mRNA_A-nodosum_M_contig90.45.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig90.45.1
Unique NamemRNA_A-nodosum_M_contig90.45.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig90.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig90contigA-nodosum_M_contig90:658902..659356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size456
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870340.4758544-CDS-A-nodosum_M_contig90:658901..6592161680870340.4758544-CDS-A-nodosum_M_contig90:658901..659216Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig90 658902..659216 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870340.4869606-UTR-A-nodosum_M_contig90:659216..6593561680870340.4869606-UTR-A-nodosum_M_contig90:659216..659356Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig90 659217..659356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig90.45.1prot_A-nodosum_M_contig90.45.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig90 658902..659216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig90.45.1

>prot_A-nodosum_M_contig90.45.1 ID=prot_A-nodosum_M_contig90.45.1|Name=mRNA_A-nodosum_M_contig90.45.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=105bp
QELGLELGLGLDLELGVGLELRWRWRSTQVLRSAKRRLRSAVRPTSVPRR
GVQLSPATFPTARSCGQICWDLGTWSVTVTCRAENKGMCNGQVVRALDHT
VQYT*
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mRNA from alignment at A-nodosum_M_contig90:658902..659356+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig90.45.1 ID=mRNA_A-nodosum_M_contig90.45.1|Name=mRNA_A-nodosum_M_contig90.45.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=455bp|location=Sequence derived from alignment at A-nodosum_M_contig90:658902..659356+ (Ascophyllum nodosum dioecious)
CAGGAGCTGGGGCTAGAGCTGGGTCTGGGCCTGGACCTCGAGCTGGGAGT
GGGGCTGGAGCTGAGGTGGCGGTGGCGGTCGACTCAGGTCCTTCGCTCGG
CAAAGCGACGGCTGCGGAGTGCAGTGCGGCCGACCTCGGTCCCCCGCCGG
GGAGTGCAGTTGTCGCCCGCCACCTTTCCCACAGCTCGTTCATGTGGTCA
AATTTGTTGGGATCTTGGGACATGGTCTGTGACGGTGACATGCCGTGCGG
AAAACAAAGGGATGTGTAACGGGCAAGTCGTGAGGGCACTCGATCATACA
GTACAGTACACGTAGAGTACGAGAAGATTTATATACTTGGTCGAAAAAGT
GAAGAGCAAGAGGAGGAGTAATTAAAAAATTAAGTATTTATAGCAGGTTT
TGAGTTCACGCGCCCTGTTTTTGTAGCGGGTACGAGTAGCCCAGGAATGA
ACGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig90:658902..659356+

>mRNA_A-nodosum_M_contig90.45.1 ID=mRNA_A-nodosum_M_contig90.45.1|Name=mRNA_A-nodosum_M_contig90.45.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=315bp|location=Sequence derived from alignment at A-nodosum_M_contig90:658902..659356+ (Ascophyllum nodosum dioecious)
CAGGAGCTGGGGCTAGAGCTGGGTCTGGGCCTGGACCTCGAGCTGGGAGT
GGGGCTGGAGCTGAGGTGGCGGTGGCGGTCGACTCAGGTCCTTCGCTCGG
CAAAGCGACGGCTGCGGAGTGCAGTGCGGCCGACCTCGGTCCCCCGCCGG
GGAGTGCAGTTGTCGCCCGCCACCTTTCCCACAGCTCGTTCATGTGGTCA
AATTTGTTGGGATCTTGGGACATGGTCTGTGACGGTGACATGCCGTGCGG
AAAACAAAGGGATGTGTAACGGGCAAGTCGTGAGGGCACTCGATCATACA
GTACAGTACACGTAG
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