mRNA_A-nodosum_M_contig9.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9.5.1
Unique NamemRNA_A-nodosum_M_contig9.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9contigA-nodosum_M_contig9:58966..59702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size260
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size132
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870331.4348047-UTR-A-nodosum_M_contig9:58965..590921680870331.4348047-UTR-A-nodosum_M_contig9:58965..59092Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9 58966..59092 -
1680870331.4824011-UTR-A-nodosum_M_contig9:59701..597021680870331.4824011-UTR-A-nodosum_M_contig9:59701..59702Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9 59702..59702 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870331.4449792-CDS-A-nodosum_M_contig9:59092..590971680870331.4449792-CDS-A-nodosum_M_contig9:59092..59097Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9 59093..59097 -
1680870331.455132-CDS-A-nodosum_M_contig9:59342..594101680870331.455132-CDS-A-nodosum_M_contig9:59342..59410Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9 59343..59410 -
1680870331.4705868-CDS-A-nodosum_M_contig9:59642..597011680870331.4705868-CDS-A-nodosum_M_contig9:59642..59701Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9 59643..59701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9.5.1prot_A-nodosum_M_contig9.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9 59093..59701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9.5.1

>prot_A-nodosum_M_contig9.5.1 ID=prot_A-nodosum_M_contig9.5.1|Name=mRNA_A-nodosum_M_contig9.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=44bp
MSLSWSIRLAWSEASRIVKSVSRNITKERPGSSWRHKQGWMMV*
back to top

mRNA from alignment at A-nodosum_M_contig9:58966..59702-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9.5.1 ID=mRNA_A-nodosum_M_contig9.5.1|Name=mRNA_A-nodosum_M_contig9.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=737bp|location=Sequence derived from alignment at A-nodosum_M_contig9:58966..59702- (Ascophyllum nodosum dioecious)
CATGTCCCTGTCTTGGTCTATCCGGCTCGCGTGGTCCGAAGCTTCCCGTA
TCGTAAAGAGGTAAGAAACCTCTCTGTGTAACTACTCAATTTGAGCAGGG
GGCTCGCACGACAGACTACTCTCTAAAGGCAGGCGGTGATCCGAACACCC
GATTCGAAATGGCAGAGACGATATATACCTTGACTGGCGAGTATCAACCA
GCATAGGTGTACAGAGTACAGTATGTTTTAAGCTTTGTCCTAGCTAGGTA
CATGTGCACCCCACCCCTGCTCTTCTACTTTTTCTAACGCAGTGTATCAA
GAAACATAACGAAGGAGCGCCCGGGGAGTAGCTGGCGACACAAACAAGGA
TGGATGATGGGTGGTAACGGTAATTTATTCCCATGCCAAGTTAGTTGCTC
AAAAGCTCGACTCTAGTCTATGTACTTCTTGACTACTTCGGTGCGAGGTA
CAACAACTACTACTACTACTACTACTACTACTACTACTACTACTACTGTA
CTACTAACCTACTGACTTACTTCACACACACCGACTGACTGACGTTTTGT
ACATCCATCTCTTCTGCTTATTGCTTATTATGGCATGATGGCATGATGGA
GCCAGTCTAAACAACATACCGGTACACAGGACGGAGCCGGTCGCCCTGGT
GGTTTTCAGTTGGTACTACAGTAAACTCGAAGCTTTCTGACGTTGGGTCG
TGAGTTGGAATCCCGGCGCAGTCATATGAAGTGGGAT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9:58966..59702-

>mRNA_A-nodosum_M_contig9.5.1 ID=mRNA_A-nodosum_M_contig9.5.1|Name=mRNA_A-nodosum_M_contig9.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=132bp|location=Sequence derived from alignment at A-nodosum_M_contig9:58966..59702- (Ascophyllum nodosum dioecious)
ATGTCCCTGTCTTGGTCTATCCGGCTCGCGTGGTCCGAAGCTTCCCGTAT
CGTAAAGAGTGTATCAAGAAACATAACGAAGGAGCGCCCGGGGAGTAGCT
GGCGACACAAACAAGGATGGATGATGGTCTAA
back to top