mRNA_A-nodosum_M_contig904.9.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig904.9.1 vs. uniprot
Match: D8LEG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG7_ECTSI) HSP 1 Score: 210 bits (534), Expect = 9.490e-53 Identity = 244/781 (31.24%), Postives = 336/781 (43.02%), Query Frame = 1
Query: 697 HRANSLRSLGDLTLDWRRDPFSTPARRRRLINDVCKLVVSSYAEAAASRVAEFRREEAFVACIQAAVRMRSAWNRFKVEVAERRRRAALTLQLGWLAYTARRRTQILREKKDIARLEEEIARKKRLMRERDHEKVAISREKMEQKKRQSGQASVVL----LQRRFRA--------IQAREELAENKRTQDQQRAVRVSKAAATIHATF------------------RRWGRKQEASARILRDKMIKAAYLIQRAWSQYEEESLMKRPKPQR---------------SEHSDASGSKSFFINNV------ETDSHVSTPHDTRATAGDTCEPLTSEETCPPKSPTFTDLQASGTDARGSDDNC----LRPRNAAGL--NPASTR-----VAHAPPTGMMAVRVKIGSERRNWFTPVV-----SREID-QTAPLVPVGTGSAS-------------DADKNNNGRQRDGVMLSKTATTTGAEEVRVLGVQPSAEQGAKTARLKI--ETIFLASHTEASQ-TWPQDRVGDGSRCEMSRSSFLEVIPSNPSAAVRQTTETTKECLV-------GTLGGLGRET--STSRTREKPQVPARNAVAMNNTQEQCCIMEGSQVYRYLGCARCGLKYLVESVDARLPESGSEQPAPEVLYLCTTCGDILRGE-EDGRWQRRRRPSSAPAVGRR--SAPHDGDSSSKRTAKRCQILPDGSSVDH----VLEEGRSEITVAQESYEVGRSQRRS---TKIKLQYARCARTIQHAYKDFRHQQYLRDWALRVV 2730
HRANS RSL D+T DWR DPFSTPARRRRLINDVCK++V +Y A+ RV RREE + IQAA RM A F ++ RR AAL LQLGWL+ ARRR ++LRE +D R E LQRRFRA QAR L + +R +D+Q + AT +R R + A R+ A+ +Q+AW +Y+ + + R + + +EH S + +N + D ++S + +GD E + + + L A G DN +RP + G +PA R V V+ GSE + TP+V E+D +T VGT A+ +D++ R R + K A+ G P A A AR + T AS T AS+ T P + + + + + + I S + + T +V GT G + S +P A V + T++ ME +QVY LGC CG+KYLVE+VD + +S QP PEVLYLCTTCG LR E+GRW+RRRRPSSAPA GRR SA G A P G+ + L E S + Q++ G +R+ + +L+YA CA+ IQHAY++FRH+QYLRDWA +V
Sbjct: 19 HRANSQRSLQDMTRDWRNDPFSTPARRRRLINDVCKVIVRTYTHASVLRVVGLRREERYATRIQAAFRMSWARRLFCAKLEARRVNAALVLQLGWLSCAARRRVRVLREARDHDRRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRFRARQELLVALTQARRRLTQAQRLRDEQHREATAMMQATXXXXXXXXXXXXXXXXXXXXXXXQRRARDKAAVERL-------ASARLQQAWRRYKAANELNRRRRRELETSGLRSSTTDEDATEHRTEGASSTSLCSNEGHPDPKDEDPNISKKSVRQEMSGDVNEGASGWDNWSSAFGVNSSLAAEIA-REGETDNAAAENVRPWTSTGAAESPAPPRSRXXXXXXXXXXXXXXVTVRRGSEETSLVTPIVLTESGGEEMDAETTRKSEVGTALATADVTVVTAFSSTLGSDESGGTRPRAATVADKAVRVAEAK-----GAAPPAHADAPKARREQPERTKLSASATAASEITKPANPAPNQDADDAAVAGKISQILSTTAPQIANEEATAVPAMVPVAPVMKGTAASEGDPPMMTVSTPMTEPAEEAARDVVVKPTEQ--LFMEDTQVY--LGCGMCGVKYLVEAVDPGVSKSTQGQPTPEVLYLCTTCGATLRNNGENGRWKRRRRPSSAPAAGRRRGSAFSVGGRDGGARANNEYGPPPGNGWNGDRAAALVESPSVVESLQQALHTGGGRRQGENDSATRLRYAHCAKAIQHAYQNFRHRQYLRDWAFSLV 782
BLAST of mRNA_A-nodosum_M_contig904.9.1 vs. uniprot
Match: A0A6H5JBQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ7_9PHAE) HSP 1 Score: 147 bits (370), Expect = 2.130e-32 Identity = 220/769 (28.61%), Postives = 290/769 (37.71%), Query Frame = 1
Query: 730 LTLDWRRDPFSTPARRRRLINDVCKLVVSSYAEAAASRVAEFRREEAFVACIQAAVRMRSAWNRFKVEVAERRRRAALTLQLGWLAYTARRRTQILREKKDIARLEEEIARKKR----LMRERDHEKVAISREKMEQKKRQSGQASVVLLQRRFRAIQAREELAENKRTQDQQRAVRVSKAAATIHATFRRWGRKQEASARILRDKMIKAAYLIQRAWSQYEEESLMKRPKPQRSEHSDASGSKSFFINNVETDSHVSTPHDTRA----TAGDTCEPLTSEETCPPKSPTFTDLQ---------------ASGTD-----------------ARGSDDNC---LRPRNAAGL--NPASTRVAH-----APPTGMMAVRVKIGSERRNWFTPVVSREID------QTAPLVPVGTGSAS-------------DADKNNNGRQRDGVMLSKTATTTGAEEVRVLGVQPSAEQGAKTARLKI--ETIFLASHTEASQTW-PQDRVGDGSRCEMSRSSFLEVIPSN--PSAAVRQTTETTKECLVGTL--GGLGRETSTSRTREKPQV-PARNAVAMNNTQEQCCIMEGSQVYRYLGCARCGLKYLVESVDARLPESGSEQPAPEVLYLCTTCGDILRGE-EDGRWQRRRRPS----------SAPAVGRRSA-----------PHDGDSSSKRTAKRCQILPDGSSVDHVLEEGRSEITVAQESYEVGRSQRRS---TKIKLQYARCARTIQHAYKDFRHQQYLRDWALRVV 2730
++ DWR DPFSTPARRRRLINDVCK++V +Y A+ RV RREE + IQAA RM S F ++ E R AA LQLGWL++ A+RR ++LRE +D R EE RK+R S V+LQRRFRA +ET S+ D A T G + L S E P D+ ASG D G DN +RP + G +PA +R H PP GMM V V+ GSE + TP+V E +T +GT SA+ +D++ R R + KT A+ G P A +R K T AS AS+ P + + + + + IPS P A + + V L G E T P PA A + ME +QVY LGC CG+KYLVE+VD + +S QP PEVLYLCTTCG LR EDGRW+R SA +VG R P +G + + TA L E S + Q++ + G +R+ + +L+YA CA+ IQHAY++FRH+QYLRDWA +
Sbjct: 1 MSRDWRNDPFSTPARRRRLINDVCKVIVRTYTHASVLRVVGLRREERYATRIQAAFRMISTRRLFCAKL-EARVSAASVLQLGWLSWAAQRRVRVLRETRDHDRRVEEGRRKRREDXXXXXXXXXXXXXXXXXXXXXXXXXXXLESAVVLQRRFRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXXXRRELETSGLPSSTTDEDAMEHRTEGASSRSLCSNEGHPDPKDEDPDISKKGVRQDMSGDVNKGASGWDNWSSAFGVNSSLAAEIAREGETDNAAENVRPWTSTGAAESPAPSRSRHHHPKDPPPAGMMTVTVRRGSEETSLVTPIVLTESGGEDMDAETTRESEIGTASATAGVSVVTADSSILGSDESGGTRPRAVAVADKTVRVAEAK-----GAAPPAHADTPKSRRKQAERTKTPASAIAASEVAKPANPAPKQDADDAAVAGKISQIPSTTAPQIANEEAKGVSAMVPVALLRKGTAASEGDPPMTVSTPMTEPAEEAARDVVEPTEQLFMEDTQVY--LGCGMCGVKYLVEAVDPGVSKSAQGQPTPEVLYLCTTCGATLRNNGEDGRWKRXXXXXXXXXXXXXXXSAFSVGGRDGGARANNEYGPPPGNGWNGDRATA---------------LVESPSVVESLQQALQTGGGKRQGENDSATRLRYAHCAKAIQHAYQNFRHRQYLRDWAFSLA 742
BLAST of mRNA_A-nodosum_M_contig904.9.1 vs. uniprot
Match: A0A835ZEY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEY7_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 4.530e-12 Identity = 59/141 (41.84%), Postives = 75/141 (53.19%), Query Frame = 1
Query: 616 LYDRDHVLGVKIRDIEFLTTSGKCSNM------HRANSLRSLGDLTLDWRRDPFSTPARRRRLINDVCKLVVSSYAEAAASRVAEFRREEAFVACIQAAVRMRSAWNRFKVEVAERRRRAALTLQLGWLAYTARRRTQILR 1020
LYDR HVL R I F SG + H S +L + DW DP+STPARRRRLI++V +++V SY AAA RVA FR E A IQA R R A + + ER+ +A + +QL W + A R LR
Sbjct: 31 LYDRRHVLAQTARSIVFRRGSGSAAATDATTAAHTRLSHVALEVVAKDWINDPYSTPARRRRLIHEVSRVIVFSYKRAAAERVAAFRVECAAATVIQAHARRRFAAVIYTAALHERQVQACVRVQLWWRRWRAWRVVAALR 171 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig904.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig904.9.1 >prot_A-nodosum_M_contig904.9.1 ID=prot_A-nodosum_M_contig904.9.1|Name=mRNA_A-nodosum_M_contig904.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=910bp WSAVVDIIVPAGGAAGIAFQWSMTPTPGLFVVDVAEGSLAARHGGIVPGMback to top mRNA from alignment at A-nodosum_M_contig904:78216..81924- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig904.9.1 ID=mRNA_A-nodosum_M_contig904.9.1|Name=mRNA_A-nodosum_M_contig904.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3709bp|location=Sequence derived from alignment at A-nodosum_M_contig904:78216..81924- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig904:78216..81924- >mRNA_A-nodosum_M_contig904.9.1 ID=mRNA_A-nodosum_M_contig904.9.1|Name=mRNA_A-nodosum_M_contig904.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2730bp|location=Sequence derived from alignment at A-nodosum_M_contig904:78216..81924- (Ascophyllum nodosum dioecious)back to top |