mRNA_A-nodosum_M_contig897.23.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig897.23.1 vs. uniprot
Match: D8LEJ3_ECTSI (Methyltranfer_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEJ3_ECTSI) HSP 1 Score: 296 bits (758), Expect = 1.010e-80 Identity = 326/895 (36.42%), Postives = 416/895 (46.48%), Query Frame = 3
Query: 369 PLVTEALTTVLGKFTPSQLKRAIDTREGGELERLLRDPGSDGERAASQLRDLLEAVVSVV--GKEKND----SAVKVITGCSALLLWESRTLRERVHDLLVKDGVCSEEVSQLIVAFPSFLTLPPAARDTIGHLLGTVGLTAKEVARLAKRRPHVLES---SEFRRLVDVFLYDLEISKTGLRKMIRSQPSLLSLSLTGDVQRNLKFXXXXXXXXXXXXXXXXXXXXXXXXXXXDKNIRPVVQWLGSPDPSAQIATVL-------------------------------------------SSTRGAEDPRGPTTSAEKPSLQGYYPYSAAGSHGEENRQQDGRDGDVILGLAEGRELNEMGLPSSLSAGETPIKVPAYVCGE-WEWGLGLGPEERKRVIFKQGDMLWKSVPGNLAKSTAWFVKEVGLSWDAMRKLAARSPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAMRDAGVSPAFSDLRAICNYTESRFSDWLERHTNPIPHGAASSSINREALPSRTAASKTTDSKGAGDVGSDAEAAGLQSQPYRSVVRGSGEAARPSFRANSLVELGISYAVRSLFPNGERVPSAAAMGASGKASIPPTRSSLGSAVAGEEAFAPGRTRGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRASAQNALANDLADTTSFVRAEALHFARQAA----------------------SEGRAWDLVVIDPPTLRRKSS---ARASNAYARMAGAVSRLLR-SGGMLMVVDGSDGEIFETHEEMVEMFSLEAARVAGLSLTLLDAGGESHAPSSPDSEHDASEAS 2816
P L LG L+ + +LE L G+ RA ++LR LLEAV SVV +EK+D +A +V+ GC ALLL + + L R L +GV E +QL V +P + TLPPAAR IG +G VGLTAK+V RLAKRRP V+E+ RRLVD+ L DL + K L +M+R XXXXXXXXXXXXXXXXXXXXXXXXXXX IRPVV WLG+PDP AQ +S R +P G + + + GE ++ R+ +G G E E + VP Y G G EER++++ KQGD+LWKSV GNLAKS +WFV+EVGLSW XXXXXXXXXXXXXXXXXXXXXXXXXXXXX AMR AG PAF LRA+CNY E RFS WLER ++ ++ + PSR +P R + + + S SL ELG++YA ++ N R FAPGR +ALVRK++RGL+VLDL CGTGGFALN+A GGARS +GVDK+ARAVR + +NA AN L D +F++A+ FA + E +AWDLVV+DPP+ KS+ ARA A+ R+A +V+ ++R SGGML+VV +F+T EEM +F+ AA AG+SL+L S P + E +AS S
Sbjct: 72 PFTVAILLESLGDVPQRTLRHLAGSPPASQLELTLSGSGARASRAQAKLRGLLEAVESVVVGAQEKDDGLASAATRVVAGCPALLLLDGKELLNRGTQLRDMEGVTEETAAQLAVEYPGYFTLPPAARARIGFFVGKVGLTAKDVGRLAKRRPDVIENIGGGHVRRLVDLLLEDLHVGKAALLRMVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRPVVDWLGAPDPEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASVRQTTNPSGLDRKSGRDRIAAATTAGFPDDAGELTLRRAAREEVAAVGQGAGPEPQRA---------EPTLAVPVYTEGVGXXXXXXFGREERRKIVCKQGDLLWKSVVGNLAKSASWFVEEVGLSWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------AMRAAGAPPAFRHLRALCNYPEDRFSAWLERIVLDADDSSSPATASSAVSPSRP-------------------------RPGRRLGGDADDPPTSSLSTTSLAELGLTYAAATM--NAPRRQ---------XXXXXXXXXXXXXXXXXXXXFAPGRAEVKALVRKLARGLDVLDLMCGTGGFALNAAAGGARSVIGVDKAARAVRTATKNARANGLDDAATFLKADVAAFAGASXXXXXXXXXXXXXXXXXXXXXGPGERKAWDLVVVDPPSFLAKSARSTARAVKAFTRLAESVALVVRPSGGMLVVVYEPGDGVFDTPEEMTAVFT-SAASAAGVSLSLSLLEARSARPPATGGEENASSGS 861
BLAST of mRNA_A-nodosum_M_contig897.23.1 vs. uniprot
Match: A0A4D9CY43_9STRA (PUA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CY43_9STRA) HSP 1 Score: 102 bits (255), Expect = 6.610e-19 Identity = 67/160 (41.88%), Postives = 101/160 (63.12%), Query Frame = 3
Query: 2280 RALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRASAQNALANDLADTTSFVRAEALHFARQAASEG-RAWDLVVIDPPTLR--RKSSARASNAYARMAGAVSRLLRSGGMLMVVDGSDGEIFETHEEMVEMFSLEAARVAGLSLTLL 2750
R +++ +SRG VLDLFC TGGFALN+A GGAR A+GVD SA A+ + +NA ANDL +F +++ L +AR G +A+D+V+ DPP L R+ RA + Y ++ AV R++ SGG+++ S + + EE +M + +AA G S+T+L
Sbjct: 325 RQMIQSLSRGKRVLDLFCYTGGFALNAARGGAREAIGVDSSALAIETAMENARANDLEGHVTFCKSDVLVYARDLGKTGEKAFDIVIADPPKLAPTRRDLPRALHKYLKINRAVFRMVASGGLVLTHTCS-AALTQDPEEFRKMVT-QAAHDVGRSITIL 482
BLAST of mRNA_A-nodosum_M_contig897.23.1 vs. uniprot
Match: UPI000C1CF87F (uncharacterized protein LOC111402390 isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CF87F) HSP 1 Score: 92.8 bits (229), Expect = 6.680e-16 Identity = 55/133 (41.35%), Postives = 78/133 (58.65%), Query Frame = 3
Query: 2256 FAPGRTRGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRASAQNALANDL-ADTTSFVRAEALHFARQAASEGRAWDLVVIDPPTL--RRKSSARASNAYARMAGAVSRLLRSGGMLM 2645
F + R L+ +S G + LD+FC TGGFALN+A GGA SA GVD S A+ + +N + N L SF+R +A F + A ++G +WD+V++DPP L RRK AS Y + ++ R GG+LM
Sbjct: 250 FYADQRENRKLISSISEGQKTLDIFCYTGGFALNAACGGALSATGVDSSLPALEVANENIVLNGLDPGRISFLRQDATEFMKNAITKGESWDIVILDPPKLAPRRKVLQSASGMYRNLNSLAMQITRRGGLLM 382
BLAST of mRNA_A-nodosum_M_contig897.23.1 vs. uniprot
Match: A0A835QIH7_VANPL (PUA domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QIH7_VANPL) HSP 1 Score: 92.0 bits (227), Expect = 1.200e-15 Identity = 53/125 (42.40%), Postives = 77/125 (61.60%), Query Frame = 3
Query: 2280 RALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRASAQNALANDL-ADTTSFVRAEALHFARQAASEGRAWDLVVIDPPTL--RRKSSARASNAYARMAGAVSRLLRSGGMLM 2645
R L+ +S+ L VLD+FC +GGFALN+A GGA +G+D S A+ + +N N+L D SF++ +A F + AAS+ WDLV++DPP L RRK AS Y R+ ++ + GG+LM
Sbjct: 259 RCLIHAISKNLRVLDVFCYSGGFALNAAAGGADHVIGIDSSLPALELAKENVQLNNLDPDKISFLKEDAAEFMKCAASKNELWDLVILDPPKLAPRRKVLQSASGMYRRLNSLAMQITKRGGLLM 383
BLAST of mRNA_A-nodosum_M_contig897.23.1 vs. uniprot
Match: A0A7J0DJW2_9ERIC (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0DJW2_9ERIC) HSP 1 Score: 88.6 bits (218), Expect = 1.220e-15 Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = 3
Query: 2256 FAPGRTRGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRASAQNALANDL-ADTTSFVRAEALHFARQAASEGRAWDLVVIDPPTL--RRKSSARASNAYARMAGAVSRLLRSGGMLM 2645
F + R + +S G VLD++C +GGFALN+A GGAR+ GVD S A+ + +N + N+L + SF+R +A F + A S WD+V+IDPP L RRK AS Y + RL + GG+LM
Sbjct: 18 FYTDQRENRHFISTISDGQRVLDMYCYSGGFALNAAHGGARNVTGVDSSLPALELARENIVLNNLDPEKISFLRHDAAAFMKDAVSRNETWDIVIIDPPKLAPRRKVLQSASGMYRNLNSLAMRLTKRGGLLM 150
BLAST of mRNA_A-nodosum_M_contig897.23.1 vs. uniprot
Match: UPI0019298C57 (ribosomal RNA large subunit methyltransferase I isoform X1 n=4 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0019298C57) HSP 1 Score: 91.7 bits (226), Expect = 1.670e-15 Identity = 61/172 (35.47%), Postives = 96/172 (55.81%), Query Frame = 3
Query: 2256 FAPGRTRGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRASAQNALANDL-ADTTSFVRAEALHFARQAASEGRAWDLVVIDPPTL--RRKSSARASNAYARMAGAVSRLLRSGGMLMVVDGSDGEIFETHEEMVEMFSLEAARVAGLSLTLLDAGG 2762
F + R L+ +S+G +VLD+FC +GGFALN+A GGA +G+D S+ A+ + +N N + SF+R +A F ++AAS + WD+V++DPP L RRK AS Y + ++ + GG+LM S G I ++ + + AA +AG +T+L G
Sbjct: 257 FYADQRENRRLISLISKGQKVLDVFCYSGGFALNAAKGGAEYVIGIDSSSPALELAEENVRLNKFNPEKISFMRKDATEFMKEAASRQKVWDIVILDPPKLAPRRKVLQNASGMYRNLNSLAMKITKKGGLLMTCSCS-GAITQSGTFLRILQG--AASLAGRKITILRQAG 425
BLAST of mRNA_A-nodosum_M_contig897.23.1 vs. uniprot
Match: A0A7I8L8E6_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L8E6_SPIIN) HSP 1 Score: 91.3 bits (225), Expect = 2.190e-15 Identity = 63/172 (36.63%), Postives = 92/172 (53.49%), Query Frame = 3
Query: 2256 FAPGRTRGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRASAQNALANDLADTT-SFVRAEALHFARQAASEGRAWDLVVIDPPTL--RRKSSARASNAYARMAGAVSRLLRSGGMLMVVDGSDGEIFETHEEMVEMFSLEAARVAGLSLTLLDAGG 2762
F + R L+ +S+G VLD+ C +GGFALNSA GGA +GVD S A+ + +N + N++ + SFV+ +A F + AAS +WDLV++DPP L RRK+ AS Y + ++ R GG+LM S T + AA +AG +T+L G
Sbjct: 255 FYADQRESRQLITSISKGKRVLDICCYSGGFALNSARGGAIDVIGVDSSLPALELARENIVLNEMDPSRISFVKEDATAFMKGAASRQESWDLVILDPPKLAPRRKALQSASGMYRSLNSLAMKITRPGGLLMTCSCSGAM---TQSGIFLNILQNAASMAGRKITVLRQAG 423
BLAST of mRNA_A-nodosum_M_contig897.23.1 vs. uniprot
Match: A0A835H6G6_9MAGN (PUA domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835H6G6_9MAGN) HSP 1 Score: 90.9 bits (224), Expect = 3.010e-15 Identity = 62/175 (35.43%), Postives = 94/175 (53.71%), Query Frame = 3
Query: 2280 RALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRASAQNALANDL-ADTTSFVRAEALHFARQAASEGRAWDLVVIDPPTL--RRKSSARASNAYARMAGAVSRLLRSGGMLMVVDGSDG--------EIFETHEEMV---EMFSLEAARVAGLSLTLLDAGG 2762
R + +++G VLD+ C +GGFALNSA GGA + +G+D S A+ + +N N+L + SF+R +A F ++A S +WDLV++DPP L RRK AS Y + ++ +SGG+LM S + + E MV +F AA +AG +T+L G
Sbjct: 253 RQFISSIAQGQNVLDMCCYSGGFALNSASGGAENVIGIDSSLPALELAKENIALNNLDPERISFLRKDATEFMKEAVSRQESWDLVILDPPKLAPRRKDLQGASGMYRNLNSLAMQVTKSGGLLMTCSCSGAMTQSGMFLRVLQATEIMVFLANIFLQGAASMAGRKVTVLRQSG 427
BLAST of mRNA_A-nodosum_M_contig897.23.1 vs. uniprot
Match: A0A2K1IND2_PHYPA (PUA domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IND2_PHYPA) HSP 1 Score: 90.9 bits (224), Expect = 3.630e-15 Identity = 56/125 (44.80%), Postives = 77/125 (61.60%), Query Frame = 3
Query: 2280 RALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRASAQNALANDL-ADTTSFVRAEALHFARQAASEGRAWDLVVIDPPTL--RRKSSARASNAYARMAGAVSRLLRSGGMLM 2645
R L+R ++ G VLDL C +GGFALN+ALGGA GVD S+ A+ + NA N L A++ FV+A+ + + A SEG+ WD+VV+DPP L RK RA+ Y + RL + GG+LM
Sbjct: 294 RLLLRSLASGSSVLDLCCYSGGFALNAALGGASYITGVDSSSPALELAKSNASLNRLDANSIDFVKADVAEYMKSALSEGKQWDIVVLDPPKLAPNRKVLQRATAKYRNLNAMAIRLTKPGGLLM 418
BLAST of mRNA_A-nodosum_M_contig897.23.1 vs. uniprot
Match: UPI001FB0B751 (ribosomal RNA large subunit methyltransferase I n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0B751) HSP 1 Score: 90.1 bits (222), Expect = 5.020e-15 Identity = 61/168 (36.31%), Postives = 94/168 (55.95%), Query Frame = 3
Query: 2256 FAPGRTRGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRASAQNALANDL-ADTTSFVRAEALHFARQAASEGRAWDLVVIDPPTL--RRKSSARASNAYARMAGAVSRLLRSGGMLMVVDGSDGEIFETHEEMVEMFSLEAARVAGLSLTLL 2750
F + R + VS G VLD++C TGGFALN+ +GGA +GVD S+ A+ + QN + N+L + SF R +A F + AAS WD+V++DPP L RRK AS Y + R+++ GG+LM S G + ++ + + + AA +AG +T++
Sbjct: 251 FYADQRENRQFISTVSDGQRVLDMYCYTGGFALNAVVGGATDVIGVDSSSPALELANQNIVLNNLDPNRVSFRRNDAADFLKDAASRNELWDIVIMDPPKLAPRRKVLQNASGMYRSLNSLAMRVVKKGGLLMTCSCS-GAMTQSGTFLTTLQA--AATMAGRKITVV 415 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig897.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig897.23.1 >prot_A-nodosum_M_contig897.23.1 ID=prot_A-nodosum_M_contig897.23.1|Name=mRNA_A-nodosum_M_contig897.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=973bp MWPTPHYLLSPFAGFARGLPVFGAISPRPLRVSQHFAAEYAPGVAFISSVback to top mRNA from alignment at A-nodosum_M_contig897:190206..198459- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig897.23.1 ID=mRNA_A-nodosum_M_contig897.23.1|Name=mRNA_A-nodosum_M_contig897.23.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8254bp|location=Sequence derived from alignment at A-nodosum_M_contig897:190206..198459- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig897:190206..198459- >mRNA_A-nodosum_M_contig897.23.1 ID=mRNA_A-nodosum_M_contig897.23.1|Name=mRNA_A-nodosum_M_contig897.23.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2919bp|location=Sequence derived from alignment at A-nodosum_M_contig897:190206..198459- (Ascophyllum nodosum dioecious)back to top |