mRNA_A-nodosum_M_contig900.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig900.1.1
Unique NamemRNA_A-nodosum_M_contig900.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig900.1.1 vs. uniprot
Match: A0A6H5K223_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K223_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.120e-12
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   40 EDVEIPTEE---EPVLYTYLGCYQD-ETERIFSGNVLFRYQELTIEFCAGFCQGSAYFGTQYGQECWCGEA 240
            + VE PT     EP   TYLGCY D +T+RIF   V      +T+ FCA FC   AY+GTQYG+ECWCG +
Sbjct:   64 DPVETPTPVAVIEPTDPTYLGCYVDSQTDRIFP--VTTASDVMTLAFCADFCAEYAYYGTQYGEECWCGNS 132          
BLAST of mRNA_A-nodosum_M_contig900.1.1 vs. uniprot
Match: A0A6A6XW66_9PLEO (WSC domain-containing protein 2 n=1 Tax=Melanomma pulvis-pyrius CBS 109.77 TaxID=1314802 RepID=A0A6A6XW66_9PLEO)

HSP 1 Score: 68.6 bits (166), Expect = 1.180e-11
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 1
Query:   16 LPCG----DLCGEDVEI---------PTEEEPVL--YTYLGCYQDETE-RIFSGNVLFRYQELTIEFCAGFCQGSAYFGTQYGQECWCGEA 240
            +PC     +LCG    +         P    P +  YTY GCY D    R+   + LF + ++T+  CAGFC G  YFG +YG++CWCG+A
Sbjct:  690 MPCAGNRAELCGAGYRLTVFKSLTLYPAPSNPAISGYTYSGCYIDNVNVRVLGDSFLFAH-DMTVPMCAGFCAGKKYFGVEYGEQCWCGDA 779          
BLAST of mRNA_A-nodosum_M_contig900.1.1 vs. uniprot
Match: A0A6G1GAA0_9PEZI (WSC-domain-containing protein n=1 Tax=Eremomyces bilateralis CBS 781.70 TaxID=1392243 RepID=A0A6G1GAA0_9PEZI)

HSP 1 Score: 64.3 bits (155), Expect = 3.570e-10
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   55 PTEEEPVL--YTYLGCYQDETERIFSGNVLFRYQE----LTIEFCAGFCQGSAYFGTQYGQECWCGEA 240
            P ++ P +  Y Y+GC  D  +R   G       E    +++E+CA FCQG+ YFG QYGQEC+CGE+
Sbjct:  373 PADDGPTVQGYEYIGCANDSHDRTLKGATTIYTAEAGPLMSLEYCADFCQGTTYFGVQYGQECFCGES 440          
BLAST of mRNA_A-nodosum_M_contig900.1.1 vs. uniprot
Match: A0A6A6P5T9_9PEZI (Uncharacterized protein n=1 Tax=Lineolata rhizophorae TaxID=578093 RepID=A0A6A6P5T9_9PEZI)

HSP 1 Score: 63.9 bits (154), Expect = 5.040e-10
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   55 PTEEEPVLYTYLGCYQDET-ERIFSGNVLFRYQELTIEFCAGFCQGSAYFGTQYGQECWCGE 237
            P   E   Y+Y+GC  D    R+     LF  Q LT+E CA FC GS YFGT+YGQEC+CG+
Sbjct:  914 PANAEIPGYSYVGCKTDSVGARVLDAMTLFDAQ-LTVEMCADFCDGSTYFGTEYGQECYCGD 974          
BLAST of mRNA_A-nodosum_M_contig900.1.1 vs. uniprot
Match: A0A2T2P2A1_CORCC (Heme peroxidase n=1 Tax=Corynespora cassiicola Philippines TaxID=1448308 RepID=A0A2T2P2A1_CORCC)

HSP 1 Score: 63.5 bits (153), Expect = 6.890e-10
Identity = 28/53 (52.83%), Postives = 33/53 (62.26%), Query Frame = 1
Query:   79 YTYLGCYQDETE-RIFSGNVLFRYQELTIEFCAGFCQGSAYFGTQYGQECWCG 234
            Y Y GCY D    R+ + N LF    +TI  CA FC GS YFGT+YG EC+CG
Sbjct:  955 YNYTGCYTDSVSARVLTDNFLFDGSAMTISKCAEFCNGSKYFGTEYGSECYCG 1007          
BLAST of mRNA_A-nodosum_M_contig900.1.1 vs. uniprot
Match: UPI001900F19C (glyoxal oxidase precursor n=1 Tax=Colletotrichum karsti TaxID=1095194 RepID=UPI001900F19C)

HSP 1 Score: 62.8 bits (151), Expect = 1.280e-9
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    4 NIYYLPCGDLCGEDVEIPTEEEPVL--YTYLGCYQDET-ERIFSGNVLFRYQELTIEFCAGFCQGSAYFGTQYGQECWCG 234
            N+Y LP G L     +  T    V+  ++Y  C+ D    R  S NVLF   ++T+E CA FCQGS YFG ++G+EC+CG
Sbjct:  346 NVYALPTGSL-----QATTNPTGVIKGFSYQSCWIDNVLGRSLSDNVLFA-DDMTVEKCAAFCQGSKYFGLEFGKECYCG 419          
BLAST of mRNA_A-nodosum_M_contig900.1.1 vs. uniprot
Match: G2QYK5_THETT (Uncharacterized protein n=2 Tax=Thermothielavioides terrestris TaxID=2587410 RepID=G2QYK5_THETT)

HSP 1 Score: 61.6 bits (148), Expect = 3.120e-9
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   10 YYLPCGDLCGEDVEIPTE--EEPVL------YTYLGCYQDETE-RIFSGNVLFRYQELTIEFCAGFCQGSAYFGTQYGQECWCG 234
            Y   CGD    +V + +E  +EP        ++Y  C+ D+   R  + NVL R  ++T+E CA FCQGS+YFG +YG+EC+CG
Sbjct:  304 YNNVCGDADRLNVFLTSECKDEPANVPSVDGFSYKSCWTDDVNNRSLADNVL-RSDDMTVEKCAAFCQGSSYFGVEYGRECYCG 386          
BLAST of mRNA_A-nodosum_M_contig900.1.1 vs. uniprot
Match: D8LEK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 3.150e-9
Identity = 31/79 (39.24%), Postives = 40/79 (50.63%), Query Frame = 1
Query:    4 NIYYLPCGDLCGEDVEIPTEEEPVLYTYLGCYQDETERIFSGNVLFRYQELTIEFCAGFCQGSAYFGTQYGQECWCGEA 240
            N+Y  P  D        P +E P     LGCY D+ E     +++     +T E C   C+GS YF TQYG+ECWCG A
Sbjct:  282 NVYLYP-DDSTPSPTPSPIQEGPS--PALGCYADDPEDRIMDDLVLSDSSMTTELCELTCEGSTYFATQYGRECWCGSA 357          
BLAST of mRNA_A-nodosum_M_contig900.1.1 vs. uniprot
Match: A0A163GAF0_DIDRA (Heme binding n=1 Tax=Didymella rabiei TaxID=5454 RepID=A0A163GAF0_DIDRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.480e-9
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   43 DVEIPTEEEPVLYTYLGCYQDETE-RIFSGNVLFRYQELTIEFCAGFCQGSAYFGTQYGQECWCGEA 240
            ++ +P     + Y Y GCY D+   R+ + +VL R   +T+E CA  C GS YFGTQ+G EC+CGE+
Sbjct:  854 NIAVPANPTILGYGYKGCYTDDVNARVLTSSVL-RDDGMTVERCASACAGSYYFGTQHGDECYCGES 919          
BLAST of mRNA_A-nodosum_M_contig900.1.1 vs. uniprot
Match: UPI001E8E664E (heme peroxidase n=1 Tax=Emericellopsis atlantica TaxID=2614577 RepID=UPI001E8E664E)

HSP 1 Score: 60.8 bits (146), Expect = 6.100e-9
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 1
Query:    4 NIYYLPCGDLCGEDVEIPTEEEPVLYTYLGCYQDETERIFSGNVLFRYQELTIEFCAGFCQGSAYFGTQYGQECWCG 234
            ++Y  P  D+ G D E P       YT+ GCY D +      +      E+T E CA FC+G AYFGT+YGQEC+CG
Sbjct:  784 SLYMNP--DIQGGDPEQPLTVGN--YTFEGCYTDSSASRALDDKRTAGSEMTNEVCAAFCEGFAYFGTEYGQECYCG 856          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig900.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K223_9PHAE5.120e-1250.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A6XW66_9PLEO1.180e-1137.36WSC domain-containing protein 2 n=1 Tax=Melanomma ... [more]
A0A6G1GAA0_9PEZI3.570e-1042.65WSC-domain-containing protein n=1 Tax=Eremomyces b... [more]
A0A6A6P5T9_9PEZI5.040e-1050.00Uncharacterized protein n=1 Tax=Lineolata rhizopho... [more]
A0A2T2P2A1_CORCC6.890e-1052.83Heme peroxidase n=1 Tax=Corynespora cassiicola Phi... [more]
UPI001900F19C1.280e-942.50glyoxal oxidase precursor n=1 Tax=Colletotrichum k... [more]
G2QYK5_THETT3.120e-940.48Uncharacterized protein n=2 Tax=Thermothielavioide... [more]
D8LEK9_ECTSI3.150e-939.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A163GAF0_DIDRA4.480e-943.28Heme binding n=1 Tax=Didymella rabiei TaxID=5454 R... [more]
UPI001E8E664E6.100e-942.86heme peroxidase n=1 Tax=Emericellopsis atlantica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig900contigA-nodosum_M_contig900:6913..8127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G4P3
PFAMsCAP,Chitin_bind_1,DUF1929,GLEYA,GSDH,Glyco_hydro_71,Glyoxal_oxid_N,Pectate_lyase_3,SRCR,WSC
Model size248
Max annot lvl2759|Eukaryota
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.88e-10
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
EC1.1.3.9,1.2.3.15,3.2.1.59
Descriptionprotein xylosyltransferase activity
Cds size246
COG categoryU
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870344.474905-CDS-A-nodosum_M_contig900:6913..69371680870344.474905-CDS-A-nodosum_M_contig900:6913..6937Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig900 6914..6937 -
1680870344.4884815-CDS-A-nodosum_M_contig900:7221..72781680870344.4884815-CDS-A-nodosum_M_contig900:7221..7278Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig900 7222..7278 -
1680870344.4998965-CDS-A-nodosum_M_contig900:7962..81271680870344.4998965-CDS-A-nodosum_M_contig900:7962..8127Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig900 7963..8127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig900.1.1prot_A-nodosum_M_contig900.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig900 6914..8127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig900.1.1

>prot_A-nodosum_M_contig900.1.1 ID=prot_A-nodosum_M_contig900.1.1|Name=mRNA_A-nodosum_M_contig900.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=82bp
NNIYYLPCGDLCGEDVEIPTEEEPVLYTYLGCYQDETERIFSGNVLFRYQ
ELTIEFCAGFCQGSAYFGTQYGQECWCGEATD
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mRNA from alignment at A-nodosum_M_contig900:6913..8127-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig900.1.1 ID=mRNA_A-nodosum_M_contig900.1.1|Name=mRNA_A-nodosum_M_contig900.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1215bp|location=Sequence derived from alignment at A-nodosum_M_contig900:6913..8127- (Ascophyllum nodosum dioecious)
AACAATATCTATTATCTGCCATGCGGCGATCTCTGCGGCGAAGACGTGGA AATACCCACTGAAGAAGAACCCGTCCTGTACACGTACCTCGGGTGCTACC AGGACGAAACTGAACGCATCTTTTCCGGGAACGTCCTTTTTAGATACCAA GAACTCACCATAGAGGTATGCCCCTGTTCGCTAGTTGCATCACGTTTTTT TTAGGGTGGTTCTGTGTGCAACACGTTTAGAGATGCTTCAGATTCGATAG TCGCTTCGGCGCCGTCTCGTCTCGTTCTTGAGTCTCTTACACGTCGACTG AGTTCGATCTACATCGAAACGGGACATATATTTCACTCGGACCATTTCAC TGCCTATGTAGCACTATGCTTTGGACACTGCAACTCCGGATTGCCATAGC AACCGCTGCATAACATTCAAGAGCCATCCATAGCTCCTGACTTCGGTTAC TCAGTTTGTGCTCGCCATATGGAGAGAGGAGGTAGTTTTTTCTGAATGTT TTGTGTGCACTTGACACATAGCCGATTGACCTCAACGTGCTACTAATAGG GTTTTTTTTCGTCGGGGTCCAAGTTCGTCCCTCTTACACCCCGTCATCCG ATGACTGAATTTGACTCACTTACGTTCTCAAGCTTCCCCGCTACGGAAAC CAGAGTAAATGAAACCATTCTGGCAAGATTCGAACTCATGTGATCCGCAC CAATTATTAATAGTGAACTGCGACAGTTATCCACTATTCCACCACGAGGA TACAAGGCCGGGTCAGATTGCGCAGATGTCTTTGCACCATGATGACCAGA CGGATTATCAACCTTTCTACCGTTCCCTTTTTGTCTTCACCTTTTCAAGT TTTGTGCCGGATTCTGTCAAGGATCGGCTTATTTCGGGACCCAATACGGG CAGGAGGTAAGTCTGGTCGACTTTTAATGTGTGATCTACTGTAGCTTTAA GTGTAGCGTAAACGTAGATACCAACCCCGTAGTACGGCTTTAGGATTACT GTCATTGAGAGGTTGCGATAGCAGCGGCCTGAAGGAAAGGCTGGGGCTGA TAGAAGGTGGTATAGTTTCAGCTCCAGAACCTATATTCACTGCCAGAACA TCCCAGGGCGCCCTATAAAGCTTGTAAGAGTTTTGACTCGCACGTCTGTT CTCTGACGTCCATTGTTACGTGTTAACGTTTATTGTGCAGTGTTGGTGCG GAGAAGCGACGGACG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig900:6913..8127-

>mRNA_A-nodosum_M_contig900.1.1 ID=mRNA_A-nodosum_M_contig900.1.1|Name=mRNA_A-nodosum_M_contig900.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at A-nodosum_M_contig900:6913..8127- (Ascophyllum nodosum dioecious)
AACAATATCTATTATCTGCCATGCGGCGATCTCTGCGGCGAAGACGTGGA
AATACCCACTGAAGAAGAACCCGTCCTGTACACGTACCTCGGGTGCTACC
AGGACGAAACTGAACGCATCTTTTCCGGGAACGTCCTTTTTAGATACCAA
GAACTCACCATAGAGTTTTGTGCCGGATTCTGTCAAGGATCGGCTTATTT
CGGGACCCAATACGGGCAGGAGTGTTGGTGCGGAGAAGCGACGGAC
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