mRNA_A-nodosum_M_contig896.26.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig896.26.1
Unique NamemRNA_A-nodosum_M_contig896.26.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig896.26.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 9.190e-22
Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    4 YLLRSKDYALSSFQPFGQSNVIPSGSRTEWDRADKGGEYINNEYKVYCLQTGLSLEYASTNTPQEITMSERVGRTLMAMVRCLLGESGLP 273
            +L+++K  A+ + Q F QS V+P+  R +  R DKG E    E++ YCLQ G  LEYASTNTPQ++  +ER GRTL AMVRC+L +SGLP
Sbjct:   29 FLMKTKRDAIKALQLFNQSLVVPTRFRLDCLRGDKGTECTCREFREYCLQIGAKLEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLP 118
[Close]
BLAST of mRNA_A-nodosum_M_contig896.26.1 vs. uniprot
Match: A0A6H5JWN9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.030e-17
Identity = 38/91 (41.76%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:    1 IYLLRSKDYALSSFQPFGQSNVIPSGSRTEWDRADKGGEYINNEYKVYCLQTGLSLEYASTNTPQEITMSERVGRTLMAMVRCLLGESGLP 273
            I L++ K +++ S   F +  V+P G R    R D+G E+ + +++ YC   G+ LE+AS NTPQ+I  +ER GRT++ +VRCLL +S LP
Sbjct:  469 IVLMKDKAFSVDSLALFNKGTVVPIGERIHCLRGDQGTEFTSADFRQYCQDIGIKLEFASLNTPQQIGANERAGRTILNVVRCLLADSTLP 559
[Close]
BLAST of mRNA_A-nodosum_M_contig896.26.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.030e-17
Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:    1 IYLLRSKDYALSSFQPFGQSNVIPSGSRTEWDRADKGGEYINNEYKVYCLQTGLSLEYASTNTPQEITMSERVGRTLMAMVRCLLGESGLP 273
            +YL+RSKD A+++   F Q  VIP+G R E  R+D GGEY +  Y+ +C   G+  E+ +  TPQ+  +SER GRTLM +VRCL+    LP
Sbjct:   81 VYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLMHGGKLP 171
[Close]
BLAST of mRNA_A-nodosum_M_contig896.26.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.060e-17
Identity = 38/91 (41.76%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:    1 IYLLRSKDYALSSFQPFGQSNVIPSGSRTEWDRADKGGEYINNEYKVYCLQTGLSLEYASTNTPQEITMSERVGRTLMAMVRCLLGESGLP 273
            +Y +  K  ALSS   + Q   IP G R ++  +D GGEY+N++++ YC  TG+   ++S +TPQ+  +SER GRT+M M RC++ E+ LP
Sbjct:  333 VYFIAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEYVNSDFRDYCRTTGIIQRFSSPHTPQQNGISERDGRTIMNMARCIINETNLP 423
[Close]
BLAST of mRNA_A-nodosum_M_contig896.26.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.060e-17
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:    1 IYLLRSKDYALSSFQPFGQSNVIPSGSRTEWDRADKGGEYINNEYKVYCLQTGLSLEYASTNTPQEITMSERVGRTLMAMVRCLLGESGLP 273
            I L++ K  ++ S   F +  V+P+G R    R D+G E+ + E++ YC   G+ LE+AS NTPQ+I  +ER GRT++ +VRCLL +S LP
Sbjct:  563 IVLMKDKTCSVDSLALFNKGTVVPTGERIYCLRGDQGTEFTSAEFRQYCQDIGIKLEFASPNTPQQIGANERAGRTILNVVRCLLADSTLP 653
[Close]
BLAST of mRNA_A-nodosum_M_contig896.26.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.890e-17
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   10 LRSKDYALSSFQPFGQSNVIPSGSRTEWDRADKGGEYINNEYKVYCLQTGLSLEYASTNTPQEITMSERVGRTLMAMVRCLLGESGLP 273
            ++ K   +   Q   QS V P   R E   ADKGGEY ++ ++ YC   G+  + ASTNTPQ+I  +ER+ RTL+ M+RCLL +SGLP
Sbjct:    1 MKEKSATVDVLQLLNQSVVTPHELRLECVPADKGGEYTSSAFRRYCRDVGIKPQSASTNTPQQIRANERIARTLVGMLRCLLADSGLP 88
[Close]
BLAST of mRNA_A-nodosum_M_contig896.26.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.260e-16
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 IYLLRSKDYALSSFQPFGQSNVIPSGSRTEWDRADKGGEYINNEYKVYCLQTGLSLEYASTNTPQEITMSERVGRTLMAMVRCLLGESGLP 273
            I L++ +  ++ S   F +  V+P+G R    R D+G E+ + E++ YC   G+ LE+AS N PQ+I  +ER GRT++ +VRCLL +S LP
Sbjct:  138 IVLMKDETCSVDSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQDIGIKLEFASPNIPQQIGANERAGRTILNVVRCLLADSTLP 228
[Close]
BLAST of mRNA_A-nodosum_M_contig896.26.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.660e-16
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   97 RADKGGEYINNEYKVYCLQTGLSLEYASTNTPQEITMSERVGRTLMAMVRCLLGESGLP 273
            R DK  EY   E++ YCLQ G+ LEYASTNTPQ+I  +ER GRTL AMVRCLL +SGLP
Sbjct:  333 RGDKEAEYTCLEFREYCLQIGVKLEYASTNTPQQIGANERAGRTLAAMVRCLLTDSGLP 391
[Close]
BLAST of mRNA_A-nodosum_M_contig896.26.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.220e-16
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 IYLLRSKDYALSSFQPFGQSNVIPSGSRTEWDRADKGGEYINNEYKVYCLQTGLSLEYASTNTPQEITMSERVGRTLMAMVRCLLGESGLP 273
            I L++ +  ++ S   F +  V+P+G R    R D G E+ + E++ YC   G+ LE+AS NTPQ++  +ER GRT++ +VRCLL +S LP
Sbjct:  381 IVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGIKLEFASPNTPQQMGANERAGRTVLNVVRCLLADSTLP 471
[Close]
BLAST of mRNA_A-nodosum_M_contig896.26.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.260e-16
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 IYLLRSKDYALSSFQPFGQSNVIPSGSRTEWDRADKGGEYINNEYKVYCLQTGLSLEYASTNTPQEITMSERVGRTLMAMVRCLLGESGLP 273
            I L++ K  ++ S   F +  V+P+G R    R D G E+ + E++ YC   G+ LE+AS NTPQ+I  +E  GRT++ +VRCLL +S +P
Sbjct:  396 IVLMKDKTCSVDSLALFNKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGVKLEFASPNTPQQIGANELAGRTILNVVRCLLADSTVP 486
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig896.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE9.190e-2252.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWN9_9PHAE1.030e-1741.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE1.030e-1746.15Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KAG6_9PHAE1.060e-1741.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KC00_9PHAE1.060e-1742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUT9_9PHAE4.890e-1745.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KL37_9PHAE1.260e-1640.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWF9_9PHAE1.660e-1666.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KXM1_9PHAE3.220e-1640.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K129_9PHAE3.260e-1640.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig896contigA-nodosum_M_contig896:292819..293094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog15368.BRADI1G43020.1
PFAMsRVT_2,gag_pre-integrs,rve
Model size276
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.44e-14
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2IR@4447|Liliopsida,3IKX9@38820|Poales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size276
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870327.2820187-CDS-A-nodosum_M_contig896:292818..2930941680870327.2820187-CDS-A-nodosum_M_contig896:292818..293094Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig896 292819..293094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig896.26.1prot_A-nodosum_M_contig896.26.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig896 292819..293094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig896.26.1

>prot_A-nodosum_M_contig896.26.1 ID=prot_A-nodosum_M_contig896.26.1|Name=mRNA_A-nodosum_M_contig896.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp
IYLLRSKDYALSSFQPFGQSNVIPSGSRTEWDRADKGGEYINNEYKVYCL
QTGLSLEYASTNTPQEITMSERVGRTLMAMVRCLLGESGLP*
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mRNA from alignment at A-nodosum_M_contig896:292819..293094-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig896.26.1 ID=mRNA_A-nodosum_M_contig896.26.1|Name=mRNA_A-nodosum_M_contig896.26.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at A-nodosum_M_contig896:292819..293094- (Ascophyllum nodosum dioecious)
ATTTACCTGCTGAGGTCCAAGGATTACGCTCTCAGCTCGTTTCAGCCGTT
TGGGCAATCGAACGTGATCCCTAGCGGTTCCCGTACCGAGTGGGATAGGG
CAGACAAAGGTGGCGAGTACATCAACAACGAATACAAGGTCTACTGTCTC
CAGACGGGACTGTCGCTCGAGTACGCCAGCACCAACACACCTCAGGAAAT
CACTATGTCTGAGCGCGTCGGACGGACTCTCATGGCCATGGTCCGATGCC
TGCTTGGCGAGAGCGGACTACCATGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig896:292819..293094-

>mRNA_A-nodosum_M_contig896.26.1 ID=mRNA_A-nodosum_M_contig896.26.1|Name=mRNA_A-nodosum_M_contig896.26.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at A-nodosum_M_contig896:292819..293094- (Ascophyllum nodosum dioecious)
ATTTACCTGCTGAGGTCCAAGGATTACGCTCTCAGCTCGTTTCAGCCGTT
TGGGCAATCGAACGTGATCCCTAGCGGTTCCCGTACCGAGTGGGATAGGG
CAGACAAAGGTGGCGAGTACATCAACAACGAATACAAGGTCTACTGTCTC
CAGACGGGACTGTCGCTCGAGTACGCCAGCACCAACACACCTCAGGAAAT
CACTATGTCTGAGCGCGTCGGACGGACTCTCATGGCCATGGTCCGATGCC
TGCTTGGCGAGAGCGGACTACCATGA
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