mRNA_A-nodosum_M_contig901.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig901.15.1
Unique NamemRNA_A-nodosum_M_contig901.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig901.15.1 vs. uniprot
Match: A0A6H5JMW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW0_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 4.210e-27
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 3 
Query:    3 NAQLRLMLETGVELCGGDAALYVRVDPTCPIYWVRWDNRKSKADLDVVCDLPHRGVRATMLEKVQFNADSTGVVKIR 233
            NAQL+LML+ G E C  +AALY+RVD TCPIYW RW N+KSKADLD+ CD+P RG R  +L+KV F  D +G VK+R
Sbjct:   19 NAQLQLMLDPGTERCTPEAALYLRVDKTCPIYWTRW-NKKSKADLDICCDIPQRGTRVKILDKVGFGDDGSGGVKVR 94
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BLAST of mRNA_A-nodosum_M_contig901.15.1 vs. uniprot
Match: D7FYZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ0_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.070e-25
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 3 
Query:    3 NAQLRLMLETGVELCGGDAALYVRVDPTCPIYWVRWDNRKSKADLDVVCDLPHRGVRATMLEKVQFNADSTGVVKIR 233
            NAQL+LMLE G E C  +AALY+RVD TCPIYW RW N+KSKADLD+ CD+P RG R  +L+KV F  D +G VK+R
Sbjct:  393 NAQLQLMLEPGTERCTPEAALYLRVDKTCPIYWTRW-NKKSKADLDICCDIPQRGTRVKILDKVGFGDDGSGGVKVR 468
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BLAST of mRNA_A-nodosum_M_contig901.15.1 vs. uniprot
Match: A0A6H5KW52_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW52_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.060e-21
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 3 
Query:    3 NAQLRLMLETGVELCGGDAALYVRVDPTCPIYWVRWDNRKSKADLDVVCDLPHRGVRATMLEKVQFNAD--STGVVKIR 233
            NAQL+LMLE G E C  +AALY+RV  TCP++WVRW++ K+KADLD+ CD+P RG+RA +L     + D  S G V++R
Sbjct:   54 NAQLQLMLEPGTERCTPEAALYLRVAATCPVFWVRWES-KTKADLDISCDIPQRGLRANILASFSSSGDGSSGGAVRVR 131
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BLAST of mRNA_A-nodosum_M_contig901.15.1 vs. uniprot
Match: A0A6H5JDB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB1_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.370e-19
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 3 
Query:    3 NAQLRLMLETGVELCGGDAALYVRVDPTCPIYWVRWDNRKSKADLDVVCDLPHRGVRATMLEKVQFNAD--STGVVKIR 233
            NAQL+LMLE G E C  +AALY+RV  TCP++WVRW++ K+KADLD+ CD+P RG+RA +L     + D  S G V++R
Sbjct: 1054 NAQLQLMLEPGTERCTPEAALYLRVAATCPVFWVRWES-KTKADLDISCDIPQRGLRANILASFSSSGDGSSGGAVRVR 1131
[Close]
BLAST of mRNA_A-nodosum_M_contig901.15.1 vs. uniprot
Match: A0A6H5KEI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.990e-18
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 3 
Query:    3 NAQLRLMLETGVELCGGDAALYVRVDPTCPIYWVRWDNRKSKADLDVVCDLPHRGVRATMLEKVQFNADSTGVVKIR 233
            NAQL+LMLE G E C  +AALY+RV  TCP++WVR ++ K+KADLD+ CD+P RG+RA +LE V  + D +    +R
Sbjct:  448 NAQLQLMLEPGTERCTPEAALYLRVAATCPVFWVRSES-KTKADLDISCDIPQRGLRANILETVSSSGDGSSGSAVR 523
[Close]
BLAST of mRNA_A-nodosum_M_contig901.15.1 vs. uniprot
Match: A0A6H5KE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE40_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 5.730e-18
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 3 
Query:    3 NAQLRLMLETGVELCGGDAALYVRVDPTCPIYWVRWDNRKSKADLDVVCDLPHRGVRATMLEKVQFNAD--STGVVKIR 233
            NAQL+LML+ G E C  +AALY+RV  TCP++WVR ++ K+KADLD+ CD+P RG+RA +LE +  + D  S G V +R
Sbjct:  288 NAQLQLMLKPGTERCTPEAALYLRVAATCPVFWVRSES-KTKADLDISCDIPQRGLRANILETLSSSGDGSSGGAVSVR 365
[Close]
BLAST of mRNA_A-nodosum_M_contig901.15.1 vs. uniprot
Match: A0A6H5K708_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K708_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.050e-17
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 3 
Query:    3 NAQLRLMLETGVELCGGDAALYVRVDPTCPIYWVRWDNRKSKADLDVVCDLPHRGVRATMLEKVQFNAD--STGVVKIR 233
            NAQL+L LE+G E C  +AALY+RV  TCP+ WVR ++ K+KADLD+ CD+P RG+RA +LE    + D  S G VK+R
Sbjct:  462 NAQLQLTLESGTERCTPEAALYLRVAATCPVLWVRSES-KTKADLDISCDIPQRGLRANILETFSSSGDGSSGGAVKVR 539
[Close]
BLAST of mRNA_A-nodosum_M_contig901.15.1 vs. uniprot
Match: A0A6H5K9C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9C3_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.590e-14
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3 
Query:    3 NAQLRLMLETGVELCGGDAALYVRVDPTCPIYWVRWDNRKSKADLDVVCDLPHRGVRATMLEKVQFNAD--STGVVKIR 233
            NAQL+LMLE G E       LY RV  TCP++WVR ++ K+KADLD+ CD+P RG+RA +LE    + D  S G V++R
Sbjct:  128 NAQLQLMLEPGTE------PLYWRVAATCPVFWVRSES-KTKADLDISCDIPQRGLRANILETFSSSGDGSSGGAVRVR 199
[Close]
BLAST of mRNA_A-nodosum_M_contig901.15.1 vs. uniprot
Match: A0A6H5KBS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.850e-10
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 3 
Query:    3 NAQLRLMLETGVELCGGDAALYVRVDPTCPIYWVRWDNRKSKADLDVVCDLPHRGVRATML---EKVQFNADSTGVV 224
            N QL+ ML  G E+CG  A LY+RV PTCP+Y++RW N   +A ++    +P  G RA +L    +V+  A +T V+
Sbjct:   47 NVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYMRWTNDVKQATVEFTSKVPQSGSRAEVLGPFSQVEGQAFATPVI 123
[Close]
BLAST of mRNA_A-nodosum_M_contig901.15.1 vs. uniprot
Match: A0A6H5JUE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE7_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.480e-10
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 3 
Query:    3 NAQLRLMLETGVELCGGDAALYVRVDPTCPIYWVRWDNRKSKADLDVVCDLPHRGVRATML---EKVQFNADSTGVV 224
            N QL+ ML  G E CG  A LY+RV PTCP+Y++RW N   +A ++    +P  G RA +L    +V+  A +T ++
Sbjct:   47 NVQLKRMLVPGKEGCGPGAELYLRVAPTCPLYYMRWTNDVKQATVEFTSKVPQSGSRAEVLGPFSRVEGQAFATPMI 123
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig901.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JMW0_9PHAE4.210e-2762.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYZ0_ECTSI4.070e-2563.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW52_9PHAE3.060e-2154.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDB1_9PHAE1.370e-1954.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEI5_9PHAE2.990e-1853.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE40_9PHAE5.730e-1853.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K708_9PHAE1.050e-1754.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9C3_9PHAE3.590e-1450.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBS8_9PHAE1.850e-1041.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUE7_9PHAE3.480e-1040.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig901contigA-nodosum_M_contig901:71341..71573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size233
Hectar predicted targeting categoryother localisation
Exons1
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870345.3335614-UTR-A-nodosum_M_contig901:71340..713601680870345.3335614-UTR-A-nodosum_M_contig901:71340..71360Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig901 71341..71360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870345.3553-CDS-A-nodosum_M_contig901:71360..715731680870345.3553-CDS-A-nodosum_M_contig901:71360..71573Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig901 71361..71573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig901.15.1prot_A-nodosum_M_contig901.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig901 71361..71573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig901.15.1

>prot_A-nodosum_M_contig901.15.1 ID=prot_A-nodosum_M_contig901.15.1|Name=mRNA_A-nodosum_M_contig901.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=71bp
MLETGVELCGGDAALYVRVDPTCPIYWVRWDNRKSKADLDVVCDLPHRGV
RATMLEKVQFNADSTGVVKIR
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mRNA from alignment at A-nodosum_M_contig901:71341..71573+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig901.15.1 ID=mRNA_A-nodosum_M_contig901.15.1|Name=mRNA_A-nodosum_M_contig901.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=233bp|location=Sequence derived from alignment at A-nodosum_M_contig901:71341..71573+ (Ascophyllum nodosum dioecious)
ACAACGCGCAGCTTCGGCTCATGCTAGAAACGGGGGTGGAGTTGTGCGGT
GGTGATGCGGCACTCTATGTGCGGGTAGATCCGACGTGCCCCATCTACTG
GGTGCGGTGGGACAACCGCAAGTCTAAAGCGGACCTTGACGTTGTCTGTG
ACCTTCCTCATCGGGGTGTTCGGGCGACGATGCTCGAGAAGGTCCAGTTT
AACGCCGACAGTACAGGTGTCGTTAAGATACGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig901:71341..71573+

>mRNA_A-nodosum_M_contig901.15.1 ID=mRNA_A-nodosum_M_contig901.15.1|Name=mRNA_A-nodosum_M_contig901.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=213bp|location=Sequence derived from alignment at A-nodosum_M_contig901:71341..71573+ (Ascophyllum nodosum dioecious)
ATGCTAGAAACGGGGGTGGAGTTGTGCGGTGGTGATGCGGCACTCTATGT
GCGGGTAGATCCGACGTGCCCCATCTACTGGGTGCGGTGGGACAACCGCA
AGTCTAAAGCGGACCTTGACGTTGTCTGTGACCTTCCTCATCGGGGTGTT
CGGGCGACGATGCTCGAGAAGGTCCAGTTTAACGCCGACAGTACAGGTGT
CGTTAAGATACGC
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