mRNA_A-nodosum_M_contig895.44.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig895.44.1
Unique NamemRNA_A-nodosum_M_contig895.44.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig895.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig895contigA-nodosum_M_contig895:195246..198623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size984
Hectar predicted targeting categorysignal anchor
Exons3
Cds size507
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870323.0346072-UTR-A-nodosum_M_contig895:195245..1952741680870323.0346072-UTR-A-nodosum_M_contig895:195245..195274Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig895 195246..195274 -
1680870323.050818-UTR-A-nodosum_M_contig895:196812..1971901680870323.050818-UTR-A-nodosum_M_contig895:196812..197190Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig895 196813..197190 -
1680870323.060725-UTR-A-nodosum_M_contig895:198046..1980541680870323.060725-UTR-A-nodosum_M_contig895:198046..198054Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig895 198047..198054 -
1680870323.0920658-UTR-A-nodosum_M_contig895:198561..1986231680870323.0920658-UTR-A-nodosum_M_contig895:198561..198623Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig895 198562..198623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870323.074333-CDS-A-nodosum_M_contig895:198054..1985611680870323.074333-CDS-A-nodosum_M_contig895:198054..198561Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig895 198055..198561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig895.44.1prot_A-nodosum_M_contig895.44.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig895 198055..198561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig895.44.1

>prot_A-nodosum_M_contig895.44.1 ID=prot_A-nodosum_M_contig895.44.1|Name=mRNA_A-nodosum_M_contig895.44.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=169bp
MRTMAMMCPLLLLLLMFLATKVKRMCLASPREKEGGDRGRCDADARPVLL
RRLLLLLLLLLGFLGSLMPMMVVVLVGEGDTAERRCHSGVWGGIMTVEGW
WKESRQQQQRREMAAARAGCGRCQGEGRWHRCRCLSRPRRLIGIRSLMGT
RTGMTSSSSKKKQTTRPL*
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mRNA from alignment at A-nodosum_M_contig895:195246..198623-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig895.44.1 ID=mRNA_A-nodosum_M_contig895.44.1|Name=mRNA_A-nodosum_M_contig895.44.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3378bp|location=Sequence derived from alignment at A-nodosum_M_contig895:195246..198623- (Ascophyllum nodosum dioecious)
CGGAGAAGTCCGGGGCAACAGAAGCAGCAGCAGCGTCAGCAGCAGCAGTG
ACTTGCAGGACGATGAGGACGATGGCGATGATGTGTCCTCTGCTTCTGCT
GTTGCTGATGTTCCTGGCGACGAAGGTCAAGAGGATGTGCTTGGCGAGCC
CTCGGGAGAAGGAAGGCGGAGATCGCGGCCGTTGCGACGCAGACGCGCGA
CCGGTTTTGCTACGGCGGCTACTGCTCCTGCTTCTACTGCTGCTGGGTTT
TCTTGGTTCCCTGATGCCGATGATGGTAGTGGTGTTGGTGGGAGAAGGGG
ACACAGCAGAGAGGCGTTGCCACAGCGGGGTTTGGGGGGGGATAATGACG
GTGGAGGGGTGGTGGAAGGAGTCACGGCAGCAGCAGCAGCGGCGAGAAAT
GGCGGCGGCGAGAGCTGGGTGCGGGAGATGCCAAGGAGAGGGTCGGTGGC
ATCGATGCCGTTGTTTATCTCGTCCTCGTCGTCTGATAGGGATCAGGAGC
CTGATGGGGACGAGGACGGGGATGACGAGTTCCAGTTCCAAGAAGAAGCA
GACGACGAGACCACTCTAGACGCTGAGGTGGGGGGGGGTTGAGGGGGGTG
ATGGATTGGGGTCGAACCCTCGTGTCGGCAGCTTTTTCCGCCCCCTTCTA
AGCATATATGCATAAAATATATATAATATGAATCGCAAGCGCCGACAACT
GTGTAGCATGTACAATAGTTTGTGTTGGGATGGGCGGGGGCGGGGGGGGG
GGGGGTGATGAGCGTTGGCTCTGTTTGTCCGTGGGGTGTAATCCGGTCCG
CGTGCACTCTGTTTGACGCTTTTTCATCCGTGTAAGTTGGCGTTCTGTTT
GCTGCTTTTGTCGTACTCAGGACCAAGCGCGTGTCTGTAGCAACGTGTGT
CGTAAGTCCTGGCACCGAATGTTTTTTTGTTTTTTTGTATGATGTGTGTT
GTGGTGTGCGTGCGCCTCTTGCCCTTAGTGTGATGTAATGTACTGTAATG
TAATGTAAACCCTACTGCGTAAGTGTAATGCAAACCCTACTGCGTACGTG
TAATGTAAACCCTAATGTGTAAGTGTAATGTAAACCCTACTGCGTAAGTG
TAATGCAAACCCTACTGCGTAAGTAGTTGGCGAAAAAAACAAGTGTACAC
ACATGGTCGTCTTGGAAAACCTTACGCTTTCGGGAGACGGAGAAATTGTT
GAGCAAGAATAGCTGAAACCGACGGAGTTCTTGATGGCAGGAGGTGAAGC
TCCCATTCTTCTCTCTATTTTCAAGTGTTTCTGTGCTCACCGTTTGTCGC
CGCTCTCTCTCCCTTTGCTATTGCTTGTTGTTAAGTATTCCTTTTCGAGA
GCACGAGTTTTTTTTAATGGACCTGGGGTTTTCCCATATTTTTTGTTTTG
TTTTTGTTTTTTGTTTTTTAACCTGTGGAGCAGGCCGCCCTCGCGGGGGT
AGAAGGCGGCGGAGATGACGACACGGGGGCCGAGATCGCCGCTCTTCAGG
CGGAGGCAGACCTCCCGATCGAACAACTCATGGCGGCCTACGCCGCTGCC
GCGTCAGACTCGTCGTGCTTGGAGGAGGAGGAGGAGGAAGATGAAGCGGG
GGGTGCGGATAGGGTTGCCGAGGGCACGGGGTTCTTGGTGGGGCCAAGCA
GCGGCGCAGACGAGATCGGTGATCATGGCGATGACGGCGATGACGACGAG
TACGAGATAGAGGAGGAGGTGGTGGACGACGAAGCCACCCTGGAGGAGGA
GGAGCGGAGGGCTAAGGAGGAAGGGGACGAGGGAAGGAAGGACGGGAACG
GCCGTGCCGAGGTGGGATAGCGAAGAAAAATGTCCGGAAGTACCTACAGT
CAGTTGTGTACCGTTACTTTTGTGTGTCTTTCACACCAGCAGTCGTACGT
GTAGTACATACAGTATTAATATCTTTATGGCTTTATAGCTTTATAGGGCT
ATTACCATATCACCTATTATATTATATTATATTATGTTATCACCTATTAC
TAGCTATTACTAATACTATCTATTACTATCGCCACTATAATAGTATTGTT
CTTACAAACGTCTTGATCGATTCGCGTGAGTCTTTCTGTTGGTGATCGAT
TGTATGATATTCAGCATATATTGATATACCAGCATATATATATACTTGTA
ATATATATATATACTGTGTAATACATAGATACTTGTATATACATGTGTAG
ATAGGTGCGGTCGTTCTCCAAAGCTTGGAGAGAGATACCCGCGTGTTATG
TATATTAATGGGTATGGGGTTACTCCTCCTCGTTGCGCATTATCTTATTG
ATATAGTATAGTATAGTATATAGTATATAGTATAGTATAGGGGGCAGAGA
ATGAGATCTGCTTTGTAGCACTCGTATTGATGGGAACGTCCCCTTTCAAT
GGTAAACTGTTGCGTGCTTGATTGATCTCTTAATATCCCTTAATACCAAT
AATAGTATATAGTATAGGCTGTAGTATTTATAGTATAATGGGTGTGGGAA
GAGAAAAGCGCACATTATTTGGGCGATGAGGTTGCCCATAATAGTATAGG
CTTAGGCCGCATCTTTTGCTTCAACTACCTTGAGGAAGATACTGGCCCCG
TGCCAGACCTGCAAGGGGTGAACGCAATCGGTACGCAATTGCGTGAACCG
TTAAACTCGGGAAGGACCCGATGGCGGCTGACGGTTTAGATGGATGCCTT
CGCGGAAAGCGCGAGGAACGCCATCGGTACGCGATTGCGTGAAGCGTTAA
ACTCGGGAATGACCCGATGGCAGCTGACGGTTTAGATGGACACCTTGTTA
ATGGTATATATAGTATATATAGTATCCGTGGTATCTATAGTATCTATGGT
ATCTATAGTTTCTATGGTATCTATGGTATCTATAGTATCCATAGTATCTA
TAGTATCCATAGTATCTATAGTATCTGTAGTATCTATGGTATCTATAGTA
TCTATGGTATCTATAGTATCTATGGTATCTATGGTATCTATAGTATCTAT
GGTATCTATCTCTGTCATAGTCTATATCGCGGAAAGTGCGAGGAAGAAGA
GGAGCCCGTTAGTAAGCACCAGGTTCAGCCTAGCTGGGAATGAGCAGACT
GACGCGGGGGGCGGGACGGCCGAACCTGTCTCGCCCGCAAGACCAAAGTC
TCAGGCGCCAACAGGAACAGGAAAAACAAAAACATACCTGGTAGTCCTGT
TCAGCTTACCACGAGCAGGGTTGGGAACCACACATACACATATATACGCA
CATTGTGCAATGGTACGACTTACGCCATTGTGCATTGTTACGTGCTGTGT
CGCGTGTCACATGCGATGTTATGTCATGGCGCGCGCGTTCTTTTTTAAGG
TGAGAGCCCTCGAAGCGGACCAAGAACT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig895:195246..198623-

>mRNA_A-nodosum_M_contig895.44.1 ID=mRNA_A-nodosum_M_contig895.44.1|Name=mRNA_A-nodosum_M_contig895.44.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=507bp|location=Sequence derived from alignment at A-nodosum_M_contig895:195246..198623- (Ascophyllum nodosum dioecious)
ATGAGGACGATGGCGATGATGTGTCCTCTGCTTCTGCTGTTGCTGATGTT
CCTGGCGACGAAGGTCAAGAGGATGTGCTTGGCGAGCCCTCGGGAGAAGG
AAGGCGGAGATCGCGGCCGTTGCGACGCAGACGCGCGACCGGTTTTGCTA
CGGCGGCTACTGCTCCTGCTTCTACTGCTGCTGGGTTTTCTTGGTTCCCT
GATGCCGATGATGGTAGTGGTGTTGGTGGGAGAAGGGGACACAGCAGAGA
GGCGTTGCCACAGCGGGGTTTGGGGGGGGATAATGACGGTGGAGGGGTGG
TGGAAGGAGTCACGGCAGCAGCAGCAGCGGCGAGAAATGGCGGCGGCGAG
AGCTGGGTGCGGGAGATGCCAAGGAGAGGGTCGGTGGCATCGATGCCGTT
GTTTATCTCGTCCTCGTCGTCTGATAGGGATCAGGAGCCTGATGGGGACG
AGGACGGGGATGACGAGTTCCAGTTCCAAGAAGAAGCAGACGACGAGACC
ACTCTAG
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