mRNA_A-nodosum_M_contig901.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig901.9.1
Unique NamemRNA_A-nodosum_M_contig901.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig901.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig901contigA-nodosum_M_contig901:59204..59747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870344.6738856-CDS-A-nodosum_M_contig901:59203..592821680870344.6738856-CDS-A-nodosum_M_contig901:59203..59282Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig901 59204..59282 +
1680870344.753358-CDS-A-nodosum_M_contig901:59668..597211680870344.753358-CDS-A-nodosum_M_contig901:59668..59721Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig901 59669..59721 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870344.7658083-UTR-A-nodosum_M_contig901:59721..597471680870344.7658083-UTR-A-nodosum_M_contig901:59721..59747Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig901 59722..59747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig901.9.1prot_A-nodosum_M_contig901.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig901 59204..59721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig901.9.1

>prot_A-nodosum_M_contig901.9.1 ID=prot_A-nodosum_M_contig901.9.1|Name=mRNA_A-nodosum_M_contig901.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=44bp
MEYEGYNRGRGQSITSPRVARRHRLFGASRGPFLKQQGLQGPS*
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mRNA from alignment at A-nodosum_M_contig901:59204..59747+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig901.9.1 ID=mRNA_A-nodosum_M_contig901.9.1|Name=mRNA_A-nodosum_M_contig901.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=544bp|location=Sequence derived from alignment at A-nodosum_M_contig901:59204..59747+ (Ascophyllum nodosum dioecious)
ATGGAATACGAAGGTTATAACCGTGGGAGAGGCCAAAGCATAACATCCCC
GCGGGTTGCTCGACGACATCGTTTATTTGGTTAAGTGCGGTGGGTATAGA
TGAAACGACGCAACGGCCTGGAAGAGGATGACGATTCCGCGAAATTGTGC
GGGATTCCTGGCGTTTTGTTCCATACTGGTATACACTCGCCCAAAGTACA
GATTGGATACAAAGTAGCATTCTCGCCAAGTGACTAGATGCGATAGGAGC
ACAACAACAACGTCTACACCTAATAACTGTACATGCCTCAGCGCAGACAA
AATTTTACAAAGGTGACATCTGTCTTCTTTCACGAGTTTGAGCTACGTTA
CATTTATTGGTGAGGGTGTGTGGGACCTACATGCAGTGTTTCTCACAATG
CTCCACTACAAGAATTACGCCACACACAGAGACATGTCACGAATTATCGA
CCGTCGTACCTTTAGGTGCATCACGTGGCCCGTTTTTGAAGCAGCAAGGA
TTACAGGGTCCTTCGTAGCTCTGATGCCCGGCGCCCCGAAGCGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig901:59204..59747+

>mRNA_A-nodosum_M_contig901.9.1 ID=mRNA_A-nodosum_M_contig901.9.1|Name=mRNA_A-nodosum_M_contig901.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=132bp|location=Sequence derived from alignment at A-nodosum_M_contig901:59204..59747+ (Ascophyllum nodosum dioecious)
ATGGAATACGAAGGTTATAACCGTGGGAGAGGCCAAAGCATAACATCCCC
GCGGGTTGCTCGACGACATCGTTTATTTGGTGCATCACGTGGCCCGTTTT
TGAAGCAGCAAGGATTACAGGGTCCTTCGTAG
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