mRNA_A-nodosum_M_contig898.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig898.2.1
Unique NamemRNA_A-nodosum_M_contig898.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: D8LDH7_ECTSI (YihA6, YihA/EngB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH7_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 2.380e-51
Identity = 93/109 (85.32%), Postives = 98/109 (89.91%), Query Frame = 3
Query:    3 TTLPEIAFLGRSNVGKSSMLNTLFGESVAKVSKTPGRTRHINIFKAKNSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSDAG 329
            T LPEIAFLGRSNVGKSSMLNTLFGE VAKVSKTPGRTR INIFKAKN   KDVC FADLPGYGYAK+ K++QRTIE FL MYLERRSNLKLLILL D+RREPL+SDAG
Sbjct:  280 TNLPEIAFLGRSNVGKSSMLNTLFGEPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAG 388          
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A836CAC1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC1_9STRA)

HSP 1 Score: 140 bits (353), Expect = 7.520e-38
Identity = 76/112 (67.86%), Postives = 86/112 (76.79%), Query Frame = 3
Query:    9 LPEIAFLGRSNVGKSSMLNTLFGESVAKV----SKTPGRTRHINIFKAKNSKG--KDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSDA 326
            +PE+AFLGRSNVGKSSMLN LFGE  AKV    SKTPGRT+ INIF A+   G  +++C FADLPGYGYAK+ KE  R IE FL  YLERR+ LKLLILL DARR+ L SDA
Sbjct:   19 VPEVAFLGRSNVGKSSMLNCLFGERAAKVRFVVSKTPGRTQLINIFSARGGAGGARELCRFADLPGYGYAKLAKEDMRAIEGFLMQYLERRAQLKLLILLVDARRDALDSDA 130          
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A7R9YE62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE62_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.010e-31
Identity = 63/104 (60.58%), Postives = 77/104 (74.04%), Query Frame = 3
Query:    3 TTLPEIAFLGRSNVGKSSMLNTLFG--ESVAKVSKTPGRTRHINIFKAKNSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARRE 308
            T +PE+AF+GRSNVGKSS LN L G  ++VA VSKTPGRTR IN+F+  N  GK +C FADLPGYGYAK+ K +QRTI   L  Y E R  L+L +LL D+RR+
Sbjct:   65 TEVPEVAFIGRSNVGKSSFLNALEGGNKAVAIVSKTPGRTRQINLFQVANKAGKPLCVFADLPGYGYAKLAKGRQRTISRSLRRYFEGRRQLQLAVLLGDSRRD 168          
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A482SYH7_9ARCH (Ribosome biogenesis GTP-binding protein YsxC (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYH7_9ARCH)

HSP 1 Score: 119 bits (299), Expect = 2.340e-29
Identity = 62/107 (57.94%), Postives = 79/107 (73.83%), Query Frame = 3
Query:    9 LPEIAFLGRSNVGKSSMLNTLFGES--VAKVSKTPGRTRHINIFKAKNSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSD 323
            +PE+AF+GRSNVGKSS+LN + G S  +A  SK PGRT+ IN+FK K+  G D+C F DLPGYG+AK+GKEQQR I TF+  YL  R+ LKL +++ DARR    SD
Sbjct:  129 IPEVAFVGRSNVGKSSLLNCISGASKNIAVESKIPGRTQCINLFKCKDMSG-DICIFTDLPGYGFAKLGKEQQRDISTFVNKYLVGRAALKLTVVIVDARRGQQESD 234          
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A6T6M3C3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6M3C3_9RHOD)

HSP 1 Score: 120 bits (300), Expect = 8.070e-29
Identity = 61/109 (55.96%), Postives = 79/109 (72.48%), Query Frame = 3
Query:    3 TTLPEIAFLGRSNVGKSSMLNTLFG--ESVAKVSKTPGRTRHINIFKAKNSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSD 323
            T +PEIAF+GRSNVGKSS +N L G  + VAK SK PGRT+ IN F   +++ +D+    DLPGYG+AKIG E QR++E FLE YL  R  LKL+ +L D+RREP ++D
Sbjct:  138 TRVPEIAFIGRSNVGKSSTINCLTGLKKKVAKTSKQPGRTQQINFFILSDAEEQDLATLVDLPGYGFAKIGMEDQRSVEVFLERYLSDREELKLVAILIDSRREPQATD 246          
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: UPI000D69A2CF (ribosome biogenesis GTP-binding protein YihA/YsxC n=1 Tax=Occallatibacter savannae TaxID=1002691 RepID=UPI000D69A2CF)

HSP 1 Score: 114 bits (284), Expect = 1.030e-27
Identity = 60/106 (56.60%), Postives = 69/106 (65.09%), Query Frame = 3
Query:    6 TLPEIAFLGRSNVGKSSMLNTLFGESVAKVSKTPGRTRHINIFKAKNSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSD 323
            ++PEIAFLGRSNVGKSS+LN L GE  AKVS TPGRTR IN F+  + KG+     ADLPGYGYAKI K        F+E YL  R  LKL + L D+   P  SD
Sbjct:   21 SVPEIAFLGRSNVGKSSLLNALVGEKAAKVSSTPGRTRAINFFQLVDDKGRPQVVLADLPGYGYAKISKSISAEWPKFIEPYLAERETLKLCVCLVDSNIPPQQSD 126          
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A7S2DD64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DD64_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.670e-27
Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 3
Query:    9 LPEIAFLGRSNVGKSSMLNTLFG--ESVAKVSKTPGRTRHINIFKAKNSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSDA 326
            LPEIAF+GRSNVGKSS+LN L G     A VSKTPGRTR INIF+ ++ +G  +C   DLPGYG+A+I +E +++I +F++ YL  RS L+L +LL D+RR  + SDA
Sbjct:   92 LPEIAFVGRSNVGKSSLLNCLAGPGRKPAVVSKTPGRTRRINIFRVRDDQGP-LCALVDLPGYGFAQITEEVRKSIGSFMDQYLATRSELQLAVLLIDSRRGVMDSDA 198          
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A2V9SWC9_9BACT (Probable GTP-binding protein EngB n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9SWC9_9BACT)

HSP 1 Score: 112 bits (279), Expect = 7.180e-27
Identity = 76/207 (36.71%), Postives = 107/207 (51.69%), Query Frame = 3
Query:    6 TLPEIAFLGRSNVGKSSMLNTLFGESVAKVSKTPGRTRHINIFKAK-NSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSDAGSYLLRCSLQLYISRAGRASV*RGTHGP*ICPNVKSSSCLTGNGCSENLGRSSRRCRMLEAVTYGTLTGTNSGCGKERRISIGLW*PAKAALVRNYLEV 623
            +LPE+AFLGRSNVGKSS++N+L G  +A+ S TPGRTR IN F+ +   K +    F DLPGYGYA++ +E       F+E YL  R +L L + L D    P +SD         L  +++ +GR ++  GT           S  L+GN    +L R S+       + Y   TG     G+E      LW   +AA V +Y E+
Sbjct:   21 SLPEVAFLGRSNVGKSSVINSLLGSKIARTSSTPGRTRSINFFEVRWPGKPRPELVFTDLPGYGYARVPQEMSGQWPGFIEPYLRERPSLVLSLALIDINVPPQASDR-------QLLEFLNHSGRPALIVGT----------KSDRLSGNQLRNSLERISQEYMGTRVIPYSARTGA----GREE-----LWQKIRAA-VESYREL 200          
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A2V9V965_9BACT (Probable GTP-binding protein EngB n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9V965_9BACT)

HSP 1 Score: 110 bits (276), Expect = 1.950e-26
Identity = 77/201 (38.31%), Postives = 103/201 (51.24%), Query Frame = 3
Query:    9 LPEIAFLGRSNVGKSSMLNTLFGESVAKVSKTPGRTRHINIFKAK-NSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSDAGSYLLRCSLQLYISRAGRASV*RGTHGP*ICPNVKSSSCLTGNGCSENLGRSSRRCRMLEAVTYGTLTGTNSGCGKERRISIGLW*PAKAALVR 608
            LPEIAFLGRSNVGKSS++N+L G  +A+ S TPGRTR IN F+ +   K K    F DLPGYGYA++ +E  +   TF+E YL+ RS L L ++L D    P  SD         L  +++ +GR         P +    KS   L+GN   +++   +R       V Y   TG     G+E      LW   K A  R
Sbjct:   22 LPEIAFLGRSNVGKSSVINSLVGTKLARTSSTPGRTRSINFFEVRWPGKPKPELVFTDLPGYGYARLSREVVQEWPTFIEPYLKERSCLALCLVLVDVNVPPQQSDR-------QLLEFLTASGR---------PFVIVATKSDR-LSGNQLQKSMQDLAREYEEARIVPYSAKTGA----GREE-----LWREIKLAAER 196          
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Match: A0A2V9YIL7_9BACT (Probable GTP-binding protein EngB n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9YIL7_9BACT)

HSP 1 Score: 110 bits (276), Expect = 1.950e-26
Identity = 69/177 (38.98%), Postives = 98/177 (55.37%), Query Frame = 3
Query:    6 TLPEIAFLGRSNVGKSSMLNTLFGESVAKVSKTPGRTRHINIFKAK-NSKGKDVCCFADLPGYGYAKIGKEQQRTIETFLEMYLERRSNLKLLILLTDARREPLSSDAGSYLLRCSLQLYISRAGRASV*RGTHGP*ICPNVKSSSCLTGNGCSENLGRSSRRCRMLEAVTYGTLTG 533
            TLPEIAFLGRSNVGKSS++N+L G  +A+ S TPGRTR +N ++ +   K K    FADLPGYGYA++ +E  +   +F+E YL+ R  L L ++L DA   P  SD       C L  +++ AGR  V   T           S  L+GN   +++   + + +    + Y   TG
Sbjct:   21 TLPEIAFLGRSNVGKSSVINSLVGTKLARTSSTPGRTRSVNFYEVRWPGKPKADLIFADLPGYGYARLAREVVQQWPSFIEPYLKDRPCLTLCVVLIDANIPPQPSD-------CQLLEFLAAAGRLFVLIAT----------KSDRLSGNQLQKSMHDLANQYQGARILAYSAKTG 180          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig898.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDH7_ECTSI2.380e-5185.32YihA6, YihA/EngB-like GTPase n=1 Tax=Ectocarpus si... [more]
A0A836CAC1_9STRA7.520e-3867.86P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7R9YE62_9STRA2.010e-3160.58Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A482SYH7_9ARCH2.340e-2957.94Ribosome biogenesis GTP-binding protein YsxC (Frag... [more]
A0A6T6M3C3_9RHOD8.070e-2955.96Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
UPI000D69A2CF1.030e-2756.60ribosome biogenesis GTP-binding protein YihA/YsxC ... [more]
A0A7S2DD64_9STRA3.670e-2755.56Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A2V9SWC9_9BACT7.180e-2736.71Probable GTP-binding protein EngB n=1 Tax=Acidobac... [more]
A0A2V9V965_9BACT1.950e-2638.31Probable GTP-binding protein EngB n=1 Tax=Acidobac... [more]
A0A2V9YIL7_9BACT1.950e-2638.98Probable GTP-binding protein EngB n=1 Tax=Acidobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig898contigA-nodosum_M_contig898:3811..5655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size725
Hectar predicted targeting categoryother localisation
Exons4
Cds size363
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig898.2.1prot_A-nodosum_M_contig898.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig898 3879..4421 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870330.1375885-UTR-A-nodosum_M_contig898:3810..38781680870330.1375885-UTR-A-nodosum_M_contig898:3810..3878Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig898 3811..3878 -
1680870330.1762009-UTR-A-nodosum_M_contig898:4421..44821680870330.1762009-UTR-A-nodosum_M_contig898:4421..4482Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig898 4422..4482 -
1680870330.1905825-UTR-A-nodosum_M_contig898:4685..47811680870330.1905825-UTR-A-nodosum_M_contig898:4685..4781Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig898 4686..4781 -
1680870330.2051833-UTR-A-nodosum_M_contig898:5518..56551680870330.2051833-UTR-A-nodosum_M_contig898:5518..5655Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig898 5519..5655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870330.1512187-CDS-A-nodosum_M_contig898:3878..42081680870330.1512187-CDS-A-nodosum_M_contig898:3878..4208Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig898 3879..4208 -
1680870330.1620202-CDS-A-nodosum_M_contig898:4388..44211680870330.1620202-CDS-A-nodosum_M_contig898:4388..4421Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig898 4389..4421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig898.2.1

>prot_A-nodosum_M_contig898.2.1 ID=prot_A-nodosum_M_contig898.2.1|Name=mRNA_A-nodosum_M_contig898.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=121bp
MLGGSLCLPTRGPTCCAAPYSCISLELAELAFEGARMVRRFAQTLNRALV
SQAMGVRRIWGGHRVGVECWRLLRTAPSPVPIVGVGKRGAYQLVYGDLPR
QHSFGTTLRFTGPVPADSRQ*
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mRNA from alignment at A-nodosum_M_contig898:3811..5655-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig898.2.1 ID=mRNA_A-nodosum_M_contig898.2.1|Name=mRNA_A-nodosum_M_contig898.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1845bp|location=Sequence derived from alignment at A-nodosum_M_contig898:3811..5655- (Ascophyllum nodosum dioecious)
AGACAACACTTCCAGAGATAGCCTTCCTCGGTCGATCGAACGTTGGGAAG AGCAGCATGCTCAACACCCTTTTCGGCGAGTCGGTGGCAAAAGTTTCTAA AACTCCTGGACGAACACGCCACATCAACATCTTCAAGGTGATTAATAAAC CGTGCTGCGCGCTATCGGCACTACGACAAACCACTCACTGCATTTGCGAC GAGGAGCGATGCCTCTGAGCAATGATCCCTGCGCGGTAGTAGCTCCAAGG CAAGATCAATCCCGAAAATCAAACGGCTACGTCGCAGAACACTAGTGCTT GACTAATGAACAGTTAGCCTCCGAAAATGATTGCAGCTCTAGAGCTATGT CGAGCTATGTCGAGCTATGTCTTAACTCGTGGATAGAAATTAACGGGAAA ATAAAATATTTGGTACACGTCGATCACGGGATTCCCGCGAGTAAGCACCA GATTCACCCTGAATATGGAGATGAGCAGGCTGACGCGGGACGGGACGGCT GAACCCGTCTCGCGAGACCAAACTCTCAGGCACGTACGGGGACAGGGGAA TAATCATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACTTTACC CGGTTGATCCATGCTCTGCTATATGTGATGACCATACATACATACATAAG TCGAGGGTATTGGTGGCCAACTCCTGTTTTCCGTCGAGATGACAGGAATC GAGTAAGTTGCTCTAACTGCTGGAAGGATGTACACCCTCAAGAATTTGCC ATGGTCGTCGTTTCCATCAACTGCTCCGGAAACGTAACGCTCCGTCCTCC CCCCACCGGTATCTATCCTACGACACCTTTTCGTTGCCTCGCTATGAACC ATTTTTGCCTGTATTCTGTCACAGGCCAAGAACAGCAAGGGAAAGGACGT GTGCTGCTTTGCCGACCTCCCCGGTTATGGCTACGCGAAGATAGGGAAGG AGCAGCAGCGCACGATCGAGGTCCGCCTGGCTTCTGCTGCGGCGTCGCCC CATTCACGATGATGTCGCAGCGACTCGTCCACCGCGTCTCTCAACGGTCG TGCAGCCGCTGATCCTTACCGCCTTGTGCGCAGAGGCATTTTGACTGTCC GGTAAAAACAAACAAACGTGTTTTGTGTTTCAACACTCGCCTGTCGCCTG CCCCTTTTGTGTACCCTCGACAGACGTTCCTTGAGATGTATCTGGAGCGC CGGTCAAACTTGAAGCTGCTGATTCTTCTTACCGATGCTAGGAGGGAGCC TCTGTCTTCCGACGCGGGCATCCTTGAGTACGCGCAGGACAACGACAACC GACGGTATAAGGTCCTCGTAGTTGCCACCAAGGTAAGGGCAGCAGGCAGT GTCGCAGCAGGCGTCGCGTGGACAATCCCGACACCGTACGGGCTATCGAA TGCGTGTATTACCAATGATCCATAAAAGTTGAACCACTAAGACAAAGGGT CCTACCTGCTGCGCTGCTCCTTACAGCTGTATATCTCTAGAGCTGGCAGA GCTAGCGTTTGAAGGGGCACGCATGGTCCGTAGATTTGCCCAAACGTTAA ATCGAGCTCTTGTCTCACAGGCAATGGGTGTTCGGAGAATTTGGGGCGGT CATCGCGTCGGTGTCGAATGTTGGAGGCTGTTACGTACGGCACCCTCACC GGTACCAATAGTGGGTGTGGGAAAGAGAGGCGCATATCAATTGGTCTATG GTGACCTGCCAAGGCAGCACTCGTTCGGAACTACCTTGAGGTTTACTGGC CCTGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGT GACCCGATAAACTCGGGACTGACCCGATGGCGTATGGCGGTTTCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig898:3811..5655-

>mRNA_A-nodosum_M_contig898.2.1 ID=mRNA_A-nodosum_M_contig898.2.1|Name=mRNA_A-nodosum_M_contig898.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=363bp|location=Sequence derived from alignment at A-nodosum_M_contig898:3811..5655- (Ascophyllum nodosum dioecious)
ATGCTAGGAGGGAGCCTCTGTCTTCCGACGCGGGGTCCTACCTGCTGCGC
TGCTCCTTACAGCTGTATATCTCTAGAGCTGGCAGAGCTAGCGTTTGAAG
GGGCACGCATGGTCCGTAGATTTGCCCAAACGTTAAATCGAGCTCTTGTC
TCACAGGCAATGGGTGTTCGGAGAATTTGGGGCGGTCATCGCGTCGGTGT
CGAATGTTGGAGGCTGTTACGTACGGCACCCTCACCGGTACCAATAGTGG
GTGTGGGAAAGAGAGGCGCATATCAATTGGTCTATGGTGACCTGCCAAGG
CAGCACTCGTTCGGAACTACCTTGAGGTTTACTGGCCCTGTGCCGGCGGA
CTCTCGGCAGTGA
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