mRNA_A-nodosum_M_contig9038.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9038.2.1
Unique NamemRNA_A-nodosum_M_contig9038.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9038.2.1 vs. uniprot
Match: D1J7D3_ECTSI (Photosystem II reaction center protein L n=43 Tax=Phaeophyceae TaxID=2870 RepID=D1J7D3_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 4.360e-18
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 114
            MTGPNPNKQEVEISRTSLYWGLLLFF+LAVLFSSYFFN
Sbjct:    1 MTGPNPNKQEVEISRTSLYWGLLLFFILAVLFSSYFFN 38
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BLAST of mRNA_A-nodosum_M_contig9038.2.1 vs. uniprot
Match: A0A1I9LW22_9PHAE (Photosystem II reaction center protein L n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LW22_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 6.200e-18
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 114
            MTGPNPNKQEVE+SRTSLYWGLLLFF+LAVLFSSYFFN
Sbjct:    1 MTGPNPNKQEVEVSRTSLYWGLLLFFILAVLFSSYFFN 38
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BLAST of mRNA_A-nodosum_M_contig9038.2.1 vs. uniprot
Match: A0A7T8G5K4_SCYLO (Photosystem II reaction center protein L n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A7T8G5K4_SCYLO)

HSP 1 Score: 77.8 bits (190), Expect = 6.280e-18
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 114
            MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN
Sbjct:   32 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 69
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BLAST of mRNA_A-nodosum_M_contig9038.2.1 vs. uniprot
Match: PSBL_PHATC (Photosystem II reaction center protein L n=87 Tax=cellular organisms TaxID=131567 RepID=PSBL_PHATC)

HSP 1 Score: 71.2 bits (173), Expect = 1.210e-15
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 114
            MTGPNPNKQ VE++RTSLYWGLLL FVLAVLFSSYFFN
Sbjct:    1 MTGPNPNKQAVELNRTSLYWGLLLIFVLAVLFSSYFFN 38
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BLAST of mRNA_A-nodosum_M_contig9038.2.1 vs. uniprot
Match: A0A516ZAF7_9STRA (Photosystem II reaction center protein L n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAF7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.950e-15
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 114
            M+GPNPN+Q VE+SRTSLYWGLLL FVLAVLFSSYFFN
Sbjct:    1 MSGPNPNRQPVELSRTSLYWGLLLIFVLAVLFSSYFFN 38
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BLAST of mRNA_A-nodosum_M_contig9038.2.1 vs. uniprot
Match: PSBL_PHYPA (Photosystem II reaction center protein L n=237 Tax=Embryophyta TaxID=3193 RepID=PSBL_PHYPA)

HSP 1 Score: 67.4 bits (163), Expect = 4.080e-14
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 114
            MT PNPNKQ VE++RTSLYWGLLL FVLAVLFS+YFFN
Sbjct:    1 MTQPNPNKQSVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
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BLAST of mRNA_A-nodosum_M_contig9038.2.1 vs. uniprot
Match: A0A410YEW8_9MONI (Photosystem II reaction center protein L n=6 Tax=Trichomanoideae TaxID=1983412 RepID=A0A410YEW8_9MONI)

HSP 1 Score: 67.4 bits (163), Expect = 4.080e-14
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 114
            MT PNPNKQ VE++RTSLYWGLLL FVLAVLFS+YFFN
Sbjct:    1 MTPPNPNKQSVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
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BLAST of mRNA_A-nodosum_M_contig9038.2.1 vs. uniprot
Match: PSBL_CYAM1 (Photosystem II reaction center protein L n=7 Tax=Eukaryota TaxID=2759 RepID=PSBL_CYAM1)

HSP 1 Score: 67.4 bits (163), Expect = 4.080e-14
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 114
            M+GPNPNKQ VE++RTSLYWGLL  FVLA+LFSSYFFN
Sbjct:    1 MSGPNPNKQPVELNRTSLYWGLLCIFVLAILFSSYFFN 38
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BLAST of mRNA_A-nodosum_M_contig9038.2.1 vs. uniprot
Match: PSBL_EMIHU (Photosystem II reaction center protein L n=5 Tax=cellular organisms TaxID=131567 RepID=PSBL_EMIHU)

HSP 1 Score: 67.4 bits (163), Expect = 4.080e-14
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 114
            M+ PNPNKQ VE++RTSLYWGLLL FVLAVLFSSYFFN
Sbjct:    1 MSAPNPNKQPVELNRTSLYWGLLLMFVLAVLFSSYFFN 38
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BLAST of mRNA_A-nodosum_M_contig9038.2.1 vs. uniprot
Match: PSBL_HUPLU (Photosystem II reaction center protein L n=8 Tax=Embryophyta TaxID=3193 RepID=PSBL_HUPLU)

HSP 1 Score: 67.4 bits (163), Expect = 4.080e-14
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 114
            MT PNPNKQ VE++RTSLYWGLLL FVLAVLFS+YFFN
Sbjct:    1 MTKPNPNKQSVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9038.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J7D3_ECTSI4.360e-1897.37Photosystem II reaction center protein L n=43 Tax=... [more]
A0A1I9LW22_9PHAE6.200e-1894.74Photosystem II reaction center protein L n=3 Tax=P... [more]
A0A7T8G5K4_SCYLO6.280e-18100.00Photosystem II reaction center protein L n=10 Tax=... [more]
PSBL_PHATC1.210e-1589.47Photosystem II reaction center protein L n=87 Tax=... [more]
A0A516ZAF7_9STRA4.950e-1586.84Photosystem II reaction center protein L n=2 Tax=D... [more]
PSBL_PHYPA4.080e-1484.21Photosystem II reaction center protein L n=237 Tax... [more]
A0A410YEW8_9MONI4.080e-1484.21Photosystem II reaction center protein L n=6 Tax=T... [more]
PSBL_CYAM14.080e-1481.58Photosystem II reaction center protein L n=7 Tax=E... [more]
PSBL_EMIHU4.080e-1484.21Photosystem II reaction center protein L n=5 Tax=c... [more]
PSBL_HUPLU4.080e-1484.21Photosystem II reaction center protein L n=8 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9038contigA-nodosum_M_contig9038:12383..12517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D1J7D3
Preferred namepsbL
PFAMsPsbL
Model size135
Max annot lvl2759|Eukaryota
KEGG koko:K02713
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Exons1
Evalue7.15e-19
EggNOG OGs2EGUI@1|root,2SFCU@2759|Eukaryota
DescriptionOne of the components of the core complex of photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and or dimerization
Cds size135
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870350.6062655-CDS-A-nodosum_M_contig9038:12382..125171680870350.6062655-CDS-A-nodosum_M_contig9038:12382..12517Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9038 12383..12517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9038.2.1prot_A-nodosum_M_contig9038.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9038 12383..12517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9038.2.1

>prot_A-nodosum_M_contig9038.2.1 ID=prot_A-nodosum_M_contig9038.2.1|Name=mRNA_A-nodosum_M_contig9038.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=45bp
MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFNYFFYFK*
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mRNA from alignment at A-nodosum_M_contig9038:12383..12517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9038.2.1 ID=mRNA_A-nodosum_M_contig9038.2.1|Name=mRNA_A-nodosum_M_contig9038.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at A-nodosum_M_contig9038:12383..12517- (Ascophyllum nodosum dioecious)
ATGACAGGTCCAAATCCTAATAAGCAAGAAGTTGAAATCAGTCGTACCTC
ATTATATTGGGGTTTATTGTTATTTTTCGTATTGGCAGTACTTTTTTCGA
GTTATTTTTTTAATTATTTTTTTTATTTTAAATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9038:12383..12517-

>mRNA_A-nodosum_M_contig9038.2.1 ID=mRNA_A-nodosum_M_contig9038.2.1|Name=mRNA_A-nodosum_M_contig9038.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=135bp|location=Sequence derived from alignment at A-nodosum_M_contig9038:12383..12517- (Ascophyllum nodosum dioecious)
ATGACAGGTCCAAATCCTAATAAGCAAGAAGTTGAAATCAGTCGTACCTC
ATTATATTGGGGTTTATTGTTATTTTTCGTATTGGCAGTACTTTTTTCGA
GTTATTTTTTTAATTATTTTTTTTATTTTAAATAG
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