mRNA_A-nodosum_M_contig9044.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig9044.1.1 vs. uniprot
Match: D8LSX2_ECTSI (Similar to intersectin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX2_ECTSI) HSP 1 Score: 216 bits (550), Expect = 1.300e-63 Identity = 119/224 (53.12%), Postives = 144/224 (64.29%), Query Frame = 3
Query: 366 GLGPADIANRKVMLQAWLQTLCTAASRNNPALRIPIYDFLETALYYPPDPNATSGTAGAATSMPCXXXXXXXXXXXXXXXXATPYTETVAEASVVDRP--PPTVPQTAKFDPVTSDGWAIPADLREASDKKFAKTGPDASGRLKARKAAEVLRSDTGASSDDLRAIWELSDIDKNGMLDHDEFTLAWYLATEAAAGRKPPASLPADLVPPSKRAPAARSAANPF 1031
GLGPAD+ R+ MLQAWLQ+LCTAAS N PALR+P+YDFLETA+YYPP+ TS AA++ A Y E + A+ P P K D T GWA+P + R+ASD K A GP A+G+L +AA LR+ TGA +DLRA+W LSDID++GMLD DEF +AWYLA +AAAG KPPASLPAD+VPPSKR A S ANPF
Sbjct: 174 GLGPADLEERRQMLQAWLQSLCTAASANTPALRVPLYDFLETAMYYPPEAPVTSSDPTAASAQHTAVATPAATTATTGVPVAAAYAEALPPAAGTKGVGVPSAGPLPPKPDS-TGYGWAVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWALSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPF 396
BLAST of mRNA_A-nodosum_M_contig9044.1.1 vs. uniprot
Match: A0A6H5JHJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ6_9PHAE) HSP 1 Score: 204 bits (518), Expect = 3.530e-61 Identity = 112/217 (51.61%), Postives = 136/217 (62.67%), Query Frame = 3
Query: 402 MLQAWLQTLCTAASRNNPALRIPIYDFLETALYYPPDPNATSGTAGAATSMPCXXXXXXXXXXXXXXXXATPYTETVAEASVVDR-------PPPTVPQTAKFDPVTSDGWAIPADLREASDKKFAKTGPDASGRLKARKAAEVLRSDTGASSDDLRAIWELSDIDKNGMLDHDEFTLAWYLATEAAAGRKPPASLPADLVPPSKRAPAARSAANPF 1031
MLQAWLQ+LCTAAS N PALR+P+YDFLETA YYPP+ TS A++ A Y E + A+ PPP P +A+ DGWA+P + R+ASD K A GP A+G+L +AA LR+ TGA +DLRA+W LSDID++GMLD DEF +AWYLA +AAAG KPPASLPAD+VPPSKR A S ANPF
Sbjct: 1 MLQAWLQSLCTAASTNTPALRVPLYDFLETASYYPPEAPVTSSDPTTASAQHTAVATPAATTATTGVPVAAAYAEALPPAAGTKGVGVSSAGPPPPKPDSAE------DGWAVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWALSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPF 211
BLAST of mRNA_A-nodosum_M_contig9044.1.1 vs. uniprot
Match: A0A6H5JJX9_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJX9_9PHAE) HSP 1 Score: 108 bits (269), Expect = 2.130e-25 Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 1
Query: 67 RRYPPPRAGYIYVRRSAGES-----PRAVRAEETSFMIKRVQITAHRQGSEGEIFYDVQVTMNDDYKYVVLRRYSQFDRLRERVAGTVRVVSSPFP 339
+RYPPP AGYIYV + PRAVRA ET F+I RV + ++R G GE+ ++VQVTMND YKY VLRRYSQFD+LRERV+ +R + PFP
Sbjct: 2 QRYPPPPAGYIYVVQEPQPGQVHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQVTMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFP 97
BLAST of mRNA_A-nodosum_M_contig9044.1.1 vs. uniprot
Match: A0A6B2L2G6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L2G6_9EUKA) HSP 1 Score: 85.5 bits (210), Expect = 1.080e-14 Identity = 54/133 (40.60%), Postives = 71/133 (53.38%), Query Frame = 3
Query: 621 TETVAEASVVDRP-------PPTVPQTAKFDPVTSDGWAIPADLREASDKKFAKTGPDASGRLKARKAAEVLRSDTGASSDDLRAIWELSDIDKNGMLDHDEFTLAWYLATEAAAGRKPPASLPADLVPPSKR 998
T+T+ + +D P PP +P GW + AD + A D+ F GP +G++ A E L + TG + LR IWELSD +K+G LD +EF LA +L E GRK P LPA LVPPSKR
Sbjct: 356 TKTIEQVLQIDLPQLMKLVQPPKSEDPKSTNPFADSGWDVKADAKAAYDQIFHSLGPK-NGKISGNVARETLVN-TGIETTLLRKIWELSDFEKDGQLDAEEFALALHLTEEVKMGRKVPDVLPASLVPPSKR 486
BLAST of mRNA_A-nodosum_M_contig9044.1.1 vs. uniprot
Match: A0A7S2F4E5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F4E5_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 3.130e-11 Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query: 699 TSDGWAIPADLREASDKKFAKTGPDASGRLKARKAAEVLRSDTGASSDDLRAIWELSDIDKNGMLDHDEFTLAWYLATEAAAGRKPPASLPADLVPPSKR 998
+++ WA+ A + ++ F GP +G+L + E L + TG + LR IWELSDIDK+G LD DEF +A YL +A G+ P +LP+ +VPPSK+
Sbjct: 128 STEEWAV-APYQAEFNQVFYSKGPS-NGKLSPAQVREALMA-TGVAQGVLRCIWELSDIDKDGQLDMDEFAVAMYLCRQAQRGQPMPQALPSQVVPPSKK 224
BLAST of mRNA_A-nodosum_M_contig9044.1.1 vs. uniprot
Match: A0A835YYV9_9STRA (RME1, RME-1/EHD family ATPase with a C-terminal EH domain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYV9_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 6.440e-11 Identity = 46/96 (47.92%), Postives = 58/96 (60.42%), Query Frame = 3
Query: 711 WAIPADLREASDKKFAKTGPDASGRLKARKAAEVLRSDTGASSDDLRAIWELSDIDKNGMLDHDEFTLAWYLATEAAAGRKPPASLPADLVPPSKR 998
WA+ + DK F GP G L A AA +TG S+D LR IW+LSD+DK+G LD E+T+A +L A AG PA+LPA+LVPP KR
Sbjct: 501 WALEEEAHYNIDK-FNSLGPQ--GGLLAATAARGPLMETGLSTDMLRVIWDLSDMDKDGALDLAEYTVAMHLCAAAKAGDPVPAALPAELVPPDKR 593
BLAST of mRNA_A-nodosum_M_contig9044.1.1 vs. uniprot
Match: UPI001884DCC1 (epidermal growth factor receptor substrate 15-like 1 n=2 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884DCC1) HSP 1 Score: 73.9 bits (180), Expect = 9.840e-11 Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 3
Query: 657 PPPTV---PQTAKFDPVTSDG---WAIPADLREASDKKFAKTGPDASGRLKARKAAEVLRSDTGASSDDLRAIWELSDIDKNGMLDHDEFTLAWYLATEAAAGRKPPASLPADLVPPSKR 998
PPP + P F P S+G W + + ++ D+ F GP + RL K EVL + + D L IW+LSDIDK+G LD DEFT+A +L +A A PA+LPA+L+P +KR
Sbjct: 94 PPPNMGEPPPAGSFSPAISNGSTVWTVKPEDKQRYDQIFNSLGP-INERLPGNKVREVLLN-SKLPMDTLGRIWDLSDIDKDGFLDRDEFTIAMHLVYKALAKCAVPAALPAELLPAAKR 211
BLAST of mRNA_A-nodosum_M_contig9044.1.1 vs. uniprot
Match: A0A7S0HCE4_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HCE4_9EUKA) HSP 1 Score: 68.6 bits (166), Expect = 2.300e-10 Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 3
Query: 711 WAI-PADLREASDKKFAKTGPDASGRLKARKAAEVLRSDTGASSDDLRAIWELSDIDKNGMLDHDEFTLAWYLATEAAAGRKPPASLPADLVPPSKR 998
WA+ PAD + ++ FA P +G + +L +G D LR +W LSDID++G LD DEF +A +L E G+ PA+LP DL+PPSKR
Sbjct: 60 WAVTPAD-KARYEEIFASLAPQ-NGLVSGMGVRPILER-SGLPVDTLRQVWNLSDIDRDGQLDSDEFAVAMHLTRECTTGKAMPATLPPDLIPPSKR 153
BLAST of mRNA_A-nodosum_M_contig9044.1.1 vs. uniprot
Match: B7GAU1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAU1_PHATC) HSP 1 Score: 72.4 bits (176), Expect = 2.650e-10 Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = 3
Query: 687 FDPVTSDGWAIPADLREASDK---KFAKTGPDASGRLKARKAAEVLRSDTGASSDDLRAIWELSDIDKNGMLDHDEFTLAWYLATEAAA-GRKPPASLPADLVPPSKR 998
+D D WA L++++D+ F GPD G L KA +VL TG D LR IW LSDIDK+G+ DHDE+ +A +L GR P+ LPA ++PP KR
Sbjct: 448 YDEENEDYWA----LQDSADRLLPSFEALGPDG-GYLSTAKARDVLVK-TGLEKDQLRQIWNLSDIDKDGLFDHDEYVVAMFLCDAVLQKGRPIPSELPASVIPPRKR 549
BLAST of mRNA_A-nodosum_M_contig9044.1.1 vs. uniprot
Match: A0A7S3URG0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URG0_HETAK) HSP 1 Score: 67.4 bits (163), Expect = 3.050e-10 Identity = 52/122 (42.62%), Postives = 69/122 (56.56%), Query Frame = 3
Query: 681 AKFDPVTSDGWAIPADLREASDKKFAKTGPDASGRLKARKAAEVLRSDTGASSDDLRAIWELSDIDKNGMLDHDEFTLAWYLATEAAA-GRKPPA--SLPADLVPPSKRA-PAARSAAN-PF 1031
A + + W + A + D F +GRL E+L + TGA + L +WELSD+D++G LD +EF +A YLA E AA G PA SLPA LVPPS+R PAA ++AN PF
Sbjct: 6 ASSEAAAAAAWEV-APFKARYDAIFDSKDVAKTGRLDPHAVRELLLA-TGADAQALAQVWELSDLDRDGALDREEFAVAHYLAAEVAAKGGALPAGPSLPAALVPPSRRGRPAASASANNPF 125 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9044.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig9044.1.1 >prot_A-nodosum_M_contig9044.1.1 ID=prot_A-nodosum_M_contig9044.1.1|Name=mRNA_A-nodosum_M_contig9044.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=211bp MLQAWLQTLCTAASRNNPALRIPIYDFLETALYYPPDPNATSGTAGAATSback to top mRNA from alignment at A-nodosum_M_contig9044:4710..7935+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig9044.1.1 ID=mRNA_A-nodosum_M_contig9044.1.1|Name=mRNA_A-nodosum_M_contig9044.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3226bp|location=Sequence derived from alignment at A-nodosum_M_contig9044:4710..7935+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig9044:4710..7935+ >mRNA_A-nodosum_M_contig9044.1.1 ID=mRNA_A-nodosum_M_contig9044.1.1|Name=mRNA_A-nodosum_M_contig9044.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=633bp|location=Sequence derived from alignment at A-nodosum_M_contig9044:4710..7935+ (Ascophyllum nodosum dioecious)back to top |