mRNA_A-nodosum_M_contig897.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig897.1.1
Unique NamemRNA_A-nodosum_M_contig897.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig897.1.1 vs. uniprot
Match: D7FV01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV01_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.010e-36
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 SRRVESVRKDIECCFGIIKGRWRLFKGGILFNTREKIDNAWFTACILHNMLHKVKRLDEMEEDADWVGSAGE 216
            SRR+ESVRKDIECCFG +KGRWRLF+G I F +REKIDNAW TACILHNMLHK   LDEMEEDADWVGSAGE
Sbjct:  170 SRRMESVRKDIECCFGRVKGRWRLFRGNIPFGSREKIDNAWLTACILHNMLHKFNGLDEMEEDADWVGSAGE 241
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BLAST of mRNA_A-nodosum_M_contig897.1.1 vs. uniprot
Match: A0A6H5KYV4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYV4_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.220e-35
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:   19 VRKDIECCFGIIKGRWRLFKGGILFNTREKIDNAWFTACILHNMLHKVKRLDEMEEDADWVGSAG 213
            +RKD+ECCFG +KGRWRLF G ILF+TR+K+DNAWFTACILHNMLH   RLDEMEEDADWVGSAG
Sbjct:    1 MRKDMECCFGRVKGRWRLFGGDILFSTRQKVDNAWFTACILHNMLHSFNRLDEMEEDADWVGSAG 65
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BLAST of mRNA_A-nodosum_M_contig897.1.1 vs. uniprot
Match: A0A6H5KVL5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL5_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 5.740e-35
Identity = 56/71 (78.87%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 SRRVESVRKDIECCFGIIKGRWRLFKGGILFNTREKIDNAWFTACILHNMLHKVKRLDEMEEDADWVGSAG 213
            SRR+ES+RKDIECCFG +KGRWRLF G +LF+TR+K+DNAWFTACILHNMLH   RLDEMEED  WVGSAG
Sbjct:  178 SRRLESMRKDIECCFGRVKGRWRLFGGDMLFSTRQKVDNAWFTACILHNMLHSFNRLDEMEEDGVWVGSAG 248
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BLAST of mRNA_A-nodosum_M_contig897.1.1 vs. uniprot
Match: A0A6H5JU81_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU81_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.230e-34
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 SRRVESVRKDIECCFGIIKGRWRLFKGGILFNTREKIDNAWFTACILHNMLHKVKRLDEMEEDADWVGSA 210
            SRR+ES+RKDIECCFG +KG WRLF G ILF+TR K+DNAWFTACILHNMLH   RLDEMEEDADW+GSA
Sbjct:  185 SRRLESMRKDIECCFGRVKGLWRLFGGDILFSTRPKVDNAWFTACILHNMLHSFNRLDEMEEDADWMGSA 254
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BLAST of mRNA_A-nodosum_M_contig897.1.1 vs. uniprot
Match: A0A6H5K7N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.800e-33
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 SRRVESVRKDIECCFGIIKGRWRLFKGGILFNTREKIDNAWFTACILHNMLHKVKRLDEMEEDADWVGSAG 213
            SRR+ES+RKDIECCFG +KGRWRLF G ILF+TR+K DNA FTACILHNMLH   RLDEMEEDADWVGSAG
Sbjct:  237 SRRLESMRKDIECCFGRVKGRWRLFGGDILFSTRQKGDNACFTACILHNMLHSFNRLDEMEEDADWVGSAG 307
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BLAST of mRNA_A-nodosum_M_contig897.1.1 vs. uniprot
Match: A0A6H5K4F1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F1_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 3.970e-33
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:   16 SVRKDIECCFGIIKGRWRLFKGGILFNTREKIDNAWFTACILHNMLHKVKRLDEMEEDADWVGSAG 213
            S+RKDIECCFG +KGRWRLF G +LF+TR+K+DNAWFTACILHNMLH   RLDEMEED  WVGSAG
Sbjct:   77 SMRKDIECCFGRVKGRWRLFGGDMLFSTRQKVDNAWFTACILHNMLHSFNRLDEMEEDGVWVGSAG 142
[Close]
BLAST of mRNA_A-nodosum_M_contig897.1.1 vs. uniprot
Match: A0A6H5KCK8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK8_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 8.460e-29
Identity = 54/91 (59.34%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 SRRVESVRKDIECCFGIIKGRWRLF--------------------KGGILFNTREKIDNAWFTACILHNMLHKVKRLDEMEEDADWVGSAG 213
            SRR++++RKDIECCFG +KGRWRLF                     G ILF+ R+K+DNAWFTACILHNMLH   RLDEMEED  WVGSAG
Sbjct:  150 SRRLDNMRKDIECCFGRVKGRWRLFGVPVGNNAFSQRXXXXXXXXXGDILFSARQKVDNAWFTACILHNMLHSFNRLDEMEEDGVWVGSAG 240
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BLAST of mRNA_A-nodosum_M_contig897.1.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 7.690e-28
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 SRRVESVRKDIECCFGIIKGRWRLFKGGILFNTREKIDNAWFTACILHNMLHKVKRLDEMEEDADWVGSAGE 216
            S+R ES+RKDIEC FG +KGR+RLFK GILF TREKIDNAWFTACI+HNMLH+   L  +E+D DW G  GE
Sbjct:  308 SKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDNAWFTACIIHNMLHQFDGLANLEKDVDWAGKDGE 379
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BLAST of mRNA_A-nodosum_M_contig897.1.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 9.610e-28
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 SRRVESVRKDIECCFGIIKGRWRLFKGGILFNTREKIDNAWFTACILHNMLHKVKRLDEMEEDADWVGSA 210
            SRR+ES+RKDIECC+G +KGR+RLFK GIL+ TR+ IDN WFTACILHNMLH   +LD M E   W GSA
Sbjct:  174 SRRLESMRKDIECCYGRVKGRFRLFKAGILYKTRDSIDNPWFTACILHNMLHHYDKLDVMTEATGWQGSA 243
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BLAST of mRNA_A-nodosum_M_contig897.1.1 vs. uniprot
Match: A0A6H5L4M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M6_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.600e-26
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:   19 VRKDIECCFGIIKGRWRLFKGGILFNTREKIDNAWFTACILHNMLHKVKRLDEMEEDADWVGSAG 213
            +RKDIECC+G +KGR+RLFK GIL+ TR+ IDN WFTACILHNMLH   +LD M E   W GSAG
Sbjct:    1 MRKDIECCYGRVKGRFRLFKAGILYKTRDSIDNPWFTACILHNMLHHCDKLDVMTEATGWRGSAG 65
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig897.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV01_ECTSI1.010e-3683.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYV4_9PHAE3.220e-3581.54Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVL5_9PHAE5.740e-3578.87DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JU81_9PHAE2.230e-3480.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K7N8_9PHAE3.800e-3381.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4F1_9PHAE3.970e-3378.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCK8_9PHAE8.460e-2959.34DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JV45_9PHAE7.690e-2869.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K604_9PHAE9.610e-2868.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4M6_9PHAE1.600e-2667.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig897contigA-nodosum_M_contig897:3647..3877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size231
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.08e-21
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size231
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870328.2288208-CDS-A-nodosum_M_contig897:3646..38771680870328.2288208-CDS-A-nodosum_M_contig897:3646..3877Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig897 3647..3877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig897.1.1prot_A-nodosum_M_contig897.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig897 3647..3877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig897.1.1

>prot_A-nodosum_M_contig897.1.1 ID=prot_A-nodosum_M_contig897.1.1|Name=mRNA_A-nodosum_M_contig897.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=77bp
SRRVESVRKDIECCFGIIKGRWRLFKGGILFNTREKIDNAWFTACILHNM
LHKVKRLDEMEEDADWVGSAGEPFTNA
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mRNA from alignment at A-nodosum_M_contig897:3647..3877+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig897.1.1 ID=mRNA_A-nodosum_M_contig897.1.1|Name=mRNA_A-nodosum_M_contig897.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at A-nodosum_M_contig897:3647..3877+ (Ascophyllum nodosum dioecious)
AGCAGGCGGGTGGAGAGCGTTCGCAAGGACATCGAGTGCTGCTTCGGCAT
AATCAAGGGGCGGTGGAGGCTTTTCAAGGGCGGCATTCTGTTCAACACGC
GAGAGAAGATCGACAACGCATGGTTCACGGCGTGCATACTCCACAACATG
CTCCACAAGGTCAAAAGGCTGGACGAGATGGAGGAAGATGCGGACTGGGT
GGGGTCGGCCGGGGAGCCTTTCACCAACGCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig897:3647..3877+

>mRNA_A-nodosum_M_contig897.1.1 ID=mRNA_A-nodosum_M_contig897.1.1|Name=mRNA_A-nodosum_M_contig897.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=231bp|location=Sequence derived from alignment at A-nodosum_M_contig897:3647..3877+ (Ascophyllum nodosum dioecious)
AGCAGGCGGGTGGAGAGCGTTCGCAAGGACATCGAGTGCTGCTTCGGCAT
AATCAAGGGGCGGTGGAGGCTTTTCAAGGGCGGCATTCTGTTCAACACGC
GAGAGAAGATCGACAACGCATGGTTCACGGCGTGCATACTCCACAACATG
CTCCACAAGGTCAAAAGGCTGGACGAGATGGAGGAAGATGCGGACTGGGT
GGGGTCGGCCGGGGAGCCTTTCACCAACGCT
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