mRNA_A-nodosum_M_contig904.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig904.25.1
Unique NamemRNA_A-nodosum_M_contig904.25.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig904.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig904contigA-nodosum_M_contig904:141076..142184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size966
Hectar predicted targeting categoryother localisation
Exons2
Cds size648
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870352.8368223-UTR-A-nodosum_M_contig904:141075..1411801680870352.8368223-UTR-A-nodosum_M_contig904:141075..141180Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig904 141076..141180 +
1680870352.8720133-UTR-A-nodosum_M_contig904:141971..1421841680870352.8720133-UTR-A-nodosum_M_contig904:141971..142184Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig904 141972..142184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870352.8481226-CDS-A-nodosum_M_contig904:141180..1412781680870352.8481226-CDS-A-nodosum_M_contig904:141180..141278Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig904 141181..141278 +
1680870352.8594565-CDS-A-nodosum_M_contig904:141421..1419711680870352.8594565-CDS-A-nodosum_M_contig904:141421..141971Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig904 141422..141971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig904.25.1prot_A-nodosum_M_contig904.25.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig904 141181..141971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig904.25.1

>prot_A-nodosum_M_contig904.25.1 ID=prot_A-nodosum_M_contig904.25.1|Name=mRNA_A-nodosum_M_contig904.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=216bp
MWDADVQQMEEGRVPFESIYSKTQSHLESHWNTYNENRDGRETLNSVPDI
LRSLREPRVIEGPAAAAAVAWLPPGPAPAHQPAAAGLPRGPAPAQQAQGV
VYNARQDGSHFIDGGAQDGGGRMKRRRAPQHCFDCGHVKQKGPFSRYHVP
SLPRARQSPSNIADGADGAKCSCPKELRRKALKSHSKVKDKFGGQCNCEG
DERHPGGCKGVRIGS*
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mRNA from alignment at A-nodosum_M_contig904:141076..142184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig904.25.1 ID=mRNA_A-nodosum_M_contig904.25.1|Name=mRNA_A-nodosum_M_contig904.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1109bp|location=Sequence derived from alignment at A-nodosum_M_contig904:141076..142184+ (Ascophyllum nodosum dioecious)
CGGCGCAAAGCATTGAAGTCGCACAGCAAGGTCAAAGACAAGTTTGGCGG
CCAGTGCAACTGTGAGGGGGATGAACGTCACCCGGGGGGGTGCAAGGGTG
TACGCATGTGGGACGCCGACGTGCAGCAGATGGAAGAGGGAAGGGTGCCA
TTCGAATCTATCTACAGTAAGACGCAGTCTCACCTCGAGTCGCACTGGAA
CACGTGAGTAATGTATGGACTTTCATTTGTTTTGCCGCCTTTTGTTGTCC
ATGTTTCTGTGGCGCGTCTGGACGAGGTACGTGTGTTGTCAGCGGACACG
TGATTCGCCTGTACTTCCTTTCGGCGGCGTTTTTTTTTTTTGCAAGGTAC
AACGAGAACCGGGACGGAAGAGAGACGCTGAACAGCGTGCCAGACATACT
TCGCTCGCTCCGCGAGCCTCGTGTCATTGAGGGCCCCGCTGCTGCCGCAG
CGGTGGCGTGGCTGCCTCCGGGGCCCGCCCCAGCCCATCAACCAGCGGCG
GCGGGGCTGCCTAGGGGACCCGCCCCAGCCCAGCAAGCGCAAGGCGTGGT
GTACAATGCTAGACAAGACGGTTCCCACTTCATCGACGGGGGCGCGCAAG
ATGGGGGGGGGAGGATGAAGAGACGGCGTGCCCCCCAGCACTGTTTCGAC
TGCGGTCACGTGAAGCAGAAGGGACCCTTCAGCCGGTACCACGTGCCATC
GTTGCCTAGAGCTCGACAAAGCCCTTCCAATATTGCAGACGGTGCAGATG
GGGCCAAATGCTCTTGCCCCAAGGAACTTCGGCGCAAAGCATTGAAGTCG
CACAGCAAGGTCAAAGACAAGTTTGGCGGCCAGTGCAACTGTGAGGGGGA
TGAACGTCATCCGGGGGGGTGCAAGGGTGTACGCATAGGGTCGTGATGCA
TGTATTGTGTTCAAAAGCTTGAAGGCTCAGAGCTACGTGATGTTTTCTTA
ACTCACGCTTCCTTTCTGTATTTCCCCTCTCTCTCTCTTGTGTCCTTGCC
GCGTCGAAGCTGGGCGTATCAATACTATTAATACTACAAATAGTATGATG
AAGTGGAGGGGCGAGGAAGCATTGTCCGATTCCGAGTCTTCTTCTGGTGT
TTTCTATTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig904:141076..142184+

>mRNA_A-nodosum_M_contig904.25.1 ID=mRNA_A-nodosum_M_contig904.25.1|Name=mRNA_A-nodosum_M_contig904.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at A-nodosum_M_contig904:141076..142184+ (Ascophyllum nodosum dioecious)
ATGTGGGACGCCGACGTGCAGCAGATGGAAGAGGGAAGGGTGCCATTCGA
ATCTATCTACAGTAAGACGCAGTCTCACCTCGAGTCGCACTGGAACACGT
ACAACGAGAACCGGGACGGAAGAGAGACGCTGAACAGCGTGCCAGACATA
CTTCGCTCGCTCCGCGAGCCTCGTGTCATTGAGGGCCCCGCTGCTGCCGC
AGCGGTGGCGTGGCTGCCTCCGGGGCCCGCCCCAGCCCATCAACCAGCGG
CGGCGGGGCTGCCTAGGGGACCCGCCCCAGCCCAGCAAGCGCAAGGCGTG
GTGTACAATGCTAGACAAGACGGTTCCCACTTCATCGACGGGGGCGCGCA
AGATGGGGGGGGGAGGATGAAGAGACGGCGTGCCCCCCAGCACTGTTTCG
ACTGCGGTCACGTGAAGCAGAAGGGACCCTTCAGCCGGTACCACGTGCCA
TCGTTGCCTAGAGCTCGACAAAGCCCTTCCAATATTGCAGACGGTGCAGA
TGGGGCCAAATGCTCTTGCCCCAAGGAACTTCGGCGCAAAGCATTGAAGT
CGCACAGCAAGGTCAAAGACAAGTTTGGCGGCCAGTGCAACTGTGAGGGG
GATGAACGTCATCCGGGGGGGTGCAAGGGTGTACGCATAGGGTCGTGA
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