mRNA_A-nodosum_M_contig897.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig897.4.1
Unique NamemRNA_A-nodosum_M_contig897.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig897.4.1 vs. uniprot
Match: A0A6H5K2N6_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N6_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 6.540e-22
Identity = 63/120 (52.50%), Postives = 76/120 (63.33%), Query Frame = 1 
Query:    4 LVQRLSEELERQGQAANHHAKVIRQRESELEAALDRANRAHDELIAMEPPSLSQAIGGVEILLRVST------------QPAPSMAVAAGTKGKSGPIEEDAGACGRGNGKEDGWCLVRY 327
            LVQRLSEELERQG+  N +A ++ +RE +L+AALDRA RAHDELI+MEPPSLSQA+ GV+ILLRVST              AP+ AVAAG +  + P                 WCLVRY
Sbjct: 2404 LVQRLSEELERQGEVVNRYASLLLEREEQLDAALDRAARAHDELISMEPPSLSQAVDGVKILLRVSTTAAAGEQSAVTGDDAPAAAVAAGGEADAAPQV---------------WCLVRY 2508
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BLAST of mRNA_A-nodosum_M_contig897.4.1 vs. uniprot
Match: D8LEJ5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ5_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 3.490e-14
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    4 LVQRLSEELERQGQAANHHAKVIRQRESELEAALDRANRAHDELIAMEPPSLSQ 165
            LVQRLSEELERQG+A N HA ++ +RE +L+AALDRA RAHDELI+MEPPSLSQ
Sbjct: 2261 LVQRLSEELERQGEAVNRHASLLLEREEQLDAALDRAARAHDELISMEPPSLSQ 2314
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig897.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2N6_9PHAE6.540e-2252.50GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LEJ5_ECTSI3.490e-1475.93GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig897contigA-nodosum_M_contig897:20408..21014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size609
Hectar predicted targeting categoryother localisation
Exons1
Cds size606
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870328.2647154-CDS-A-nodosum_M_contig897:20407..210131680870328.2647154-CDS-A-nodosum_M_contig897:20407..21013Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig897 20408..21013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig897.4.1prot_A-nodosum_M_contig897.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig897 20408..21013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig897.4.1

>prot_A-nodosum_M_contig897.4.1 ID=prot_A-nodosum_M_contig897.4.1|Name=mRNA_A-nodosum_M_contig897.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=202bp
GLVQRLSEELERQGQAANHHAKVIRQRESELEAALDRANRAHDELIAMEP
PSLSQAIGGVEILLRVSTQPAPSMAVAAGTKGKSGPIEEDAGACGRGNGK
EDGWCLVRYEKAPSSKKKRGGISKETDVSTLSVEEGKAESGREADENALD
DHGDEEGDEGAGQAPARAAVEGKVEVAKMTEEWEKHEGEGEAEQAPLTVS
PS
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mRNA from alignment at A-nodosum_M_contig897:20408..21014+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig897.4.1 ID=mRNA_A-nodosum_M_contig897.4.1|Name=mRNA_A-nodosum_M_contig897.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=607bp|location=Sequence derived from alignment at A-nodosum_M_contig897:20408..21014+ (Ascophyllum nodosum dioecious)
GGTCTCGTGCAGCGGCTAAGCGAAGAGCTGGAGCGTCAGGGGCAGGCCGC
AAACCACCACGCGAAGGTGATCCGCCAGAGGGAATCCGAGCTCGAGGCCG
CTCTCGACCGGGCGAACCGAGCGCACGACGAGCTGATTGCCATGGAGCCC
CCGAGCCTGTCTCAGGCGATCGGCGGCGTGGAGATTCTGCTGCGGGTTTC
CACTCAGCCGGCGCCATCGATGGCAGTGGCGGCAGGAACAAAGGGAAAAA
GTGGACCGATCGAAGAAGATGCGGGGGCGTGTGGCCGTGGCAATGGAAAG
GAAGACGGGTGGTGTCTCGTTCGCTACGAGAAGGCCCCCTCTTCTAAGAA
GAAGCGTGGTGGGATTTCGAAGGAAACTGATGTGTCGACACTCTCGGTCG
AGGAAGGAAAGGCGGAAAGCGGCCGGGAGGCCGATGAAAACGCTCTCGAT
GACCACGGTGACGAGGAGGGAGATGAGGGTGCCGGTCAAGCGCCGGCGCG
GGCGGCCGTCGAGGGGAAGGTGGAGGTTGCGAAGATGACAGAAGAGTGGG
AGAAACATGAGGGTGAAGGGGAAGCGGAGCAAGCCCCTCTCACGGTATCT
CCTTCAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig897:20408..21014+

>mRNA_A-nodosum_M_contig897.4.1 ID=mRNA_A-nodosum_M_contig897.4.1|Name=mRNA_A-nodosum_M_contig897.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at A-nodosum_M_contig897:20408..21014+ (Ascophyllum nodosum dioecious)
GGTCTCGTGCAGCGGCTAAGCGAAGAGCTGGAGCGTCAGGGGCAGGCCGC
AAACCACCACGCGAAGGTGATCCGCCAGAGGGAATCCGAGCTCGAGGCCG
CTCTCGACCGGGCGAACCGAGCGCACGACGAGCTGATTGCCATGGAGCCC
CCGAGCCTGTCTCAGGCGATCGGCGGCGTGGAGATTCTGCTGCGGGTTTC
CACTCAGCCGGCGCCATCGATGGCAGTGGCGGCAGGAACAAAGGGAAAAA
GTGGACCGATCGAAGAAGATGCGGGGGCGTGTGGCCGTGGCAATGGAAAG
GAAGACGGGTGGTGTCTCGTTCGCTACGAGAAGGCCCCCTCTTCTAAGAA
GAAGCGTGGTGGGATTTCGAAGGAAACTGATGTGTCGACACTCTCGGTCG
AGGAAGGAAAGGCGGAAAGCGGCCGGGAGGCCGATGAAAACGCTCTCGAT
GACCACGGTGACGAGGAGGGAGATGAGGGTGCCGGTCAAGCGCCGGCGCG
GGCGGCCGTCGAGGGGAAGGTGGAGGTTGCGAAGATGACAGAAGAGTGGG
AGAAACATGAGGGTGAAGGGGAAGCGGAGCAAGCCCCTCTCACGGTATCT
CCTTCA
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