mRNA_A-nodosum_M_contig8954.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8954.1.1
Unique NamemRNA_A-nodosum_M_contig8954.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8954.1.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE)

HSP 1 Score: 440 bits (1131), Expect = 2.760e-149
Identity = 224/409 (54.77%), Postives = 296/409 (72.37%), Query Frame = 1
Query:   19 MRRSKADVVRAQAAVDAVRSGAMSYRVASEAYSISVSSIAKRLKGKVRMDASVGAGTVLTLEEENSLEDALIWAAHRHLGVGRLELKQAVTKLCNDGRLVPWARDTGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFCANWQELITRLQPQPDHIWNIDETGALT--VEPAQVLPASLGQKVVGTKRSNSRENTTVVATINAAGTATPPLIIFKGQRVQAAWL-GNGGPPGSKFAATDSSFMQGAVFVNYITDFHNFIVENGLADGKPHILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGESDMAGVVKDAWAASFTVPQIKASFEGAGLSPVNMDRAINRLHGTGKRKARPDDRPPLADI 1236
            M RSK D  +AQ A++AVRSGAMS R A++AY ++  S+++RL G   MDA VG  TVLT+EEE+ +EDAL++AA   +G+ R  L++ V +LCNDGR +PW    GPGR WLD F +RHP LSERS RIYEANRI +DDE RL++F  ++ E + + +   DH+WN DETG+ +   +  +V+  S GQKV G  RSNSREN TVV TI+AAG    P II+KGQR+QA W+ G  GPP ++ A  DSSFMQG VFVNYI DFH  +++ GL +G PH+LVLDGHASHV  +V++LA  LNI L+Q+PSHSSH+ QPLDV +FG FK+ +T VL++FP ++GG++P +SDM G++ DAW  SF+  +  +SF GAGL PV+ +RA+ RL G GKRK R   RPP+ DI
Sbjct:    1 MVRSKVDPEQAQKAIEAVRSGAMSLRAAAQAYGVNKRSLSRRLTGDESMDAKVGPRTVLTVEEESFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGEFVDKEKIPADHLWNTDETGSTSQGTKTMKVITES-GQKVGGAMRSNSRENVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVIDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEERNTSSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPVEDI 408          
BLAST of mRNA_A-nodosum_M_contig8954.1.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI)

HSP 1 Score: 446 bits (1148), Expect = 2.810e-148
Identity = 228/409 (55.75%), Postives = 297/409 (72.62%), Query Frame = 1
Query:   19 MRRSKADVVRAQAAVDAVRSGAMSYRVASEAYSISVSSIAKRLKGKVRMDASVGAGTVLTLEEENSLEDALIWAAHRHLGVGRLELKQAVTKLCNDGRLVPWARDTGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFCANWQELITRLQPQPDHIWNIDETGALTVEPAQVLPA--SLGQKVVGTKRSNSRENTTVVATINAAGTATPPLIIFKGQRVQAAWL-GNGGPPGSKFAATDSSFMQGAVFVNYITDFHNFIVENGLADGKPHILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGESDMAGVVKDAWAASFTVPQIKASFEGAGLSPVNMDRAINRLHGTGKRKARPDDRPPLADI 1236
            M RSK D  +AQ A++AVRSGAMS R A++AY ++  S+++RL G V +DA VG  TVLT+EEEN +EDAL++AA   +G+ R  L++ V +LCNDGR +PW    GPGR WLD F +RHP LSERS RIYEANRI +DDE RL++F  ++ E + + +   DH+WN DETG+ T +  + + A    GQKVVG  RSNSRE  TVV TI+AAG    P II+KGQR+QA W+ G  GPP ++ A TDSSFMQG VFVNYI DFH  +++ GL +G PH+LVLDGHASHV  +VI+LA  LNI L+Q+PSHSSH+ QPLDV +FG FK+ +T VL++FP ++GG++P +SDM G++ DAW  SF+  Q  +SF GAGL PV+ +RA+ RL G GKRK R   RPP+ DI
Sbjct:    1 MVRSKVDPEQAQKAIEAVRSGAMSLRAAAQAYGVNKRSLSRRLSGDVSIDAKVGPRTVLTVEEENFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGEFVDKEKIPADHLWNTDETGS-TSQGTKTMKAIAESGQKVVGAMRSNSRETVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVIKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEQQNISSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPVEDI 408          
BLAST of mRNA_A-nodosum_M_contig8954.1.1 vs. uniprot
Match: A0A6H5JK80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK80_9PHAE)

HSP 1 Score: 416 bits (1068), Expect = 4.970e-137
Identity = 218/416 (52.40%), Postives = 286/416 (68.75%), Query Frame = 1
Query:   19 MRRSKADVVRAQAAVDAVRSGAMSYRVASEAYSISVSSIAKRLKGKVRMDASVGAGTVLTLEEENSLEDALIWAAHRHLGVGRLELKQAVTKLCNDGRLVPWARDTGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFCANWQELI---------TRLQPQPDHIWNIDETGALTVEPAQVLPASLGQKVVGTKRSNSRENTTVVATINAAGTATPPLIIFKGQRVQAAWL-GNGGPPGSKFAATDSSFMQGAVFVNYITDFHNFIVENGLADGKPHILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGESDMAGVVKDAWAASFTVPQIKASFEGAGLSPVNMDRAINRLHGTGKRKARPDDRPPLADI 1236
            M RSK D  +AQ A++AVRSGAMS R A++AY ++  S+++RL G V MDA VG  TVLT+EEEN +EDAL++AA   +G+ R  L++ V +LCNDGR + W    GPGR WLD F +RHP LSERS RIYEANRI +DDE  L++F  ++ E +         T+++ +   +                + A  GQKVVG  RSNSR+N TVV TI+AAG    P II+KGQR+QA W+ G  GPP ++ A TDSSFMQG VFVNYI DFH  +++ GL +G PH+LVLDGHASHV  +V++LA  LNI L+Q+PSHSSH+ QPLDV +FG FK  +T VL++FP ++GG++P +SDM G++ DAW  SF+  Q  +SF GAGL PV+ +RA+ RL G GKRK R   RPP+ DI
Sbjct:    1 MVRSKVDPEQAQKAIEAVRSGAMSLRAAAQAYGVNKRSLSRRLSGDVSMDAKVGPRTVLTVEEENFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDISWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETCLQTFYKDFGEFVDKENIPTCGTQMRQEYTDLERAVPGSTPQGTKTMKVIAESGQKVVGAMRSNSRDNVTVVVTISAAGATLAPWIIYKGQRMQADWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKWEITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPVEDI 416          
BLAST of mRNA_A-nodosum_M_contig8954.1.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 407 bits (1045), Expect = 2.200e-135
Identity = 217/424 (51.18%), Postives = 283/424 (66.75%), Query Frame = 1
Query:    4 ILLLRMRRSKADVVRAQAAVDAVRSGAMSYRVASEAYSISVSSIAKRLKGKVRMDASVGAGTVLTLEEENSLEDALIWAAHRHLGVGRLELKQAVTKLCNDGRLVPWARDTGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFCANWQELITRLQPQPDHIWNIDETGALTVE--PAQVLPASLGQKVVGTKRSNSRENTTVVATINAAGTATPPLIIFKGQRVQAAWLGN-GGPPGSKFAATDSSFMQGAVFVNYITDFHNFIVENGLADGKPHILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGESDMAGVVKDAWAASFTVPQIKASFEGAGLSPVNMDRAINRLHGTGKRKARPDDRPPLADIPSGDHGGRVE 1266
            +LLL M R++     A  A +AVRSG+MS   A+ AY IS +S+++RL G+  +DA VG GTV+T  EE++LED L++A    + +   +L + V +LCNDGR +PW  D GPGR WL+ FL RH R+S R  RIYE+NR+T+ ++ RL  F   W + I   QP  DH+WN DE+G  TV+    Q + A  GQ VV   RS SREN T+V TINAAG    P IIFKGQR    W+ +  GPPG+ +  T+SSFM G VF+ YI +FH  + +  L DGKPH+LVLDGHASHV LDVI+LA++LNI L QLPSH SH+TQPLDVA FGCFKK +  V+ +FP ++GG +P + DMAG++  AW +SFT    KASF GAGL PV+ +RA++RL    KRK    DRPPL D+P      R+E
Sbjct:   10 LLLLSMGRNRVCAEAATKACEAVRSGSMSGNAAAAAYGISKTSLSRRLSGECAIDARVGPGTVMTAAEEDALEDVLLYAGRNFIPLTTADLTERVRQLCNDGRPIPWTPDKGPGRSWLEGFLGRHERISLRLARIYESNRVTSAEDERLHKFYDFWGQFIDEHQPAADHVWNTDESGG-TVQGTQGQRVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVTLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGSSFTPEINKASFAGAGLWPVDRERALSRLLRP-KRKVTETDRPPLEDVPIAVTNERLE 431          
BLAST of mRNA_A-nodosum_M_contig8954.1.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE)

HSP 1 Score: 409 bits (1052), Expect = 3.060e-134
Identity = 218/410 (53.17%), Postives = 280/410 (68.29%), Query Frame = 1
Query:   19 MRRSKADVVRAQAAVDAVRSGAMSYRVASEAYSISVSSIAKRLKGKVRMDASVGAGTVLTLEEENSLEDALIWAAHRHLGVGRLELKQAVTKLCNDGRLVPWARDTGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFCANWQELITRLQPQPDHIWNIDETGALTVEPAQVLPA--SLGQKVVGTKRSNSRENTTVVATINAAGTATPPLIIFKGQRVQAAWLGN-GGPPGSKFAATDSSFMQGAVFVNYITDFHNFIVENGLADGKPHILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGESDMAGVVKDAWAASFTVPQIKASFEGAGLSPVNMDRAINRLHGTGKRKARPDDRPPLADIP 1239
            M R + D  +AQ A +AVR G MS R A++ Y I   S+ +RL G+V MDA VG GTV++ EEENS+ED L++A    L V RL L + V  LC D R  PW  + GPG+ WL  FL RHPR+ ER+ RIYEANR+T + EPR+  F   W  L+  L+P+ DH+ N DETG  T +  + + A    GQKVV + R+NSRENTT+V TI+A G+   P IIFKGQR+Q  W     GPP +++  TDSSFMQG VF+ Y+ DFH  + + GL DGKPHIL+LDGHASHV+++VIQLAM LNI LFQLPSH+SH+TQPLDV AFG FK+ VT VL+ +    GG +P + D+ GV+  AW A+FT  + ++SF GAGL PVNM+RA++RL GT KR      RPPL D+P
Sbjct:    1 MGRRRVDAQQAQKACEAVRGG-MSVRKAAKVYDIDRLSLKRRLDGEVAMDAKVGPGTVMSEEEENSIEDCLLYAGRNCLAVSRLHLLETVRLLCLD-RKTPWDPEKGPGKDWLAGFLERHPRVRERTTRIYEANRVTDESEPRIVEFYRKWAALLEDLKPEADHVHNTDETGT-TPQGNKTMKAYCQAGQKVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNIVLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNRSSFAGAGLWPVNMERAMSRLRGTAKRNENQTGRPPLKDVP 407          
BLAST of mRNA_A-nodosum_M_contig8954.1.1 vs. uniprot
Match: A0A6H5JRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA3_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 7.220e-133
Identity = 220/423 (52.01%), Postives = 281/423 (66.43%), Query Frame = 1
Query:   19 MRRSKADVVRAQAAVDAVRSGAMSYRVASEAYSISVSSIAKRLKGKVRMDASVGAGTVLTLEEENSLEDALIWAAHRHLGVGRLELKQAVTKLCNDGRLVPWARDTGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFCANWQELITRLQPQPDHIWNIDET---------GALTVEPAQVL----PASLGQ--KVVGTKRSNSRENTTVVATINAAGTATPPLIIFKGQRVQAAW-LGNGGPPGSKFAATDSSFMQGAVFVNYITDFHNFIVENGLADGKPHILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGESDMAGVVKDAWAASFTVPQIKASFEGAGLSPVNMDRAINRLHGTGKRKARPDDRPPLADIP 1239
            M R K D  + + A  A+  G MS R A+E + +  +SI  R +GK  M+A VG  T+L+ EEE+SLE  L++AA   L V R+ L+ AV +LCNDGR +PW  + GPG+ WL  FLRRH R++ERS RI+EAN IT D+EPR+  F   W  L+  ++P+ +H+ N DET         G    E A+      P+  G   KVVG+ RSNSRENTTVVATI+A G    P IIFKGQR+QA W +   G  G+K+  TD SFMQG +F+ Y+ DFH  + + GL DGKPHIL+LDGHASHV+++VI+LAM L I LFQLPSH+SH+TQPLDV AFG FKK+VT VL SF    GG +P + DM GV+ DAW  SFT    K+SF GAGL PVN +RA+ RL GT  +K R D+RPPL D+P
Sbjct:    1 MTRRKVDEEQVRKACAAIDDG-MSVRKAAEVFGVGRTSIVDRRRGKAAMNAKVGPETILSKEEEDSLEYILLFAARNFLAVDRVYLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFLRRHLRVAERSTRIFEANMITEDEEPRMVQFYERWAALLDEVKPEANHVHNTDETEPPRXHRRKGPEAAEGARAHRHGNPSRHGXDCKVVGSMRSNSRENTTVVATISADGHTWAPTIIFKGQRLQADWFVERNGLEGAKYTCTDYSFMQGDLFIAYLKDFHKQLCDRGLLDGKPHILLLDGHASHVSVEVIKLAMNLKIILFQLPSHTSHITQPLDVVAFGSFKKSVTRVLASFYRNSGGLLPLKRDMPGVIADAWKLSFTPEINKSSFAGAGLWPVNKERALGRLKGTATKKERRDERPPLQDVP 422          
BLAST of mRNA_A-nodosum_M_contig8954.1.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE)

HSP 1 Score: 407 bits (1046), Expect = 1.470e-130
Identity = 216/404 (53.47%), Postives = 277/404 (68.56%), Query Frame = 1
Query:   37 DVVRAQAAVDAVRSGAMSYRVASEAYSISVSSIAKRLKGKVRMDASVGAGTVLTLEEENSLEDALIWAAHRHLGVGRLELKQAVTKLCNDGRLVPWARDTGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFCANWQELITRLQPQPDHIWNIDETGALTVEPAQVLPA--SLGQKVVGTKRSNSRENTTVVATINAAGTATPPLIIFKGQRVQAAWLGN-GGPPGSKFAATDSSFMQGAVFVNYITDFHNFIVENGLADGKPHILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGESDMAGVVKDAWAASFTVPQIKASFEGAGLSPVNMDRAINRLHGTGKRKARPDDRPPLADIP 1239
            D  +AQ A +AVR G MS R A++ Y I   S+ +RL G+V MDA VG GTV++ EEENS+ED L++A    L V RL L + V  LC D R  PW  + GPG+ WL  FL RHPR+ ER+ RIYEANR+T + EPR+  F   W  L+  L+P+ DH+ N DETG  T +  + + A    GQKVV + R+NSRENTT+V TI+A G+   P IIFKGQR+Q  W     GPP +++  TDSSFMQG VF+ Y+ DFH  + + GL DGKPHIL+LDGHASHV+++VIQLAM LNI LFQLPSH+SH+TQPLDV AFG FK+ VT VL+ +    GG +P + D+ GV+  AW A+FT  + ++SF GAGL PVNM+RA++RL GT KR      RPPL D+P
Sbjct:  248 DAQQAQKACEAVRGG-MSVRKAAKVYDIDRLSLKRRLDGEVAMDAKVGPGTVMSEEEENSIEDCLLYAGRNCLAVSRLHLLETVRLLCLD-RKTPWDPEKGPGKDWLAGFLERHPRVRERTTRIYEANRVTDESEPRIVEFYRKWAALLEDLKPEADHVHNTDETGT-TPQGNKTMKAYCQAGQKVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNIVLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNRSSFAGAGLWPVNMERAMSRLRGTAKRNENQTGRPPLKDVP 648          
BLAST of mRNA_A-nodosum_M_contig8954.1.1 vs. uniprot
Match: A0A6H5L1T0_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T0_9PHAE)

HSP 1 Score: 394 bits (1011), Expect = 2.900e-126
Identity = 216/414 (52.17%), Postives = 280/414 (67.63%), Query Frame = 1
Query:    4 ILLLRMRRSKADVVRAQAAVDAVRSGAMSYRVASEAYSISVSSIAKRLKGKVRMDASVGAGTVLTLEEENSLEDALIWAAHRHLGVGRLELKQAVTKLCNDGRLVPWARDTGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFCANWQELITRLQPQPDHIWNIDETGALT--VEPAQVLPASLGQKVVGTKRSNSRENTTVVATINAAGTATPPLIIFKGQRVQAAWL-GNGGPPGSKFAATDSSFMQGAVFVNYITDFHNFIVENGLADGKPHILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGESDMAGVVKDAWAASFTVPQIKASFEGAGLSPVNMDRAINRLHGTGKRKARPDDRPPLADI 1236
            +LLL M R + D  +AQ AVDAVRSG MS RVA+  Y + ++S+  R+K KV +DA VG GTVL+ EEE+ +ED LI+A+   L +GR EL+ AV  +C DGR VPW  D GPG  WL+ F+ RHP LSER+  IYEANRI  D EPRL++F   W E +   +  P+ I N DET +     +  + + A  G KV G +RSNSRENTTVVATI A G    P IIFKGQR+Q AW+  N G P +K+  T+SSF+Q  VF++Y+ D    +   GL  GK   LVLDGHASH   D I L ++L+++LFQLPSH+SH+TQPLDV  FG FK  +T VLT++PL++GG+ P + DMAGV+ +AWA SFT    KA+F+G+GL PV+M++AINRLH   KRK R  DRP   D+
Sbjct:   10 VLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLIYASRHFLLLGRRELRDAVRNICTDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYKAWAEYLEETKLPPERILNTDETSSTPQGTKSGKAIVAR-GTKVPGARRSNSRENTTVVATIGADGHTFHPTIIFKGQRMQPAWIQDNNGVPDAKYTVTESSFIQSHVFLDYLRDLRKQLDARGLL-GKA-ALVLDGHASHTTFDAISLGISLDMDLFQLPSHTSHITQPLDVGTFGTFKMEITKVLTAYPLKNGGRSPVKRDMAGVIAEAWAGSFTPENNKAAFKGSGLWPVSMEKAINRLHS--KRKQRDHDRPIREDL 418          
BLAST of mRNA_A-nodosum_M_contig8954.1.1 vs. uniprot
Match: A0A6H5JS97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS97_9PHAE)

HSP 1 Score: 384 bits (986), Expect = 2.010e-124
Identity = 203/422 (48.10%), Postives = 266/422 (63.03%), Query Frame = 1
Query:    4 ILLLRMRRSKADVVRAQAAVDAVRSGAMSYRVASEAYSISVSSIAKRLKGKVRMDASVGAGTVLTLEEENSLEDALIWAAHRHLGVGRLELKQAVTKLCNDGRLVPWARDTGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFCANWQELITRLQPQPDHIWNIDETGALTVEPAQVLPASLGQKVVGTKRSNSRENTTVVATINAAGTATPPLIIFKGQRVQAAWL-GNGGPPGSKFAATDSSFMQGAVFVNYITDFHNFIVENGLADGKPHILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGESDMAGVVKDAWAASFTVPQIKASFEGAGLSPVNMDRAINRLHGTGKRKARPDDRPPLADIPSGDHGGRVE 1266
            +LLL M R + D V A+ A +AVRSG MS   A+ A+ +  SS+ +RL G   MDA VG GTV+T  EE++++  L++A    + +   +L + V++LCNDGR +PW  D GPG+ WL  FL RH  +S R  RIYE+NR+T+ ++ RL  F   W E +   +P  DHIWN DE+G   +          G         +  EN T+V TINAAG    P IIFKGQR    W+    GPPG+ +  T+SSFM G VF+ YI DFH  + +  L DGKPH+LVLDGHASHV+L+V++LA +LNI L QLPSH SH+TQPLDVA FGCFKK +T  + +FP  HGG +P + DMA V+  AW+ SFT    KASF GAGL PV+ +RA++RL    KRK R  DRPPL D+P      R+E
Sbjct:   10 LLLLSMGRQRVDPVAAEKACEAVRSGRMSQNAAAAAFGLGRSSLQRRLDGNCAMDARVGPGTVMTKAEEDAVKYLLLYAGRNFIPLTTADLTERVSRLCNDGRPIPWNSDKGPGKDWLKGFLGRHEGISHRLARIYESNRVTSSEDERLHKFYGFWAEFLGEHRPAADHIWNTDESGTAGL-------CGTGAAGGPADAFHFAENCTIVTTINAAGAVLAPTIIFKGQRFNEDWIVDQDGPPGATYTCTESSFMCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRLLKP-KRKERETDRPPLQDVPIAVSNDRLE 423          
BLAST of mRNA_A-nodosum_M_contig8954.1.1 vs. uniprot
Match: A0A6H5L2E0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E0_9PHAE)

HSP 1 Score: 373 bits (958), Expect = 2.140e-122
Identity = 197/386 (51.04%), Postives = 251/386 (65.03%), Query Frame = 1
Query:   85 MSYRVASEAYSISVSSIAKRLKGKVRMDASVGAGTVLTLEEENSLEDALIWAAHRHLGVGRLELKQAVTKLCNDGRLVPWARDTGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFCANWQELITRLQPQPDHIWNIDETGALTVEPAQVLPASLGQKVVGTKRSNSRENTTVVATINAAGTATPPLIIFKGQRVQAAWLGN-GGPPGSKFAATDSSFMQGAVFVNYITDFHNFIVENGLADGKPHILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGESDMAGVVKDAWAASFTVPQIKASFEGAGLSPVNMDRAINRLHGTGKRKARPDDRPPLADIP 1239
            MS R A+E + +  +SI  R +GKV M+A VG  T+L+ EEE+SLED L++AA   L V R+ L+ AV +LCNDGR + W  D GPG+ WL  FLRRHPR++ERS RIYEANR+T D+EPR+  F   W  L+  ++P  +H+ N DET   + EPA                      T VVA I+A      P IIFKGQR+Q  W     GP G+++  T SSFMQG VF+ Y+ DFH  + + GL DGKPHIL+LDGHASHV+++V +LAM L I  FQLPSH+SH+TQPLDV AFG FKK+VT VL SF    GG +P + DM GV+ DAW  SF     K+SF GAGL PVN +RA+ +L GT  +K R D+RPPL D+P
Sbjct:    1 MSVRKAAEDFGVGRTSIEDRRRGKVAMNAKVGPETILSNEEEDSLEDILLFAARNFLAVDRVHLRDAVRRLCNDGRRIIWDPDEGPGKDWLAGFLRRHPRVAERSTRIYEANRMTEDEEPRMVQFHERWAALLDEVKPAANHVHNTDETAGCSREPAA---------------------TNVVANISADDHTLAPTIIFKGQRLQTDWFAERNGPEGARYTCTGSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDGHASHVSVEVSKLAMNLKIISFQLPSHTSHITQPLDVVAFGRFKKSVTRVLASFYHNSGGSLPLKRDMPGVIADAWKLSFAPEINKSSFAGAGLWPVNKERALGQLKGTANKKERRDERPPLQDVP 365          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8954.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5E2_9PHAE2.760e-14954.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B2KWI5_ECTSI2.810e-14855.75Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JK80_9PHAE4.970e-13752.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYX7_9PHAE2.200e-13551.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV04_9PHAE3.060e-13453.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRA3_9PHAE7.220e-13352.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ12_9PHAE1.470e-13053.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L1T0_9PHAE2.900e-12652.17Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS97_9PHAE2.010e-12448.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2E0_9PHAE2.140e-12251.04DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8954contigA-nodosum_M_contig8954:7627..9243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LN28
PFAMsDDE_1
Model size1302
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.42e-49
EggNOG OGs2CZS4@1|root,2SBGG@2759|Eukaryota
DescriptionDDE superfamily endonuclease
Cds size1284
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870325.5523577-CDS-A-nodosum_M_contig8954:7626..83531680870325.5523577-CDS-A-nodosum_M_contig8954:7626..8353Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8954 7627..8353 -
1680870325.569235-CDS-A-nodosum_M_contig8954:8668..92251680870325.569235-CDS-A-nodosum_M_contig8954:8668..9225Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8954 8669..9225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870325.5837252-UTR-A-nodosum_M_contig8954:9225..92431680870325.5837252-UTR-A-nodosum_M_contig8954:9225..9243Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8954 9226..9243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8954.1.1prot_A-nodosum_M_contig8954.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8954 7627..9225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8954.1.1

>prot_A-nodosum_M_contig8954.1.1 ID=prot_A-nodosum_M_contig8954.1.1|Name=mRNA_A-nodosum_M_contig8954.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=428bp
MRRSKADVVRAQAAVDAVRSGAMSYRVASEAYSISVSSIAKRLKGKVRMD
ASVGAGTVLTLEEENSLEDALIWAAHRHLGVGRLELKQAVTKLCNDGRLV
PWARDTGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFCAN
WQELITRLQPQPDHIWNIDETGALTVEPAQVLPASLGQKVVGTKRSNSRE
NTTVVATINAAGTATPPLIIFKGQRVQAAWLGNGGPPGSKFAATDSSFMQ
GAVFVNYITDFHNFIVENGLADGKPHILVLDGHASHVNLDVIQLAMTLNI
ELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGESDMA
GVVKDAWAASFTVPQIKASFEGAGLSPVNMDRAINRLHGTGKRKARPDDR
PPLADIPSGDHGGRVEFFARPACREQAT
back to top

mRNA from alignment at A-nodosum_M_contig8954:7627..9243-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8954.1.1 ID=mRNA_A-nodosum_M_contig8954.1.1|Name=mRNA_A-nodosum_M_contig8954.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1617bp|location=Sequence derived from alignment at A-nodosum_M_contig8954:7627..9243- (Ascophyllum nodosum dioecious)
CCGATCCTGTTGCTAAGGATGCGTCGGTCTAAGGCGGACGTTGTGCGAGC GCAAGCGGCGGTTGATGCGGTTCGAAGCGGTGCGATGAGCTACCGAGTTG CTTCCGAGGCGTACTCTATTTCTGTGAGCTCAATCGCCAAGCGCTTGAAG GGCAAAGTGAGGATGGATGCATCAGTTGGCGCTGGTACAGTTCTTACTCT GGAAGAGGAAAATTCGCTGGAAGACGCCTTGATTTGGGCGGCACATCGAC ACCTCGGAGTTGGTCGATTAGAGCTCAAACAAGCGGTAACGAAGCTGTGC AACGACGGCCGGCTTGTACCTTGGGCTCGTGATACTGGTCCTGGGCGAAA GTGGTTGGATCTCTTCCTCAGGCGGCATCCGCGACTCTCGGAGCGCAGCT GCCGCATCTACGAAGCGAACCGTATTACCGCTGACGATGAACCGCGACTG AGGTCATTTTGTGCCAATTGGCAGGAGCTCATCACCAGGCTGCAGCCGCA GCCGGATCATATCTGGAATATAGACGAGACAGGTGCGTTGACTGTAGAAC CAGCGCAGGTACTCCCTGCCTCCCTGTGCAGTAGTGTACAACAGTACACC ATAGTTGTTCCCCGGTTCCCTGTACAGCAGTCTGCAACAGCACAACACAT TGTCTCCCCCCTTGTTGGACTGTTTGCTATTAATAGTAAGTGGTGCTGCC TGCACTGCCGTGACATGTGTCAGTAGAGCCTAAAATGTGTGCTGTCTGTT TTGCTTGGCCTGCACTGCTGTTTGCCTTGCAATGTGAAAACATGTCGTGT TCTGCACTTGGCCTCTACACAAATCCACACGCACATTTGCGCAGGTGTTA CGCCGCAAGGCACCAAAGCAAAGCGAGTCATCGCTGAGAGGGGGCAAAAG GTGGTCGGTACCAAGCGTTCTAACTCCCGTGAAAACACCACGGTAGTCGC TACCATCAACGCGGCAGGGACGGCCACACCACCTCTGATAATCTTCAAAG GCCAACGTGTGCAAGCGGCGTGGCTCGGGAACGGTGGGCCTCCGGGGTCA AAATTTGCCGCCACTGACTCCTCGTTTATGCAGGGCGCTGTATTCGTGAA CTACATCACGGATTTCCATAACTTCATCGTGGAGAACGGCTTGGCGGACG GCAAACCGCACATTCTCGTGCTTGACGGCCACGCGTCGCACGTGAACCTC GACGTTATCCAGCTAGCCATGACCCTCAATATTGAGCTCTTTCAACTGCC GTCTCACTCCTCCCACATGACCCAGCCGTTAGATGTAGCGGCTTTCGGGT GTTTCAAGAAGGCAGTGACCGCGGTCCTCACAAGCTTTCCGCTTCAGCAC GGTGGTAAGATGCCGGGGGAATCCGACATGGCCGGGGTGGTCAAGGATGC GTGGGCGGCGAGCTTTACGGTGCCACAGATCAAGGCTTCATTCGAGGGAG CAGGACTGTCGCCTGTGAACATGGACCGGGCGATCAACAGGCTTCACGGA ACGGGGAAGAGAAAAGCTCGCCCGGACGATCGCCCGCCGCTGGCCGACAT TCCTTCTGGCGATCACGGAGGAAGAGTTGAATTCTTCGCTCGGCCCGCGT GCCGCGAACAAGCTACA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig8954:7627..9243-

>mRNA_A-nodosum_M_contig8954.1.1 ID=mRNA_A-nodosum_M_contig8954.1.1|Name=mRNA_A-nodosum_M_contig8954.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at A-nodosum_M_contig8954:7627..9243- (Ascophyllum nodosum dioecious)
ATGCGTCGGTCTAAGGCGGACGTTGTGCGAGCGCAAGCGGCGGTTGATGC
GGTTCGAAGCGGTGCGATGAGCTACCGAGTTGCTTCCGAGGCGTACTCTA
TTTCTGTGAGCTCAATCGCCAAGCGCTTGAAGGGCAAAGTGAGGATGGAT
GCATCAGTTGGCGCTGGTACAGTTCTTACTCTGGAAGAGGAAAATTCGCT
GGAAGACGCCTTGATTTGGGCGGCACATCGACACCTCGGAGTTGGTCGAT
TAGAGCTCAAACAAGCGGTAACGAAGCTGTGCAACGACGGCCGGCTTGTA
CCTTGGGCTCGTGATACTGGTCCTGGGCGAAAGTGGTTGGATCTCTTCCT
CAGGCGGCATCCGCGACTCTCGGAGCGCAGCTGCCGCATCTACGAAGCGA
ACCGTATTACCGCTGACGATGAACCGCGACTGAGGTCATTTTGTGCCAAT
TGGCAGGAGCTCATCACCAGGCTGCAGCCGCAGCCGGATCATATCTGGAA
TATAGACGAGACAGGTGCGTTGACTGTAGAACCAGCGCAGGTACTCCCTG
CCTCCCTGGGGCAAAAGGTGGTCGGTACCAAGCGTTCTAACTCCCGTGAA
AACACCACGGTAGTCGCTACCATCAACGCGGCAGGGACGGCCACACCACC
TCTGATAATCTTCAAAGGCCAACGTGTGCAAGCGGCGTGGCTCGGGAACG
GTGGGCCTCCGGGGTCAAAATTTGCCGCCACTGACTCCTCGTTTATGCAG
GGCGCTGTATTCGTGAACTACATCACGGATTTCCATAACTTCATCGTGGA
GAACGGCTTGGCGGACGGCAAACCGCACATTCTCGTGCTTGACGGCCACG
CGTCGCACGTGAACCTCGACGTTATCCAGCTAGCCATGACCCTCAATATT
GAGCTCTTTCAACTGCCGTCTCACTCCTCCCACATGACCCAGCCGTTAGA
TGTAGCGGCTTTCGGGTGTTTCAAGAAGGCAGTGACCGCGGTCCTCACAA
GCTTTCCGCTTCAGCACGGTGGTAAGATGCCGGGGGAATCCGACATGGCC
GGGGTGGTCAAGGATGCGTGGGCGGCGAGCTTTACGGTGCCACAGATCAA
GGCTTCATTCGAGGGAGCAGGACTGTCGCCTGTGAACATGGACCGGGCGA
TCAACAGGCTTCACGGAACGGGGAAGAGAAAAGCTCGCCCGGACGATCGC
CCGCCGCTGGCCGACATTCCTTCTGGCGATCACGGAGGAAGAGTTGAATT
CTTCGCTCGGCCCGCGTGCCGCGAACAAGCTACA
back to top