mRNA_A-nodosum_M_contig8977.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8977.2.1
Unique NamemRNA_A-nodosum_M_contig8977.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8977.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8977contigA-nodosum_M_contig8977:13939..17609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2475
Hectar predicted targeting categoryother localisation
Exons6
Cds size1464
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8977.2.1prot_A-nodosum_M_contig8977.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8977 15168..16972 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870329.801855-UTR-A-nodosum_M_contig8977:13938..144871680870329.801855-UTR-A-nodosum_M_contig8977:13938..14487Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8977 13939..14487 -
1680870329.8135598-UTR-A-nodosum_M_contig8977:15163..151671680870329.8135598-UTR-A-nodosum_M_contig8977:15163..15167Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8977 15164..15167 -
1680870329.9458807-UTR-A-nodosum_M_contig8977:16972..171391680870329.9458807-UTR-A-nodosum_M_contig8977:16972..17139Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8977 16973..17139 -
1680870329.9597278-UTR-A-nodosum_M_contig8977:17318..176091680870329.9597278-UTR-A-nodosum_M_contig8977:17318..17609Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8977 17319..17609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870329.8230722-CDS-A-nodosum_M_contig8977:15167..157061680870329.8230722-CDS-A-nodosum_M_contig8977:15167..15706Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8977 15168..15706 -
1680870329.9071107-CDS-A-nodosum_M_contig8977:15820..161951680870329.9071107-CDS-A-nodosum_M_contig8977:15820..16195Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8977 15821..16195 -
1680870329.9220483-CDS-A-nodosum_M_contig8977:16309..167781680870329.9220483-CDS-A-nodosum_M_contig8977:16309..16778Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8977 16310..16778 -
1680870329.9321485-CDS-A-nodosum_M_contig8977:16891..169721680870329.9321485-CDS-A-nodosum_M_contig8977:16891..16972Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8977 16892..16972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8977.2.1

>prot_A-nodosum_M_contig8977.2.1 ID=prot_A-nodosum_M_contig8977.2.1|Name=mRNA_A-nodosum_M_contig8977.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=488bp
MELKARQLWSTVHSTHQTGWSTSRAGSCRTECCDKRPLYGVAGTKTVEYC
VQHTPDEMVNVYSRKCRTEGCGKQPSYGVKGTKTMEYCAQHAPDEIVNVS
SRKCRTEGCGKQLSYGVAGTKTREYCVQHAPDGMVDVKNKKCRTEGCDKR
PLYGVAGTKTVEYCAQHAPDEMVNVYSRKCRTEGCGKKPSYGVTGTKTAE
FCAQHAPDGMGHVLSRMCKTEGCSKQPSYGVAGTKTVEYCAQHTPDGMVD
VRSRKCRTEGCDKWPLYGVKATKTVECCAQHAPDGMVDVKSKKCRTEGCD
KWPSFGVASTKTVEYCAQHAPDGMIDVKNRKCRTEGCGKQPSYGVAGINT
AEFCAQHASDEKEPSFGVANKRMAEHCGQHARLKCGVEGYREGEVDPDHS
GKESIANILPKSVKRQTVYPPATTSPPSEGSQGSRKRVRYTEITSTASIQ
PISRESAGRAGTVPDIEGQKSSVKRDTSVKAEVQLSL*
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mRNA from alignment at A-nodosum_M_contig8977:13939..17609-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8977.2.1 ID=mRNA_A-nodosum_M_contig8977.2.1|Name=mRNA_A-nodosum_M_contig8977.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3671bp|location=Sequence derived from alignment at A-nodosum_M_contig8977:13939..17609- (Ascophyllum nodosum dioecious)
GGAGTGGAAGGCACGAAAACTGTTGAGTACTGTGCACAGCACGCACCGGA
CGGGATGGTCGATGTCTACAGCAGAAAGTGCAGAACTGAAGGCTGCGGCA
AGCAACCATCGTATGGAGTTGCAGGTACGAAAGCGAGAGAGTACTGTGCG
CAGCATGCACCGGACGGGATGATCGATGTCAAGAGCAAGAAGTGCAGAAC
CGAAGGCTGCGGCAAGTGGCCGTTGTATGGAGTTAAAGGTACGAAAACTG
TGGAGTACTGTGCACAGCACGCACCGGACGGGATGATCGATGTCAAGAAT
AGGAAGTGCAGAACTGAAGTGCAGAACCGTCGTATGGAGTTGCAGGTACG
AAAGCGAGAACCGTCGTATGGAGTGGTCGACTTCGATAACAGAAAGTGCA
GAACCGGAGGCTGCGGCAAGAAACCGTCGTATGGAGTGACAGGCACGAAA
ACTGCAGAGTTCTGGATGAGCCACGTCTTAAGCAGGAAGTGCAAAACCGA
AGGCTGCGGCAAGCAACCGTCGTTTGCAGTTGCAGGTACGAAAACGAGAG
AGTACTGCGCACAGCACGCACCGGACGGGATGGTCAACGTCAAGAGCAGG
AAGTGCAGAACCGAAGGCTGCGACAAGAAACCGTCGTATGGAGTTAAAGG
CACGACAACTCTGGAGTACTGTGCACAGCACGCACCAGACGGGATGGTCA
ACGTCAAGAGCAGGAAGTGCAGAACTGAAGGCTGCGGCAAGCAACCATCG
TATGGAGTTGCAGGTACGAAAACGAGAGAGTACTGTGCGCAGCATGCACC
GGACGGAATGGTCGATGTCATTAACAAGAAGTGCAGAACCGAATGCTGCG
ACAAGAGGCCGTTGTATGGAGTTGCAGGTACGAAAACTGTGGAGTACTGT
GTACAGCACACACCGGACGAGATGGTCAACGTCTACAGCAGAAAGTGCAG
AACTGAAGGCTGCGGCAAGCAACCGTCGTATGGAGTTAAAGGCACGAAAA
CTATGGAGTACTGTGCACAGCACGCACCGGACGAGATTGTCAACGTCTCC
AGCAGAAAGTGCAGAACTGAAGGCTGCGGCAAGCAACTATCGTATGGAGT
TGCAGGTACGAAAACGAGAGAGTACTGTGTGCAGCATGCACCGGACGGGA
TGGTCGATGTCAAGAACAAGAAGTGCAGAACCGAAGGCTGCGACAAGAGG
CCGTTGTATGGAGTTGCAGGTACGAAAACTGTGGAGTACTGTGCACAGCA
CGCACCGGACGAGATGGTCAACGTCTACAGCAGAAAGTGCAGAACTGAAG
GCTGCGGCAAGCAACCGTCGTATGGAGTTGCAGGTACGAAAGCGAGAGAG
TACTGTGCGCATCATGCACCAAACGGGATGGTCGATGTCGATTTCAGAAA
GTGCAGAACCGAAGGCTGCGGCAAGAAACCGTCGTATGGAGTGACAGGCA
CGAAAACTGCAGAGTTCTGTGCTCAGCACGCACCAGACGGGATGGGCCAC
GTCTTAAGCAGGATGTGCAAAACCGAAGGCTGCAGCAAGCAACCGTCGTA
TGGAGTTGCAGGTACGAAAACTGTGGAGTACTGTGCACAGCACACACCGG
ACGGGATGGTCGATGTCAGGAGCAGGAAGTGCAGAACCGAAGGCTGCGAC
AAGTGGCCGTTGTATGGAGTTAAAGCTACGAAAACTGTGGAGTGCTGTGC
ACAGCACGCACCGGACGGGATGGTCGATGTCAAGAGCAAGAAGTGCAGAA
CCGAAGGCTGCGACAAGTGGCCGTCGTTCGGAGTGGCAAGCACGAAAACT
GTGAAGTACTGTGCACAGCACTCACCGGACGGGATGGTCGACGTCAAAAG
CAGGAAGTCCAGAACCGAAGGCTGCAGAAAGGGGCCGTCGTTTGGAGTTG
CAGGTACGAAAACTGTGGAGTACTGTGCACAGCACGCACCGGACGGGATG
ATCGATGTCAAGAATAGGAAGTGCAGAACCGAAGGCTGCGGCAAGCAACC
GTCGTATGGAGTGGCAGGTATCAACACTGCGGAGTTTTGTGCTCAGCACG
CATCGGACGAGAAGGAGCCATCGTTTGGAGTGGCCAACAAAAGAATGGCA
GAGCACTGTGGACAGCACGCCAGACTAAAATGCGGTGTCGAAGGATACAG
GGAGGGAGAGGTTGACCCAGACCATTCCGGGAAGGAATCTATTGCTAACA
TACTTCCAAAGAGCGTCAAACGTCAAACCGTTTACCCTCCTGCCACCACA
AGCCCTCCGTCGGAAGGTAGCCAGGGCTCTCGTAAGCGAGTACGTTACAC
AGAAATTACATCTACAGCCTCGATACAACCTATCTCACGAGAGTCGGCTG
GAAGAGCGGGAACTGTACCGGATATTGAGGGGCAAAAATCTTCCGTCAAA
CGAGATACTTCTGTGAAGGCGGAGGTGCAGCTCTCCTTGTAGCCAGGTAC
ACTATACGTGACCTCAACCTATATATGCTTAATATTTGTTGTTATATCCT
TGCTCTTGCCTTCCTGTCTGGGTTGTATTCCGCTGCTTATAGAACTGCCT
TTCTTGTGTAGCTTGCTGACGAGGATTTGTTTCTTGCTCCAAGCGTTTCA
TGTGGTTGTCTTTTGTTTGTTTTTTGTGTTTTTGTATTTTTGTTTCTTTT
TATTTATTTTTAATTTGTGTCCCTTCTGTGTCCTTTCCTGGCGACGATGT
CCTTTGCTGGTTATTCTCCTGCTATTTTCCTTCTGTCTGCTTTCGCTGCT
TTTTTTCTCCGAATATGTTATGTTCCCGATTGGTTTGGTTCGGTTTAGTT
CCATCTATCTTGTGACCACGACTGGATTCGTAGGGGATCAGTCAATGTGA
GATAAACAACAACAACAACAGTGACTGTAGTACTACGGTTCTCTCGGCCG
TAGCTCAATCTTTGGCTTTTTCTTTGTTCAGACAAAACCCCTACCTCGTC
TCGTTCTTGAATCTCGCGCTGTGTTTCGTCTCAAGTCTTTGAGTTCAGCT
CAAGGGCACCTCTTCCTCTTAGACCCTCAAGACCTTGCAGCTGCACCCAT
TGCCTTCACGAAACGTCACTAGTGCTTACCCGCAAGGTCTTGTTCTCCCG
TTCCCCCGTTTTTCGAACTCAGGTGCTGTGGTCAAGAGCGTGGTCATGAT
TTTTCTGCTATAGCCGCCGAGATGCTGATGGGTTTGGTGAGGGTCCTACC
GTGCGTACCTTCGGAACGATTTATTTTCACTTCATTCCGATTTTGAGGGG
GGCGAGCGTTTGTGTTTGGTAGAGTAGTCGTCGCGAATGCGTACTCGTCT
AACAATTATATGAGGAGGCAACTATATTGTATGGAGTTCAGCTACGAATT
AGGCTCACAGTGTATGGATAGGGGTGATCGATGGGGTGATTAAATGATTT
TGCGATAGGGGCTGAATTTATTGCAATTTACGCTGACCTTATAAGTCGAT
GCTGTTTCCGTGTTGTTCTTATGCATACCAATCGTTGACCACGTAAGCCG
GAACTAATGTTGACTGTGACTGAAGATGCCTGAAGCACACTCGGAGAAAT
TCCAATAATGCCATAGAAACGCTTAGAATAGCTTATCTTGGCATGTTCCT
GATACATCGCCTGCCGGAATGGAATGCTCAACTGGTCAGTCGTGAGAGGG
TAGAGGATAACTTGCAAATAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8977:13939..17609-

>mRNA_A-nodosum_M_contig8977.2.1 ID=mRNA_A-nodosum_M_contig8977.2.1|Name=mRNA_A-nodosum_M_contig8977.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1464bp|location=Sequence derived from alignment at A-nodosum_M_contig8977:13939..17609- (Ascophyllum nodosum dioecious)
ATGGAGTTAAAGGCACGACAACTCTGGAGTACTGTGCACAGCACGCACCA
GACGGGATGGTCAACGTCAAGAGCAGGAAGTTGCAGAACCGAATGCTGCG
ACAAGAGGCCGTTGTATGGAGTTGCAGGTACGAAAACTGTGGAGTACTGT
GTACAGCACACACCGGACGAGATGGTCAACGTCTACAGCAGAAAGTGCAG
AACTGAAGGCTGCGGCAAGCAACCGTCGTATGGAGTTAAAGGCACGAAAA
CTATGGAGTACTGTGCACAGCACGCACCGGACGAGATTGTCAACGTCTCC
AGCAGAAAGTGCAGAACTGAAGGCTGCGGCAAGCAACTATCGTATGGAGT
TGCAGGTACGAAAACGAGAGAGTACTGTGTGCAGCATGCACCGGACGGGA
TGGTCGATGTCAAGAACAAGAAGTGCAGAACCGAAGGCTGCGACAAGAGG
CCGTTGTATGGAGTTGCAGGTACGAAAACTGTGGAGTACTGTGCACAGCA
CGCACCGGACGAGATGGTCAACGTCTACAGCAGAAAGTGCAGAACTGAAG
GCTGCGGCAAGAAACCGTCGTATGGAGTGACAGGCACGAAAACTGCAGAG
TTCTGTGCTCAGCACGCACCAGACGGGATGGGCCACGTCTTAAGCAGGAT
GTGCAAAACCGAAGGCTGCAGCAAGCAACCGTCGTATGGAGTTGCAGGTA
CGAAAACTGTGGAGTACTGTGCACAGCACACACCGGACGGGATGGTCGAT
GTCAGGAGCAGGAAGTGCAGAACCGAAGGCTGCGACAAGTGGCCGTTGTA
TGGAGTTAAAGCTACGAAAACTGTGGAGTGCTGTGCACAGCACGCACCGG
ACGGGATGGTCGATGTCAAGAGCAAGAAGTGCAGAACCGAAGGCTGCGAC
AAGTGGCCGTCGTTCGGAGTGGCAAGTACGAAAACTGTGGAGTACTGTGC
ACAGCACGCACCGGACGGGATGATCGATGTCAAGAATAGGAAGTGCAGAA
CCGAAGGCTGCGGCAAGCAACCGTCGTATGGAGTGGCAGGTATCAACACT
GCGGAGTTTTGTGCTCAGCACGCATCGGACGAGAAGGAGCCATCGTTTGG
AGTGGCCAACAAAAGAATGGCAGAGCACTGTGGACAGCACGCCAGACTAA
AATGCGGTGTCGAAGGATACAGGGAGGGAGAGGTTGACCCAGACCATTCC
GGGAAGGAATCTATTGCTAACATACTTCCAAAGAGCGTCAAACGTCAAAC
CGTTTACCCTCCTGCCACCACAAGCCCTCCGTCGGAAGGTAGCCAGGGCT
CTCGTAAGCGAGTACGTTACACAGAAATTACATCTACAGCCTCGATACAA
CCTATCTCACGAGAGTCGGCTGGAAGAGCGGGAACTGTACCGGATATTGA
GGGGCAAAAATCTTCCGTCAAACGAGATACTTCTGTGAAGGCGGAGGTGC
AGCTCTCCTTGTAG
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