mRNA_A-nodosum_M_contig90.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig90.3.1
Unique NamemRNA_A-nodosum_M_contig90.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig90.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig90contigA-nodosum_M_contig90:72328..72791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size464
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870340.3839662-UTR-A-nodosum_M_contig90:72327..723661680870340.3839662-UTR-A-nodosum_M_contig90:72327..72366Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig90 72328..72366 +
1680870340.4091737-UTR-A-nodosum_M_contig90:72702..727911680870340.4091737-UTR-A-nodosum_M_contig90:72702..72791Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig90 72703..72791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870340.3991995-CDS-A-nodosum_M_contig90:72366..727021680870340.3991995-CDS-A-nodosum_M_contig90:72366..72702Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig90 72367..72702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig90.3.1prot_A-nodosum_M_contig90.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig90 72367..72702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig90.3.1

>prot_A-nodosum_M_contig90.3.1 ID=prot_A-nodosum_M_contig90.3.1|Name=mRNA_A-nodosum_M_contig90.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=112bp
MVVQLLLQGMKPTRFRDAMKQQLAWEDRDSDFPSKLMATMDAQLDTFEAA
EEILRVRIKHAVSDKPKDERQGKNVGRVGKETAGKRNESKSRVNDDGDVK
TFWGTCVVYGE*
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mRNA from alignment at A-nodosum_M_contig90:72328..72791+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig90.3.1 ID=mRNA_A-nodosum_M_contig90.3.1|Name=mRNA_A-nodosum_M_contig90.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=464bp|location=Sequence derived from alignment at A-nodosum_M_contig90:72328..72791+ (Ascophyllum nodosum dioecious)
CTGTGTCCTGGGGGGGCTTGAAAGAAGGGCGCTGGCAAGATGGTGGTGCA
GCTTCTACTACAAGGTATGAAACCGACGCGTTTTAGGGACGCGATGAAAC
AACAGCTGGCTTGGGAAGATAGGGATTCTGACTTTCCTAGCAAGTTAATG
GCAACCATGGATGCCCAACTGGATACGTTTGAGGCCGCGGAGGAAATTCT
ACGGGTTCGTATCAAACATGCGGTGTCTGATAAACCGAAGGACGAGAGAC
AGGGCAAAAACGTTGGACGAGTGGGGAAGGAGACGGCTGGTAAAAGAAAC
GAAAGCAAATCACGTGTGAATGATGACGGTGACGTGAAGACGTTTTGGGG
CACTTGTGTCGTGTATGGGGAGTAAGGCCATAAGAAATACAGCTGCCCAA
CTCGCAAGGAGAGTGACAAGAAGGCGATTACGCAGGCTCTGAGGTCAAGT
TCGGCCCTCGCCCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig90:72328..72791+

>mRNA_A-nodosum_M_contig90.3.1 ID=mRNA_A-nodosum_M_contig90.3.1|Name=mRNA_A-nodosum_M_contig90.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at A-nodosum_M_contig90:72328..72791+ (Ascophyllum nodosum dioecious)
ATGGTGGTGCAGCTTCTACTACAAGGTATGAAACCGACGCGTTTTAGGGA
CGCGATGAAACAACAGCTGGCTTGGGAAGATAGGGATTCTGACTTTCCTA
GCAAGTTAATGGCAACCATGGATGCCCAACTGGATACGTTTGAGGCCGCG
GAGGAAATTCTACGGGTTCGTATCAAACATGCGGTGTCTGATAAACCGAA
GGACGAGAGACAGGGCAAAAACGTTGGACGAGTGGGGAAGGAGACGGCTG
GTAAAAGAAACGAAAGCAAATCACGTGTGAATGATGACGGTGACGTGAAG
ACGTTTTGGGGCACTTGTGTCGTGTATGGGGAGTAA
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