mRNA_A-nodosum_M_contig900.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig900.2.1
Unique NamemRNA_A-nodosum_M_contig900.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig900.2.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.620e-38
Identity = 69/109 (63.30%), Postives = 82/109 (75.23%), Query Frame = 1 
Query:    7 GACADTDRSGFTFPIFEYCHFDYDSSLSSEDDYTGGNDICGDRSIVGTTVIGGYVYRGQAYADLLYGAYVFADFTARNIFYILPQDDGSWTTGTIISDGSIAVYSFAED 333
            G C DTDRS FTFPI+EYCH DY S  + E D+  G DICG R + GT VIGGYVYRG  +AD+LYGAYVF D T+ NI+YI+ QD+G W+ GTIISD S++V  FAED
Sbjct:  371 GPCLDTDRSAFTFPIYEYCHPDYSSDDADEADFVAGVDICGTRMVSGTAVIGGYVYRGTYFADVLYGAYVFGDNTSNNIYYIV-QDNGVWSVGTIISDSSVSVIGFAED 478
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BLAST of mRNA_A-nodosum_M_contig900.2.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.950e-37
Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:   13 CADTDRSGFTFPIFEYCHFDYDSSLSSEDDYTGGNDICGDRSIVGTTVIGGYVYRGQAYADLLYGAYVFADFTARNIFYILPQDDGSWTTGTIISDGSIAVYSFAEDV 336
            C   DRSGFT+P+FEYCH DYDS+ + E ++TGG D CGDR +VG  VIGGYVYRG  ++DLL GAY+F D T RNI Y L +++  W  GTIISD S+ + SFAEDV
Sbjct:  315 CDGVDRSGFTYPLFEYCHPDYDSTDADEQEFTGGADTCGDRFVVGNCVIGGYVYRGNFFSDLLDGAYIFGDSTMRNI-YFLREEEAGWAVGTIISDASVQIVSFAEDV 421
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BLAST of mRNA_A-nodosum_M_contig900.2.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 3.900e-36
Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:   13 CADTDRSGFTFPIFEYCHFDYDSSLSSEDDYTGGNDICGDRSIVGTTVIGGYVYRGQAYADLLYGAYVFADFTARNIFYILPQDDGSWTTGTIISDGSIAVYSFAEDV 336
            C   DRSGFTFP++EYCH DY S    +D++T G DICGDR ++G  VIGGYVYRG  ++DLLYG Y+F D T +NIFY++ + DG W+ GTIISD S+ + SFAEDV
Sbjct:  375 CDGVDRSGFTFPLYEYCHPDYSSV--GDDEFTAGVDICGDRVLLGNAVIGGYVYRGNFFSDLLYGHYIFGDSTMKNIFYLVKEGDG-WSLGTIISDASVQIISFAEDV 479
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BLAST of mRNA_A-nodosum_M_contig900.2.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 7.410e-36
Identity = 62/109 (56.88%), Postives = 84/109 (77.06%), Query Frame = 1 
Query:   10 ACADTDRSGFTFPIFEYCHFDYDSSLSSEDDYTGGNDICGDRSIVGTTVIGGYVYRGQAYADLLYGAYVFADFTARNIFYILPQDDGSWTTGTIISDGSIAVYSFAEDV 336
            AC    RSGFTFP++EYCH DY S+   +D++T GNDICGDR ++G  VIGGYVYRG  ++DLL GAY+F D T +NI+Y++ ++DG W+ GTIISD S+ + SF+ED+
Sbjct:  437 ACDGISRSGFTFPLYEYCHPDYQST--GDDEFTAGNDICGDRVLLGNAVIGGYVYRGNYFSDLLNGAYIFGDSTMKNIYYLV-EEDGGWSLGTIISDASVQIISFSEDI 542
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BLAST of mRNA_A-nodosum_M_contig900.2.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 6.560e-35
Identity = 61/108 (56.48%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:   13 CADTDRSGFTFPIFEYCHFDYDSSLSSEDDYTGGNDICGDRSIVGTTVIGGYVYRGQAYADLLYGAYVFADFTARNIFYILPQDDGSWTTGTIISDGSIAVYSFAEDV 336
            C   DRS FT+P+FEYCH D+DS+ + E ++TGG D CG+R +VG  VIGGYVYRG  ++DLL GAY+F D T RNI+++  ++DG W  GTI+SD S+ + SFAEDV
Sbjct:  356 CDGVDRSDFTYPLFEYCHPDFDSTDADEQEFTGGADTCGNRFVVGNCVIGGYVYRGNFFSDLLDGAYIFGDSTMRNIYFLKEEEDG-WAVGTIVSDASVQIISFAEDV 462
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BLAST of mRNA_A-nodosum_M_contig900.2.1 vs. uniprot
Match: A0A6H5KS07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS07_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.240e-22
Identity = 51/107 (47.66%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:   13 CADTDRSGFTFPIFEYCHFDYDSSLSSEDDYTGGNDICGDRSIVGTTVIGGYVYRGQAYADLLYGAYVFADFTARNIFYILPQDDGSWTTGTIISDGSIAVYSFAED 333
            C   DRS FTFP F YCH D+   +           ICGDRS++GT VI GYVYRG  Y DLL G  +FADFT   ++++ P   G W +GTI  D   AV   AED
Sbjct:  327 CEFLDRSPFTFPEFNYCHPDF-YPVDHPSYIVSDQSICGDRSVIGTAVIAGYVYRGAKYDDLLGGNLIFADFTLNRLYHLFPTKGGGWGSGTIKGDDFFAVSHIAED 432
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BLAST of mRNA_A-nodosum_M_contig900.2.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.240e-22
Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    7 GACADTDRSGFTFPIFEYCHFDYDSSLSSEDDYTGGNDICGDRSIVGTTVIGGYVYRGQAYADLLYGAYVFADFTARNIFYILPQDDGSWTTGTIIS 297
            G C+  DR+ + FP+FEYCH DYDSS    D        CGDR++ G +VIGG+VYRG  Y D+L G Y+FAD +  ++ ++ P   G WT GT++S
Sbjct:  445 GECSGLDRADYAFPVFEYCHVDYDSSQEEFD-------ACGDRTVTGLSVIGGHVYRGAKYDDILGGHYIFADHSVGSLHHLAPAAGGGWTAGTVLS 534
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BLAST of mRNA_A-nodosum_M_contig900.2.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 9.600e-14
Identity = 41/107 (38.32%), Postives = 50/107 (46.73%), Query Frame = 1 
Query:   13 CADTDRSGFTFPIFEYCHFDYDSSLSSEDDYTGGNDICGDRSIVGTTVIGGYVYRGQAYADLLYGAYVFADFTARNIFYILPQDDGSWTTGTIISDGSIAVYSFAED 333
            C    RSGFTFP+FEYCH D+DS+ + E  +TGG D CG+R +                                       +DDG W  GTIISD SI + SFAED
Sbjct:  276 CDGISRSGFTFPLFEYCHPDFDSTDADEQKFTGGADTCGNRFV--------------------------------------EKDDGGWAVGTIISDASIQIISFAED 344
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BLAST of mRNA_A-nodosum_M_contig900.2.1 vs. uniprot
Match: A0A1Q8CU35_9PSEU (Uncharacterized protein n=1 Tax=Actinophytocola xanthii TaxID=1912961 RepID=A0A1Q8CU35_9PSEU)

HSP 1 Score: 57.0 bits (136), Expect = 4.010e-7
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:  136 SIVGTTVIGGYVYRGQAYADLLYGAYVFADFTARNIFYILPQDDGSWTTGTIISDGSIAVYSFAED 333
            S  G +VIGG+VYRGQ +ADL+ G YV  D+ +   + I    DG++TTGTI  +    V SF ED
Sbjct:  311 SAQGCSVIGGHVYRGQQFADLVEGTYVATDYCSSTAWAIRADGDGTYTTGTI-GEFPTQVTSFGED 375
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BLAST of mRNA_A-nodosum_M_contig900.2.1 vs. uniprot
Match: UPI001CA4110A (PQQ-dependent sugar dehydrogenase n=1 Tax=Halobaculum rubrum TaxID=2872158 RepID=UPI001CA4110A)

HSP 1 Score: 55.1 bits (131), Expect = 1.840e-6
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:  127 GDRSIVGTTVIGGYVYRGQAYADLLYGAYVFADFT-ARNIFYILPQDDGSWTTGTIISDG-SIAVYSFAE 330
            GD ++ G +VIGGYVYRG A ADL  G YVF D+    ++F   P++ G W T  + +DG    + SF E
Sbjct:  369 GDAALSGISVIGGYVYRGDAVADLA-GTYVFGDYRPGGDLFLAEPRESGRWPTRAVPTDGLDSGLLSFGE 437
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig900.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G6T7_ECTSI1.620e-3863.30WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KT40_9PHAE1.950e-3760.19GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JZF5_9PHAE3.900e-3659.26GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G4P3_ECTSI7.410e-3656.88Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
D7G961_ECTSI6.560e-3556.48Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5KS07_9PHAE1.240e-2247.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJP1_ECTSI1.240e-2246.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G960_ECTSI9.600e-1438.32Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A1Q8CU35_9PSEU4.010e-746.97Uncharacterized protein n=1 Tax=Actinophytocola xa... [more]
UPI001CA4110A1.840e-644.29PQQ-dependent sugar dehydrogenase n=1 Tax=Halobacu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig900contigA-nodosum_M_contig900:8442..9225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6T7
PFAMsCAP,Chitin_bind_1,DUF1929,GLEYA,GSDH,Glyco_hydro_71,Glyoxal_oxid_N,Pectate_lyase_3,SRCR,WSC
Model size337
Max annot lvl2759|Eukaryota
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.66e-39
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
EC1.1.3.9,1.2.3.15,3.2.1.59
Descriptionprotein xylosyltransferase activity
Cds size336
COG categoryU
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870344.532378-CDS-A-nodosum_M_contig900:8441..85411680870344.532378-CDS-A-nodosum_M_contig900:8441..8541Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig900 8442..8541 -
1680870344.617096-CDS-A-nodosum_M_contig900:8803..88791680870344.617096-CDS-A-nodosum_M_contig900:8803..8879Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig900 8804..8879 -
1680870344.6312397-CDS-A-nodosum_M_contig900:9065..92251680870344.6312397-CDS-A-nodosum_M_contig900:9065..9225Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig900 9066..9225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig900.2.1prot_A-nodosum_M_contig900.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig900 8442..9225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig900.2.1

>prot_A-nodosum_M_contig900.2.1 ID=prot_A-nodosum_M_contig900.2.1|Name=mRNA_A-nodosum_M_contig900.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=112bp
EYGACADTDRSGFTFPIFEYCHFDYDSSLSSEDDYTGGNDICGDRSIVGT
TVIGGYVYRGQAYADLLYGAYVFADFTARNIFYILPQDDGSWTTGTIISD
GSIAVYSFAEDV
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mRNA from alignment at A-nodosum_M_contig900:8442..9225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig900.2.1 ID=mRNA_A-nodosum_M_contig900.2.1|Name=mRNA_A-nodosum_M_contig900.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=784bp|location=Sequence derived from alignment at A-nodosum_M_contig900:8442..9225- (Ascophyllum nodosum dioecious)
GAATACGGGGCTTGCGCAGATACTGACCGATCAGGCTTCACTTTCCCGAT
ATTTGAGTACTGCCACTTCGATTACGACTCTAGTCTTTCCTCTGAGGACG
ACTACACGGGTGGAAACGACATCTGTGGTGACCGGAGTATTGTCGGAACG
ACAGTTATTGGTGAGAGTTTGTGCATCAGGAAGTGGACGATTTTTAGCAT
GAAACCAGTTGGACGCAGCGCACACGATACCAGCAACATGTCGTGTGGTT
ATCCCAGAGTGTTACTGCTTCGCCGAACGCAATTTTAACTGGTCTTCATG
CTTTTGCCTCGTTATCCAACTACTTTCTTCTTACGTGGCTCTTAAGGAGG
ATATGTTTATAGAGGGCAAGCGTACGCTGACCTCCTCTACGGTGCCTATG
TTTTCGCCGACTTCACGGCCAGGTACGTGACTTTTGCATTCTACGATTGT
GGCGATAGAGACATCAGGGTACACTATATCCAAAGCGCTAAACGGCAGGG
GCTATTTTTGCGCCCTTCAGTCAAATCGAGGGTCTACCGCGTGGAATAGG
TTTGCTCGGATTCGCCGAACTGATCGCTAGCATGGTGCATCGATAGGAAC
GAACTGCATCCACAAGAACGATCGACCCCTGTCATGCCGTGCCTCATCCC
CATGAAATTATCACACGGTCTTGGTTGGTGGCAGGAACATCTTCTACATC
CTTCCACAGGACGACGGATCGTGGACAACGGGCACTATCATAAGCGACGG
GAGCATAGCGGTGTACTCTTTTGCCGAAGACGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig900:8442..9225-

>mRNA_A-nodosum_M_contig900.2.1 ID=mRNA_A-nodosum_M_contig900.2.1|Name=mRNA_A-nodosum_M_contig900.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at A-nodosum_M_contig900:8442..9225- (Ascophyllum nodosum dioecious)
GAATACGGGGCTTGCGCAGATACTGACCGATCAGGCTTCACTTTCCCGAT
ATTTGAGTACTGCCACTTCGATTACGACTCTAGTCTTTCCTCTGAGGACG
ACTACACGGGTGGAAACGACATCTGTGGTGACCGGAGTATTGTCGGAACG
ACAGTTATTGGAGGATATGTTTATAGAGGGCAAGCGTACGCTGACCTCCT
CTACGGTGCCTATGTTTTCGCCGACTTCACGGCCAGGAACATCTTCTACA
TCCTTCCACAGGACGACGGATCGTGGACAACGGGCACTATCATAAGCGAC
GGGAGCATAGCGGTGTACTCTTTTGCCGAAGACGTG
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