mRNA_A-nodosum_M_contig898.2.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: D8LDH7_ECTSI (YihA6, YihA/EngB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH7_ECTSI) HSP 1 Score: 182 bits (462), Expect = 2.380e-51 Identity = 93/109 (85.32%), Postives = 98/109 (89.91%), Query Frame = 3
Query: 3 TTLPEIAFLGRSNVGKSSMLNTLFGESVAKVSKTPGRTRHINIFKAKNSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSDAG 329
T LPEIAFLGRSNVGKSSMLNTLFGE VAKVSKTPGRTR INIFKAKN KDVC FADLPGYGYAK+ K++QRTIE FL MYLERRSNLKLLILL D+RREPL+SDAG
Sbjct: 280 TNLPEIAFLGRSNVGKSSMLNTLFGEPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAG 388
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A836CAC1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC1_9STRA) HSP 1 Score: 140 bits (353), Expect = 7.520e-38 Identity = 76/112 (67.86%), Postives = 86/112 (76.79%), Query Frame = 3
Query: 9 LPEIAFLGRSNVGKSSMLNTLFGESVAKV----SKTPGRTRHINIFKAKNSKG--KDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSDA 326
+PE+AFLGRSNVGKSSMLN LFGE AKV SKTPGRT+ INIF A+ G +++C FADLPGYGYAK+ KE R IE FL YLERR+ LKLLILL DARR+ L SDA
Sbjct: 19 VPEVAFLGRSNVGKSSMLNCLFGERAAKVRFVVSKTPGRTQLINIFSARGGAGGARELCRFADLPGYGYAKLAKEDMRAIEGFLMQYLERRAQLKLLILLVDARRDALDSDA 130
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A7R9YE62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE62_9STRA) HSP 1 Score: 122 bits (307), Expect = 2.010e-31 Identity = 63/104 (60.58%), Postives = 77/104 (74.04%), Query Frame = 3
Query: 3 TTLPEIAFLGRSNVGKSSMLNTLFG--ESVAKVSKTPGRTRHINIFKAKNSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARRE 308
T +PE+AF+GRSNVGKSS LN L G ++VA VSKTPGRTR IN+F+ N GK +C FADLPGYGYAK+ K +QRTI L Y E R L+L +LL D+RR+
Sbjct: 65 TEVPEVAFIGRSNVGKSSFLNALEGGNKAVAIVSKTPGRTRQINLFQVANKAGKPLCVFADLPGYGYAKLAKGRQRTISRSLRRYFEGRRQLQLAVLLGDSRRD 168
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A482SYH7_9ARCH (Ribosome biogenesis GTP-binding protein YsxC (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYH7_9ARCH) HSP 1 Score: 119 bits (299), Expect = 2.340e-29 Identity = 62/107 (57.94%), Postives = 79/107 (73.83%), Query Frame = 3
Query: 9 LPEIAFLGRSNVGKSSMLNTLFGES--VAKVSKTPGRTRHINIFKAKNSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSD 323
+PE+AF+GRSNVGKSS+LN + G S +A SK PGRT+ IN+FK K+ G D+C F DLPGYG+AK+GKEQQR I TF+ YL R+ LKL +++ DARR SD
Sbjct: 129 IPEVAFVGRSNVGKSSLLNCISGASKNIAVESKIPGRTQCINLFKCKDMSG-DICIFTDLPGYGFAKLGKEQQRDISTFVNKYLVGRAALKLTVVIVDARRGQQESD 234
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A6T6M3C3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6M3C3_9RHOD) HSP 1 Score: 120 bits (300), Expect = 8.070e-29 Identity = 61/109 (55.96%), Postives = 79/109 (72.48%), Query Frame = 3
Query: 3 TTLPEIAFLGRSNVGKSSMLNTLFG--ESVAKVSKTPGRTRHINIFKAKNSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSD 323
T +PEIAF+GRSNVGKSS +N L G + VAK SK PGRT+ IN F +++ +D+ DLPGYG+AKIG E QR++E FLE YL R LKL+ +L D+RREP ++D
Sbjct: 138 TRVPEIAFIGRSNVGKSSTINCLTGLKKKVAKTSKQPGRTQQINFFILSDAEEQDLATLVDLPGYGFAKIGMEDQRSVEVFLERYLSDREELKLVAILIDSRREPQATD 246
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: UPI000D69A2CF (ribosome biogenesis GTP-binding protein YihA/YsxC n=1 Tax=Occallatibacter savannae TaxID=1002691 RepID=UPI000D69A2CF) HSP 1 Score: 114 bits (284), Expect = 1.030e-27 Identity = 60/106 (56.60%), Postives = 69/106 (65.09%), Query Frame = 3
Query: 6 TLPEIAFLGRSNVGKSSMLNTLFGESVAKVSKTPGRTRHINIFKAKNSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSD 323
++PEIAFLGRSNVGKSS+LN L GE AKVS TPGRTR IN F+ + KG+ ADLPGYGYAKI K F+E YL R LKL + L D+ P SD
Sbjct: 21 SVPEIAFLGRSNVGKSSLLNALVGEKAAKVSSTPGRTRAINFFQLVDDKGRPQVVLADLPGYGYAKISKSISAEWPKFIEPYLAERETLKLCVCLVDSNIPPQQSD 126
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A7S2DD64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DD64_9STRA) HSP 1 Score: 113 bits (282), Expect = 3.670e-27 Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 3
Query: 9 LPEIAFLGRSNVGKSSMLNTLFG--ESVAKVSKTPGRTRHINIFKAKNSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSDA 326
LPEIAF+GRSNVGKSS+LN L G A VSKTPGRTR INIF+ ++ +G +C DLPGYG+A+I +E +++I +F++ YL RS L+L +LL D+RR + SDA
Sbjct: 92 LPEIAFVGRSNVGKSSLLNCLAGPGRKPAVVSKTPGRTRRINIFRVRDDQGP-LCALVDLPGYGFAQITEEVRKSIGSFMDQYLATRSELQLAVLLIDSRRGVMDSDA 198
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A2V9SWC9_9BACT (Probable GTP-binding protein EngB n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9SWC9_9BACT) HSP 1 Score: 112 bits (279), Expect = 7.180e-27 Identity = 76/207 (36.71%), Postives = 107/207 (51.69%), Query Frame = 3
Query: 6 TLPEIAFLGRSNVGKSSMLNTLFGESVAKVSKTPGRTRHINIFKAK-NSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSDAGSYLLRCSLQLYISRAGRASV*RGTHGP*ICPNVKSSSCLTGNGCSENLGRSSRRCRMLEAVTYGTLTGTNSGCGKERRISIGLW*PAKAALVRNYLEV 623
+LPE+AFLGRSNVGKSS++N+L G +A+ S TPGRTR IN F+ + K + F DLPGYGYA++ +E F+E YL R +L L + L D P +SD L +++ +GR ++ GT S L+GN +L R S+ + Y TG G+E LW +AA V +Y E+
Sbjct: 21 SLPEVAFLGRSNVGKSSVINSLLGSKIARTSSTPGRTRSINFFEVRWPGKPRPELVFTDLPGYGYARVPQEMSGQWPGFIEPYLRERPSLVLSLALIDINVPPQASDR-------QLLEFLNHSGRPALIVGT----------KSDRLSGNQLRNSLERISQEYMGTRVIPYSARTGA----GREE-----LWQKIRAA-VESYREL 200
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A2V9V965_9BACT (Probable GTP-binding protein EngB n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9V965_9BACT) HSP 1 Score: 110 bits (276), Expect = 1.950e-26 Identity = 77/201 (38.31%), Postives = 103/201 (51.24%), Query Frame = 3
Query: 9 LPEIAFLGRSNVGKSSMLNTLFGESVAKVSKTPGRTRHINIFKAK-NSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSDAGSYLLRCSLQLYISRAGRASV*RGTHGP*ICPNVKSSSCLTGNGCSENLGRSSRRCRMLEAVTYGTLTGTNSGCGKERRISIGLW*PAKAALVR 608
LPEIAFLGRSNVGKSS++N+L G +A+ S TPGRTR IN F+ + K K F DLPGYGYA++ +E + TF+E YL+ RS L L ++L D P SD L +++ +GR P + KS L+GN +++ +R V Y TG G+E LW K A R
Sbjct: 22 LPEIAFLGRSNVGKSSVINSLVGTKLARTSSTPGRTRSINFFEVRWPGKPKPELVFTDLPGYGYARLSREVVQEWPTFIEPYLKERSCLALCLVLVDVNVPPQQSDR-------QLLEFLTASGR---------PFVIVATKSDR-LSGNQLQKSMQDLAREYEEARIVPYSAKTGA----GREE-----LWREIKLAAER 196
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A2V9YIL7_9BACT (Probable GTP-binding protein EngB n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9YIL7_9BACT) HSP 1 Score: 110 bits (276), Expect = 1.950e-26 Identity = 69/177 (38.98%), Postives = 98/177 (55.37%), Query Frame = 3
Query: 6 TLPEIAFLGRSNVGKSSMLNTLFGESVAKVSKTPGRTRHINIFKAK-NSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSDAGSYLLRCSLQLYISRAGRASV*RGTHGP*ICPNVKSSSCLTGNGCSENLGRSSRRCRMLEAVTYGTLTG 533
TLPEIAFLGRSNVGKSS++N+L G +A+ S TPGRTR +N ++ + K K FADLPGYGYA++ +E + +F+E YL+ R L L ++L DA P SD C L +++ AGR V T S L+GN +++ + + + + Y TG
Sbjct: 21 TLPEIAFLGRSNVGKSSVINSLVGTKLARTSSTPGRTRSVNFYEVRWPGKPKADLIFADLPGYGYARLAREVVQQWPSFIEPYLKDRPCLTLCVVLIDANIPPQPSD-------CQLLEFLAAAGRLFVLIAT----------KSDRLSGNQLQKSMHDLANQYQGARILAYSAKTG 180 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig898.2.1 >prot_A-nodosum_M_contig898.2.1 ID=prot_A-nodosum_M_contig898.2.1|Name=mRNA_A-nodosum_M_contig898.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=121bp MLGGSLCLPTRGPTCCAAPYSCISLELAELAFEGARMVRRFAQTLNRALVback to top mRNA from alignment at A-nodosum_M_contig898:3811..5655- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig898.2.1 ID=mRNA_A-nodosum_M_contig898.2.1|Name=mRNA_A-nodosum_M_contig898.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1845bp|location=Sequence derived from alignment at A-nodosum_M_contig898:3811..5655- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig898:3811..5655- >mRNA_A-nodosum_M_contig898.2.1 ID=mRNA_A-nodosum_M_contig898.2.1|Name=mRNA_A-nodosum_M_contig898.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=363bp|location=Sequence derived from alignment at A-nodosum_M_contig898:3811..5655- (Ascophyllum nodosum dioecious)back to top |