMHGPECVALTNFGMATMVGQDGLVRGRCGTSGYVAPEILKAQKHEGYSGNVDVFSAGVVLYACLCGYEPFYGVDDHQLLAANKAAVVKFHELEWEHVSQGARDLVSKMLESDPSKRISSREALRHPWV 2031
            E + S   +G GRF+ V   +RRR               P G G+++K+               ++     KI+DK  FW RVR GKERAD++ RE   Q  L                                     D   G +R+ S  ET  ++VLE++L+  +DLF  +  R +  E E+A+I+++ L ++D  +  G  HRD+KP+N+L  +    +G + V L +FGM T VG+D LVRGRCGT GYVAPEI+ A  + GY+ +VD+FSAGV++Y  LCGYEPFYG  + +L+  NK   V++ E +W  +S   RDL+ KMLE DPSKR+ + +AL+HPW+
Sbjct:  532 EYNRSSRPLGKGRFATVYAGRRRRGEGHSTNQNEIHTKAPGGNGILKKKPSFTSLLSHDKPLAREQCDCAIKIIDKDKFWERVRKGKERADSIVRETAVQAALLAD---------------------------------MDIYPGFLRVRSFFETLDKVVLELELLQGMDLFRYVSSRDEIGEVESANIMYDILRSVDAMKKLGIAHRDIKPANILMASEGE-NGVK-VKLGDFGMGTFVGEDNLVRGRCGTPGYVAPEIMSAAINGGYANDVDMFSAGVIMYILLCGYEPFYGESEEELINENKRGKVEYPEDDWRDISVEGRDLLEKMLEKDPSKRVQADKALQHPWI 846          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig905.12.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPH2_9PHAE9.530e-16542.18Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FZN9_ECTSI1.540e-15143.86Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A836CCZ2_9STRA2.970e-6342.82Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S2U7P4_9STRA6.190e-6342.50Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A836CCD0_9STRA4.680e-6240.97Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S2KLW1_9STRA4.680e-6242.04Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1BGP7_9STRA5.960e-6242.86Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S3PNM5_9STRA1.300e-6038.37Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A835YTK6_9STRA1.150e-5848.50Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6S8T6Q0_9STRA2.590e-5837.14Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig905contigA-nodosum_M_contig905:211807..218261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZN9
PFAMsCAP_GLY,EF-hand_7,I-set,Metallophos,PPP5,Pkinase
Model size2571
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons8
Evalue2.46e-153
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-08_001170.1
Descriptionprotein serine/threonine kinase activity
Cds size2100
COG categoryT
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig905.12.2prot_A-nodosum_M_contig905.12.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig905 212275..218258 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870354.607344-UTR-A-nodosum_M_contig905:211806..2122741680870354.607344-UTR-A-nodosum_M_contig905:211806..212274Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig905 211807..212274 -
1680870354.749654-UTR-A-nodosum_M_contig905:218258..2182611680870354.749654-UTR-A-nodosum_M_contig905:218258..218261Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig905 218259..218261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870354.6211782-CDS-A-nodosum_M_contig905:212274..2124181680870354.6211782-CDS-A-nodosum_M_contig905:212274..212418Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 212275..212418 -
1680870354.6367054-CDS-A-nodosum_M_contig905:212885..2130321680870354.6367054-CDS-A-nodosum_M_contig905:212885..213032Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 212886..213032 -
1680870354.6531885-CDS-A-nodosum_M_contig905:213856..2139411680870354.6531885-CDS-A-nodosum_M_contig905:213856..213941Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 213857..213941 -
1680870354.6767528-CDS-A-nodosum_M_contig905:214784..2149421680870354.6767528-CDS-A-nodosum_M_contig905:214784..214942Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 214785..214942 -
1680870354.701546-CDS-A-nodosum_M_contig905:215541..2156521680870354.701546-CDS-A-nodosum_M_contig905:215541..215652Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 215542..215652 -
1680870354.7168145-CDS-A-nodosum_M_contig905:216310..2165741680870354.7168145-CDS-A-nodosum_M_contig905:216310..216574Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 216311..216574 -
1680870354.7282147-CDS-A-nodosum_M_contig905:216852..2171131680870354.7282147-CDS-A-nodosum_M_contig905:216852..217113Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 216853..217113 -
1680870354.737981-CDS-A-nodosum_M_contig905:217328..2182581680870354.737981-CDS-A-nodosum_M_contig905:217328..218258Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 217329..218258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig905.12.2

>prot_A-nodosum_M_contig905.12.2 ID=prot_A-nodosum_M_contig905.12.2|Name=mRNA_A-nodosum_M_contig905.12.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=700bp
MLPLLDWKDWSTDRLHWTYPAVVRAFPTCLFDPVGASPESRGQRSERRAH
QTQRSRGADANGAKRGRETRDIDDVVWAQSSRLPCPFEPYSLGEVFVRST
TDEDLAVVGVGGGPWRRRWLVLLQTYLFELLQPPPQVCRRFLSPSPLPPP
SRSRLAATSTSMGGRGGDGGVEGAGGGTLFKGASAAKVHVKRSLKEQEKQ
ARAEGTEKIEEEEAERLVAPAGFLCLSRASVKDGGRDWGPRTLLLRCLTR
PPEISREEASSRGAGGNTNISSASFCGGNGEEEICVELRVPSEDVGTQWT
ELFRSRAVLEMSTIFEPTEPDFETRHPENEDIEEGEDLRKGSGSGGGLEA
KAPLETDASFSVVGTGRFSKVVWAKRRRPWGTGVVRKEGGDRLSTVKKIV
DKQAFWARVRSGKERADALAREVFCQTVLTRHNTDVDDSFDAISKREGVT
SEARHGGSYNQPRFGCDCGGGIVRLHSVLETATELVLEMDLMSRIDLFHR
LEQRGKFSEPEAASIIHNTLVTIDKCQARGFCHRDVKPSNLLYPTPTSMH
GPECVALTNFGMATMVGQDGLVRGRCGTSGYVAPEILKAQKHEGYSGNVD
VFSAGVVLYACLCGYEPFYGVDDHQLLAANKAAVVKFHELEWEHVSQGAR
DLVSKMLESDPSKRISSREALRHPWVASNRRRAHAKEDGGIDKGRVSSS*
back to top

mRNA from alignment at A-nodosum_M_contig905:211807..218261-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig905.12.2 ID=mRNA_A-nodosum_M_contig905.12.2|Name=mRNA_A-nodosum_M_contig905.12.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6455bp|location=Sequence derived from alignment at A-nodosum_M_contig905:211807..218261- (Ascophyllum nodosum dioecious)
GTAATGCTACCACTACTTGACTGGAAAGACTGGAGCACGGACCGCCTGCA CTGGACGTACCCAGCCGTCGTCCGTGCCTTCCCAACGTGCTTGTTTGACC CGGTGGGAGCATCGCCCGAAAGCCGAGGGCAGCGGAGCGAGCGGCGCGCT CATCAAACCCAGCGCTCCCGCGGAGCCGACGCAAACGGGGCCAAGAGGGG GCGGGAAACGAGGGATATTGATGACGTCGTTTGGGCTCAGTCGTCAAGGT TACCCTGCCCGTTCGAGCCTTACTCGCTGGGCGAGGTGTTTGTGAGGTCC ACGACCGATGAGGACCTGGCTGTAGTCGGCGTAGGTGGCGGTCCGTGGCG GCGGAGGTGGCTGGTTCTATTGCAGACTTACCTCTTCGAGTTGCTGCAGC CGCCACCGCAAGTATGCCGACGATTCTTGTCCCCGTCCCCGTTACCGCCA CCTTCCCGGTCCAGACTGGCGGCGACTTCCACGTCGATGGGAGGTCGAGG CGGTGACGGTGGCGTTGAGGGGGCGGGGGGAGGTACGTTGTTTAAAGGTG CTAGTGCGGCGAAGGTGCATGTGAAGAGGTCGCTAAAGGAGCAGGAGAAG CAAGCACGAGCGGAGGGCACAGAGAAGATAGAGGAGGAGGAAGCCGAGAG GCTTGTTGCCCCCGCGGGATTCCTTTGTCTCAGCAGGGCTTCCGTGAAGG ACGGGGGGCGAGATTGGGGGCCGAGAACGCTATTGCTCAGGTGTTTGACG CGCCCCCCCGAGATTTCACGGGAAGAGGCCAGCAGTAGAGGCGCTGGCGG CAATACAAACATTTCCAGCGCCAGTTTTTGCGGAGGCAATGGAGAAGAGG AGATTTGTGTGGAGTTGCGGGTGCCCAGCGAAGATGTCGGCACCCAATGG ACCGAGCTCTTCCGCAGTCGCGCCGTGCTCGAGGTGAAGCATGAAGGAAA AACTCCGCTGTGCACACCGCAGCCGCAGATCTTTGCTAGTGTTGAGAGGT GTTGCATGTCGCGTCCCTTTCCCTCGCTTGGCGCCGATGGCTGATATACA CCACTTCATTTTCGCAAAAATAAGCTATTCCCGCCACTAAAGAGTTTTGG CTATACCCACCCCCTTCTCTTCTTTTGTACATGCCTTTGATTGAGCAGAT GTCGACTATCTTCGAGCCCACCGAACCCGACTTTGAGACGCGGCACCCGG AGAACGAAGATATCGAGGAAGGAGAAGATCTTAGAAAAGGCAGTGGCAGT GGTGGGGGCCTTGAGGCAAAGGCACCTCTGGAGACCGACGCGAGTTTCTC CGTTGTAGGGACGGGTAGATTCTCGAAGGTCGTTTGGGCGAAGAGACGAC GCCCTTGGGGGACTGGGGTCGTCAGGAAAGAGGGCGGCGACCGCCTCTCC ACTGTGAAGGTGCGGCAGCAATGAGGAGAGGCAGTCAATCTAGACGTTTT TGTTTCGCTCGCTGTTCCAGCTCATCGTTCTTCTCTTTCCATTCTTCCTG GTGTTGCTCTGGAGCAGCTTCCGCCCTTGATCTCGGAATCTTCTTGGAGC TGTCGTTGATGTTGCCACTCGCATTATCCGCGAATAATGGCGGGGTTAGG TAGGCACGTCATGTGGGTATCAACAGGAAAATATCTCCCCCCCCCCTTCC TCCTTGGCATGTCTCTTTGTACGACCTTGAAACCAAGAAGATAGTGGACA AGCAGGCGTTTTGGGCGCGAGTTCGAAGCGGAAAAGAAAGAGCCGACGCG CTCGCCCGTGAGGTATTTTGCCAAACAGTGCTCACGCGGCATAATACAGA CGTTGACGATAGCTTCGACGCCATCTCCAAACGTGAAGGAGTAACGTCTG AGGCACGGCATGGCGGCAGTTATAATCAGCCCCGATTTGGCTGCGATTGT GGCGGTGGGATTGTGCGTCTCCATAGCGTCTTGGAGACGGCTACTGAGTT GGTGAGGAGCAAGCAAGTGCGCCCTAGTGGAAGATGAGATCGTTAAGTAC GAAAAAATTGTACGTCGACCAGTTCCGCGGTTGTTCATGTCACGTTCTGT CGCATTCTTGCGTATGGTCGCGCCGTTTTTGCTTCTTCATAGGGGACGTG CCCTCTAGCAAACATTCGCGCATGGAAATGGCGCGTTTAATTCCGTCGTT ATTTTATTTTTTATTTTATTTTATTTTCTCTTTTTGTCTTGACACTTCCA AAAGCTTCTAAGAAATTGGAGATATTGATCAATCGTCTCTGGCGTGCTTC TGTGTGTGCGTCTCTAAGCACACGGTATGAATCAGTCGCCTCTGGCGTGC TTCTGTACATCATGTGTAATGCGTCACTCAGCACACCAACGAAAGGGCTT GGGGGGGGATGTTGCAAAACTGTCCTTGATGTCAATGGGAAGGATACCAC AACGCCCCTTTTCATAATCTCCAAGAAGCGGAACCAACTCTACGTGAGAG ACAAGTTAGCATACCATGCAAGGGGGCAGTTAAAATAATCCCCGAGAGGG GGTGGTTCGACACTCCCCTCGGGAATAACATTACAAAATCCTTTCCACCA CCACGTTTGCTGGGAGACTCTTTTTCTATTTATTTTTTTACATGCGTTGC ACGCGTTAGGTTCTCGAGATGGACCTCATGTCGAGGATCGACCTCTTTCA CCGCCTGGAGCAGCGCGGTAAATTCTCTGAGCCGGAAGCTGCCAGCATCA TACACAACACGCTCGTCACGGTGAGATTCAGAGCAATTATGCACCCGGTC CGAAGGGCGCATAGAGGTAGGAGGGCGGGGGGGCGGAGAATAGAGGAGAA CACTAAGGAGGTGTCATGTACCAGGTAACACTCCGTGGAGCTTGCCAATC CTCTAGTGCTTGTTGGTGTTACCGCTGCGAGGGTTCCACGTTCGCCGGCG GGTGCTTGATTATTTCTTTCTGATCGCAGCGTCACCCAGAATTTTGGTGA CGGCCTCTTTTCGGGGCCAACGAGCTACGCCCAGTCAAGCTTTTTTCTGG TCGAACATGTAAAGTGCCGTGTTTTTAGGAGGAGGCTAAAATTAAGTTGC TGCCGTAGGGGACGAGGCTCTCGCCACCTGGTTTGATGGCTCGCGCGCAG TCATCGTCCTTCGTTGCTGGTACCAATCGCACCCCTCCTACGATATATCG CCAGCAGTTGAAGCTACGCCTAAGAAACCCTGTCCACGTAAGTGACGCCA CAGCACCGTCACGTTAAGCAGTAACGCTTTGCACGCTGATGTCCATAGAT CACGGCCTATCTCTCCTCCCCTCCGTTCTCTTGCGCACTTGCGTGTAAAA CCGTCGGTAATTTTGTTAGATCGACAAGTGTCAAGCGCGTGGTTTTTGTC ACCGAGACGTGAAGCCGTCGAACCTCCTCTACCCCACCCCGACTTCTATG CACGGCCCGGAGTGCGTAGCCCTGACTAACTTCGGCATGGCGACCATGGT TGGTCAAGATGGTCTGGTGCGGGGCAGGTGCATTATTCGGCAGCATTTGG CCATACTCTGCTAGGACGGGTTCCTCCTCTGTTCGTGTTTTGTAGACACA GCCTCGAAACAAAGCGTGGGCGTACTACAGCATAGTACAGCGTAGTCCAA GTCCGGCGTGGCGTACGATGATAACCGCGTTTATATTTCTTGTCTACTAC GTCGCCGTGTTTGTACAATACGAGTGAGAGGGGAGGAGCGGAGAGGACGG CCGTCTGCACTTCAAATCTGACATAACACTCAACCTCCTGGCTTGCCTTG ATGGGGGTGGTGACCTCGGAGGCGACCGTCTAGTGTTTTCGGCTTCAACT CATCCCGGATTTTCTACTTCTCTCAACGTCGATTGCGTGAGATCTCAAAC AAATTTATCTCGTGGCATTTGGAGCGAGTACAATATACTAGGTACCCATG GGTGGATATTTGTGCGCCGATTCGCATACCTTCCTCGGAAATAGAGGTTT TTATCGTTCATGCGTCATGTTGTGCAGGGCCAATATGCGTCCTCGATAGG GACCACGAAGCAGGCAGCGTCATCTCGTGTGCGCCTGAGGAACGTTAATG ACACGATTGATTGCGATGAGAACCCCGCACATCGGTGGACCTTGATAATA TATACTGTATTATATAATATATACTAGTAAGTAGTAGCCATTCCAGGCCG GAACACGGCGTACAGACACCATGGTCGCGTTCCCTGCTGAGCTAATTCGT GGCTGTACATCAGGCGACGAAGGAAATATTAATAGCGAAATACGTTTATA CTTACTGGACTGACTGGTGGAAAAGTTTTATCCGGCTCTTAACCTATTAC CGTCTTTCGCTCCTTGGTAGATGCGGCACCTCAGGCTACGTGGCCCCAGA AATCCTGAAGGCCCAGAAACACGAGGGGTACAGCGGGAACGTGGACGTTT TTTCGGTGAGGGAGGGGAAGGGAAAGGGAGAAGGGAGAAGGGAGAAGGGA GAAACATGTGCGCGCGGGGGGGGGGGGGGGGGAACACGAGAATACTCGTT TGCTCGAGACAGTTTTTTTTGTAAACAAAAATAATGTGTGTCATCGTGGA TAGAAAATACAACAAACAGAGTACTATGCCGCAGTCCGTTCCTTGGGTAC GGAACACGATTGGTGATAACACCTGGAACATATGCTGTCTCCAAGATTAC ACCTGCCTATGCGGTGTCCCCGCACTCCCGCAAACCAAGGGCCGATATGT TGTGCACCTGGCCCATCGCGCCCGCATGCGGGACGTCGATATCCCGGGAT AAGATCCCTCCGACTTATAGCAAGGCTTGATGCTATGTAATATACTGAGT TTTGTATATAGATCGGTCGATAACCCCACCCCCAACAGATATTTTGAAAG AAAATAGTACGGGTAGATACAGTAAATAAACCATTGAGTGTATTTTTCGT TATGTTGTGTCACGAGCGAACATAGAGGAGAGACAAGTAGTGACGACGAA AACACCAAATGTTGTGGATATGTCACGCCACGAGACAATTCACGGTTAAA AACGCTCTCGCCCACACTTCACAGGACCAGACTCACAATAAATAGTACTT GTACCTCTGCTGTTCAATGAGAGATACAGAATTAACAGCCGGCACGATGT TTTGCATACTACGTAGAAGATAAACAAACGACGCCCCATATCGCGAATGG CAACAGCGCACGCGCGGCGGGAAGCGCCCGCCTTCGTACTCTCAAAAGTA GATATTAATACAAATTCCTCGCTTTGCAGGCGGGCGTGGTGCTGTACGCG TGTCTGTGCGGGTACGAGCCGTTCTATGGCGTGGACGACCACCAGCTCCT TGCCGCGAACAAGGCCGCCGTTGTGAAGTTTCACGAGCTCGAGTGGGAGC ACGTGTCGCAGGGAGCGAGAGATCTCGTAAGTATCAATGTCGTCAGTGGC AATGGTACCAGAGTGGCGACGTGTTTCGTTGTAGAGACAGAGGCCAACCA CACCCCCCCCAGGCAGCCAAACACGTGGATAGCGCGAGTACGCGAATCTC TTACGGCGGCTAAGAGGAGAGTCGCGGCGCGCTTGCCCGTGTTTAATCTT GTATCACAGCAACTGCTTATCCTGAAGCGCGGTAAAGTTCAGAGAGACTA GCTGAGAAAGTTCGGGGGTTACTCGCGGAGGTTCGAATGTGTCACCCACC GGTCAACTTGTTGCCATGGAGCTATTGAACGCTCCCCTTGAATCTCGAGC GGGACATACCGGTATTGGCCCTGGCCGACCTCGCTCGGCCCTGCATACCC TCTGACTCCTCTTTTCCCTCTCTCTGTCACCGCATACACACGACATGCCC TCGTACCCCCCCCCCCCACACACACATAACACCTTCTTTGAAGGTATCGA AGATGCTGGAGTCAGACCCGTCCAAGCGTATATCTTCGCGGGAAGCCCTA CGCCACCCGTGGGTTGCTAGTAATCGAAGACGAGCCCACGCTAAGGAGGA TGGGGGCATAGACAAAGGCAGAGTTTCAAGCAGCTAGGATATCTTCAGCA AACATCGGCACGGACTGCAAAACCGCTCGCCGTCCCTACCCCTAGACGGG ATGTCGATGGCGTGGGCAGGCACGCAAGGGCAGCTTCTACCATAATTTCA AGGTGTCGTCGTTGTTGCGTCGTTAGGTGTTAGTGCAAAGCCAAGAAATT TTCCGCCCAGAGGGAGAACAGAAGGCAACCCGGCCGTTCGGGAGTCGGTT AGACAAACTTAACCTAGGGTATCGGATGGAATATTATCGCCGACAGCAAC CCGAACCACCATCTACAGTAGTAGTACGCGGTACAAAGTTGGTTGCTTGC GAAGTAGAGGTATGGGGATCCTCGTCGTATAATAAGCCCTGGGATCCGGG GAAGATCAAATAATTACATTCAATTTGGGCTAATAATGCGTCAATAAAAT GCACCATGGTATTGGTACGGATACGGATATACGGGGGGGATAAAGGAGAG AGGGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig905:211807..218261-

>mRNA_A-nodosum_M_contig905.12.2 ID=mRNA_A-nodosum_M_contig905.12.2|Name=mRNA_A-nodosum_M_contig905.12.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=2100bp|location=Sequence derived from alignment at A-nodosum_M_contig905:211807..218261- (Ascophyllum nodosum dioecious)
ATGCTACCACTACTTGACTGGAAAGACTGGAGCACGGACCGCCTGCACTG
GACGTACCCAGCCGTCGTCCGTGCCTTCCCAACGTGCTTGTTTGACCCGG
TGGGAGCATCGCCCGAAAGCCGAGGGCAGCGGAGCGAGCGGCGCGCTCAT
CAAACCCAGCGCTCCCGCGGAGCCGACGCAAACGGGGCCAAGAGGGGGCG
GGAAACGAGGGATATTGATGACGTCGTTTGGGCTCAGTCGTCAAGGTTAC
CCTGCCCGTTCGAGCCTTACTCGCTGGGCGAGGTGTTTGTGAGGTCCACG
ACCGATGAGGACCTGGCTGTAGTCGGCGTAGGTGGCGGTCCGTGGCGGCG
GAGGTGGCTGGTTCTATTGCAGACTTACCTCTTCGAGTTGCTGCAGCCGC
CACCGCAAGTATGCCGACGATTCTTGTCCCCGTCCCCGTTACCGCCACCT
TCCCGGTCCAGACTGGCGGCGACTTCCACGTCGATGGGAGGTCGAGGCGG
TGACGGTGGCGTTGAGGGGGCGGGGGGAGGTACGTTGTTTAAAGGTGCTA
GTGCGGCGAAGGTGCATGTGAAGAGGTCGCTAAAGGAGCAGGAGAAGCAA
GCACGAGCGGAGGGCACAGAGAAGATAGAGGAGGAGGAAGCCGAGAGGCT
TGTTGCCCCCGCGGGATTCCTTTGTCTCAGCAGGGCTTCCGTGAAGGACG
GGGGGCGAGATTGGGGGCCGAGAACGCTATTGCTCAGGTGTTTGACGCGC
CCCCCCGAGATTTCACGGGAAGAGGCCAGCAGTAGAGGCGCTGGCGGCAA
TACAAACATTTCCAGCGCCAGTTTTTGCGGAGGCAATGGAGAAGAGGAGA
TTTGTGTGGAGTTGCGGGTGCCCAGCGAAGATGTCGGCACCCAATGGACC
GAGCTCTTCCGCAGTCGCGCCGTGCTCGAGATGTCGACTATCTTCGAGCC
CACCGAACCCGACTTTGAGACGCGGCACCCGGAGAACGAAGATATCGAGG
AAGGAGAAGATCTTAGAAAAGGCAGTGGCAGTGGTGGGGGCCTTGAGGCA
AAGGCACCTCTGGAGACCGACGCGAGTTTCTCCGTTGTAGGGACGGGTAG
ATTCTCGAAGGTCGTTTGGGCGAAGAGACGACGCCCTTGGGGGACTGGGG
TCGTCAGGAAAGAGGGCGGCGACCGCCTCTCCACTGTGAAGAAGATAGTG
GACAAGCAGGCGTTTTGGGCGCGAGTTCGAAGCGGAAAAGAAAGAGCCGA
CGCGCTCGCCCGTGAGGTATTTTGCCAAACAGTGCTCACGCGGCATAATA
CAGACGTTGACGATAGCTTCGACGCCATCTCCAAACGTGAAGGAGTAACG
TCTGAGGCACGGCATGGCGGCAGTTATAATCAGCCCCGATTTGGCTGCGA
TTGTGGCGGTGGGATTGTGCGTCTCCATAGCGTCTTGGAGACGGCTACTG
AGTTGGTTCTCGAGATGGACCTCATGTCGAGGATCGACCTCTTTCACCGC
CTGGAGCAGCGCGGTAAATTCTCTGAGCCGGAAGCTGCCAGCATCATACA
CAACACGCTCGTCACGATCGACAAGTGTCAAGCGCGTGGTTTTTGTCACC
GAGACGTGAAGCCGTCGAACCTCCTCTACCCCACCCCGACTTCTATGCAC
GGCCCGGAGTGCGTAGCCCTGACTAACTTCGGCATGGCGACCATGGTTGG
TCAAGATGGTCTGGTGCGGGGCAGATGCGGCACCTCAGGCTACGTGGCCC
CAGAAATCCTGAAGGCCCAGAAACACGAGGGGTACAGCGGGAACGTGGAC
GTTTTTTCGGCGGGCGTGGTGCTGTACGCGTGTCTGTGCGGGTACGAGCC
GTTCTATGGCGTGGACGACCACCAGCTCCTTGCCGCGAACAAGGCCGCCG
TTGTGAAGTTTCACGAGCTCGAGTGGGAGCACGTGTCGCAGGGAGCGAGA
GATCTCGTATCGAAGATGCTGGAGTCAGACCCGTCCAAGCGTATATCTTC
GCGGGAAGCCCTACGCCACCCGTGGGTTGCTAGTAATCGAAGACGAGCCC
ACGCTAAGGAGGATGGGGGCATAGACAAAGGCAGAGTTTCAAGCAGCTAG
back to top