mRNA_A-nodosum_M_contig8989.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8989.3.1
Unique NamemRNA_A-nodosum_M_contig8989.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8989.3.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 9.450e-50
Identity = 108/234 (46.15%), Postives = 150/234 (64.10%), Query Frame = 3 
Query:  162 VTNPVSRVQLAVSKPLLADNGTVAGRNLERAIXXXXXXXRLRRDAHLGRMSWKGGLSMISVVIEDARGGQRDPNIGLTHNPSGLKIQLLGTIITVASPPNMMFKDGFHAGYSDDL-VNGLRHLRYNLNKLDVHLEQHARGGQESLLRVENMKEKRLALSQVGAIMDEEDFQFISALGGAWLGLSHTPKIKADSSVWWEGSKTPFVSIRLLVRRARLSS---VRVEEDAAYAEMA 851
            V+N V RV+L+ SKPLLA++G  +G  LERA+           D  L +M W GGL M++ VI+DA GG+  P+I LT +PSG+ I+ LG  + +A+PP     DGF A     + VN +R LR ++  LD H+++HARGG E L  V+N+K+KR  L QVGAI+++E F+++ ALGG W+ + H P  K  S VW  GS TP +  R+L+RRARL+    + VEEDA YAE A
Sbjct: 2781 VSNRVRRVKLSCSKPLLANDGKTSGAKLERAVCS---------DPRLVKMRWDGGLVMVTAVIKDAVGGKAIPHIDLTQSPSGMTIEALGVKVRIAAPPEAKNMDGFSAACGGAVGVNSMRRLRGHVQNLDGHIDEHARGGDEGLRWVDNLKQKRTVLRQVGAILEDE-FRYLPALGGLWMRVRHLPSAKTASDVWNTGSATPTIEYRVLMRRARLADEGGLTVEEDAGYAEAA 3004
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BLAST of mRNA_A-nodosum_M_contig8989.3.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 1.220e-49
Identity = 106/234 (45.30%), Postives = 150/234 (64.10%), Query Frame = 3 
Query:  162 VTNPVSRVQLAVSKPLLADNGTVAGRNLERAIXXXXXXXRLRRDAHLGRMSWKGGLSMISVVIEDARGGQRDPNIGLTHNPSGLKIQLLGTIITVASPPNMMFKDGFHAGYSDDL-VNGLRHLRYNLNKLDVHLEQHARGGQESLLRVENMKEKRLALSQVGAIMDEEDFQFISALGGAWLGLSHTPKIKADSSVWWEGSKTPFVSIRLLVRRARLSS---VRVEEDAAYAEMA 851
            V N V RV+L++SKPLLA++G  +G  LERA+           D  L +M W GGL M++ V++DA+GG+  P+I LT +PSG+ ++ LG  I +A+PP     DGF A     + VN +R LR  L KLD H+++HARGG E L  V+N+ +KR  L QVGAI+++E F+++ ALGG W+ + H P  K+ S VW  GS TP +  R+L+RRA L+    + VEED+ YAE A
Sbjct: 2055 VPNRVRRVKLSLSKPLLANDGKTSGAKLERAVCS---------DPRLVKMQWDGGLVMVTAVVKDAKGGKAIPDIDLTQSPSGMTMEALGVKIRIAAPPEAKNNDGFSAACGGAVGVNSMRRLRGQLQKLDGHIDEHARGGDEGLRWVDNLNQKRTVLRQVGAILEDE-FRYLPALGGLWMRVRHLPSAKSGSGVWNTGSATPTIEFRVLMRRALLADEGGLTVEEDSGYAEAA 2278
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8989.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNI2_9PHAE9.450e-5046.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWI3_ECTSI1.220e-4945.30Global transcription factor group n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8989contigA-nodosum_M_contig8989:8776..10236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1461
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionBromodomain protein
Ec32 orthologEc-26_006510.1
Cds size774
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870331.0895271-UTR-A-nodosum_M_contig8989:8775..90831680870331.0895271-UTR-A-nodosum_M_contig8989:8775..9083Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8989 8776..9083 +
1680870331.1130958-UTR-A-nodosum_M_contig8989:9857..102361680870331.1130958-UTR-A-nodosum_M_contig8989:9857..10236Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8989 9858..10236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870331.1027086-CDS-A-nodosum_M_contig8989:9083..98571680870331.1027086-CDS-A-nodosum_M_contig8989:9083..9857Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8989 9084..9857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8989.3.1prot_A-nodosum_M_contig8989.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8989 9084..9857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8989.3.1

>prot_A-nodosum_M_contig8989.3.1 ID=prot_A-nodosum_M_contig8989.3.1|Name=mRNA_A-nodosum_M_contig8989.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=258bp
MSWKGGLSMISVVIEDARGGQRDPNIGLTHNPSGLKIQLLGTIITVASPP
NMMFKDGFHAGYSDDLVNGLRHLRYNLNKLDVHLEQHARGGQESLLRVEN
MKEKRLALSQVGAIMDEEDFQFISALGGAWLGLSHTPKIKADSSVWWEGS
KTPFVSIRLLVRRARLSSVRVEEDAAYAEMAAAASAAEMAAAASAAEMIA
AASAAEAAAEVVETIAGEGNTPSGSFVWGEEQRRQAARLFESLPLAPTAR
MFSLLDD*
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mRNA from alignment at A-nodosum_M_contig8989:8776..10236+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8989.3.1 ID=mRNA_A-nodosum_M_contig8989.3.1|Name=mRNA_A-nodosum_M_contig8989.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1461bp|location=Sequence derived from alignment at A-nodosum_M_contig8989:8776..10236+ (Ascophyllum nodosum dioecious)
CCGCTCCCGCCGGAATCATCGACGCCGCAGGAGAGTTAGCAAAGGGTGTA
TTTTCTGGCAGCTCCAGACCAAACGGTGAAGGGACGAGAAGCAAGGCCGT
GCTCTTCACCCACGCTCCGGGCGTCGGGTCGGCTCCAGCGGTACAAAGCG
CAAGCGTAACCGTAACGAACCCGGTTTCGCGAGTGCAGCTGGCTGTTTCG
AAACCTCTTCTTGCAGACAATGGCACTGTCGCCGGCCGCAATCTAGAGCG
GGCCATCCGCAATCAAGAGCGGGCCATCCGCCTCCGTCGCGACGCGCACC
TAGGTAGAATGAGCTGGAAAGGTGGCCTGTCTATGATCAGCGTAGTTATC
GAGGACGCGAGAGGGGGCCAGCGGGATCCGAATATCGGCTTGACCCACAA
TCCGTCGGGACTGAAAATCCAGTTGCTGGGGACCATAATTACTGTTGCGT
CTCCCCCAAACATGATGTTCAAGGATGGATTTCACGCGGGCTACTCAGAC
GACCTTGTCAATGGCCTCCGGCATCTAAGGTACAATTTGAATAAGCTCGA
CGTCCATTTGGAGCAGCACGCCAGGGGTGGCCAAGAAAGCCTCTTGCGGG
TGGAAAACATGAAAGAGAAGCGCCTCGCGCTGTCTCAAGTGGGAGCCATT
ATGGACGAGGAAGACTTTCAATTTATTTCAGCTCTCGGTGGGGCATGGCT
GGGGCTTTCCCACACCCCGAAAATAAAGGCTGATTCGAGCGTCTGGTGGG
AGGGTTCGAAGACCCCTTTCGTGAGTATCCGCCTCTTAGTACGGCGTGCG
CGCCTTTCGTCAGTTAGGGTGGAAGAGGACGCAGCCTACGCTGAGATGGC
TGCTGCTGCGAGCGCAGCTGAGATGGCTGCTGCTGCGAGCGCAGCTGAAA
TGATTGCTGCTGCGAGCGCAGCTGAGGCGGCGGCTGAGGTTGTGGAAACC
ATTGCTGGAGAGGGAAACACGCCGAGTGGTTCGTTCGTGTGGGGGGAAGA
ACAGAGGAGGCAAGCAGCCCGACTGTTCGAAAGCTTGCCTCTGGCGCCCA
CCGCGCGCATGTTCTCGCTTTTGGACGACTGAGTCTCGGATTTGGATCCG
AATGTCGTCTGATAGTATAGTAAGTGACGTCTGTACAGTATAGGCTCTAT
GTAACTTGAGCGTGGAGTGTGGAGTGTGTGTTGATTTATTACGGGTGCCT
GTAGCTAGAGGTTCACAACGGCCTCGCGCGAAACGAGCAGAGACGTTGGT
AGATGATACGACTGTTGGTTGACGATCTAGCAGAGAGAGGATTTTTGCTG
AAGACTTGGTCATCCTTCGGCCGCATCTCTTATGTATTTTATTGGGAGGC
TTTTGTCAAATTTGAAATCACGCTGATGTCATAGTTTATAAGGTTTTATC
ATCGCTCAAAAGCTATTCGAGATCGATCATGTTAATACAAGTACAGTATG
AATAAAATGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8989:8776..10236+

>mRNA_A-nodosum_M_contig8989.3.1 ID=mRNA_A-nodosum_M_contig8989.3.1|Name=mRNA_A-nodosum_M_contig8989.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at A-nodosum_M_contig8989:8776..10236+ (Ascophyllum nodosum dioecious)
ATGAGCTGGAAAGGTGGCCTGTCTATGATCAGCGTAGTTATCGAGGACGC
GAGAGGGGGCCAGCGGGATCCGAATATCGGCTTGACCCACAATCCGTCGG
GACTGAAAATCCAGTTGCTGGGGACCATAATTACTGTTGCGTCTCCCCCA
AACATGATGTTCAAGGATGGATTTCACGCGGGCTACTCAGACGACCTTGT
CAATGGCCTCCGGCATCTAAGGTACAATTTGAATAAGCTCGACGTCCATT
TGGAGCAGCACGCCAGGGGTGGCCAAGAAAGCCTCTTGCGGGTGGAAAAC
ATGAAAGAGAAGCGCCTCGCGCTGTCTCAAGTGGGAGCCATTATGGACGA
GGAAGACTTTCAATTTATTTCAGCTCTCGGTGGGGCATGGCTGGGGCTTT
CCCACACCCCGAAAATAAAGGCTGATTCGAGCGTCTGGTGGGAGGGTTCG
AAGACCCCTTTCGTGAGTATCCGCCTCTTAGTACGGCGTGCGCGCCTTTC
GTCAGTTAGGGTGGAAGAGGACGCAGCCTACGCTGAGATGGCTGCTGCTG
CGAGCGCAGCTGAGATGGCTGCTGCTGCGAGCGCAGCTGAAATGATTGCT
GCTGCGAGCGCAGCTGAGGCGGCGGCTGAGGTTGTGGAAACCATTGCTGG
AGAGGGAAACACGCCGAGTGGTTCGTTCGTGTGGGGGGAAGAACAGAGGA
GGCAAGCAGCCCGACTGTTCGAAAGCTTGCCTCTGGCGCCCACCGCGCGC
ATGTTCTCGCTTTTGGACGACTGA
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