mRNA_A-nodosum_M_contig895.21.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig895.21.1
Unique NamemRNA_A-nodosum_M_contig895.21.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig895.21.1 vs. uniprot
Match: A0A0B7BKC8_9EUPU (OTU domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7BKC8_9EUPU)

HSP 1 Score: 65.9 bits (159), Expect = 7.670e-11
Identity = 34/109 (31.19%), Postives = 60/109 (55.05%), Query Frame = 1 
Query:   31 ENNCLFHAVSMALWGVNDRNNMLRKLASMVLESHHGLLKRIFTRGKRKIYASGPHEPRTDKQINDEWEPIWKSVMTPGIPT----------DWFVFFILSNILRRPVVM 327
            + NCL HA S+A+WGV D  N LR L  M ++++H   KR +++  R + +   ++P     +N EW+ + +S+   G  +          +    +IL+NILRRP+++
Sbjct:   28 DGNCLLHAASVAVWGVEDSQNTLRDLMLMTVKNNHNFKKRWWSQLMRNLQSLEINQPEV---LNREWDDVIRSISDLGSSSLSIAVPHRFLEGIHIYILANILRRPIII 133
[Close]
BLAST of mRNA_A-nodosum_M_contig895.21.1 vs. uniprot
Match: UPI001BB12A6D (tumor necrosis factor alpha-induced protein 3-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB12A6D)

HSP 1 Score: 64.7 bits (156), Expect = 7.540e-10
Identity = 42/123 (34.15%), Postives = 62/123 (50.41%), Query Frame = 1 
Query:    4 QLRALDNHGENNCLFHAVSMALWGVNDRNNMLRKLASMVLESHHGLLKRIFTRGKRKIYASGPHEPRTDKQIND-EWEPIWKSVM-----------TPGIPTDW---FVFFILSNILRRPVVM 327
            +L  L+  G+ NCL HA+S+ALWGV D +  LRK+   V+            R +R +Y +  H P    + N  EW   WK V+           T G+P +    F  FI++NILRRP+++
Sbjct:  107 KLYPLNATGDGNCLLHAISLALWGVEDTDLWLRKVLHTVMRGEFAGANESRWRRERNLYDA-KHMPGQGFRYNTKEWTAEWKIVVDIASPERRIDQTLGLPYECLEEFHIFIMANILRRPIIV 228
[Close]
BLAST of mRNA_A-nodosum_M_contig895.21.1 vs. uniprot
Match: A0A8J9VBF9_BRALA (OTUD7B protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9VBF9_BRALA)

HSP 1 Score: 62.0 bits (149), Expect = 6.550e-9
Identity = 36/122 (29.51%), Postives = 59/122 (48.36%), Query Frame = 1 
Query:    7 LRALDNHGENNCLFHAVSMALWGVNDRNNMLRKLASMVLESHHGLLKRIFTRGKRKIYASGPHEPRTDKQIND-EWEPIWKSVM--------------TPGIPTDWFVFFILSNILRRPVVM 327
            L A+   G+ NCL HAVS+ +WGV D+   LR+     ++   G L++ +   +R   A+ P  P         +W+  W +++              T   P + F  F+L+NILRRP+V+
Sbjct:   80 LTAIQTIGDGNCLLHAVSLYMWGVQDKKLNLRRYLDRAMQDDRGALRKRWAHQRRARDATVPGVPIGGVNYEPGQWDGEWNTMVQMASAAPNESEPNQTRYRPLEEFHIFVLANILRRPIVV 201
[Close]
BLAST of mRNA_A-nodosum_M_contig895.21.1 vs. uniprot
Match: A0A7M7HLL7_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7HLL7_STRPU)

HSP 1 Score: 62.0 bits (149), Expect = 6.660e-9
Identity = 39/123 (31.71%), Postives = 64/123 (52.03%), Query Frame = 1 
Query:    4 QLRALDNHGENNCLFHAVSMALWGVNDRNNMLRKLASMVLESHHGLLKRIFTRGKRKIYASGPHEPRTDKQIND-EWEPIWKSVM-----------TPGIPTDW---FVFFILSNILRRPVVM 327
            +L +L+  G+ NCL HA+S+ALWGV D +  LRK+   V++  +        R +R  + +  H P    + N  EW   W+ V+           T G+P +    F  F+++NILRRP+++
Sbjct:  107 KLYSLNATGDGNCLLHAISLALWGVEDTDLWLRKVLHSVMKGEYAEANERRWRRERNQFDT-THIPGQGFRYNTKEWSAEWQIVVDISSPERRLDQTMGLPYECLEEFHIFVMANILRRPIIV 228
[Close]
BLAST of mRNA_A-nodosum_M_contig895.21.1 vs. uniprot
Match: A0A1S3IPE0_LINUN (LOW QUALITY PROTEIN: tumor necrosis factor alpha-induced protein 3-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IPE0_LINUN)

HSP 1 Score: 59.7 bits (143), Expect = 4.310e-8
Identity = 40/122 (32.79%), Postives = 54/122 (44.26%), Query Frame = 1 
Query:    7 LRALDNHGENNCLFHAVSMALWGVNDRNNMLRKLASMVLESHHGLLKRIFTRGKRKIYASGPHEPRTDKQINDEWEPIW-------KSVMTPGIPTDWFVF--------FILSNILRRPVVM 327
            L A+   G+ NCL HAVS+ +WGV D    LR+L  + L    G  K    R  R+  A     P   +    EWE  W       K V  P    D   +        F+L+NILRRP+++
Sbjct:   97 LYAVSTTGDGNCLLHAVSLGMWGVQDETLFLRRLIYVTLVDDEGTGK-FKQRWMRERAAQNEDIPGNFRYNTGEWEREWDTVVRIAKDVKKPNRCADELPYESLEEAHIFVLANILRRPIII 217
[Close]
BLAST of mRNA_A-nodosum_M_contig895.21.1 vs. uniprot
Match: UPI00160425CD (tumor necrosis factor alpha-induced protein 3-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00160425CD)

HSP 1 Score: 58.9 bits (141), Expect = 7.950e-8
Identity = 39/122 (31.97%), Postives = 56/122 (45.90%), Query Frame = 1 
Query:    7 LRALDNHGENNCLFHAVSMALWGVNDRNNMLRKLASMVLESHHGLLKRIFTRGKRKIYASGPHEP-----RTDKQINDEWEPIWKSV----------MTPGIPTDWFVFFILSNILRRPVVM 327
            L AL   G+ NCL HAVS+ +WGV D+   LR+     ++   G L+  +   +R   A  P  P         Q N EW  + +             T   P + F  F+L+NILRRP+V+
Sbjct:   76 LTALQTIGDGNCLPHAVSLYMWGVQDKKLSLRRYLDCTMQEDGGALRERWAHQRRARDAVVPGVPIGGVDYAPGQWNGEWTTMVQMASAAPNESEPNQTRYRPLEEFHIFVLANILRRPIVV 197
[Close]
BLAST of mRNA_A-nodosum_M_contig895.21.1 vs. uniprot
Match: UPI00148A5616 (tumor necrosis factor alpha-induced protein 3-like n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A5616)

HSP 1 Score: 57.4 bits (137), Expect = 1.330e-7
Identity = 37/122 (30.33%), Postives = 61/122 (50.00%), Query Frame = 1 
Query:    7 LRALDNHGENNCLFHAVSMALWGVNDRNNMLRKLASMVLESHHGLLKRIFTRGKRKIYASGPHEPRTDKQIND------EWEPIWKSV--------MTPGIPT-DWFVFFILSNILRRPVVM 327
            L  +   G+ NCL HAVS+ LWG+ DR+ +LR+L  + L +     K+ F R   +   +   +P  + ++N       EW  I KS          +P   T +    ++L+NILRRP+++
Sbjct:   23 LYPIKTRGDGNCLLHAVSLFLWGMEDRDLLLRRLLYLSLANDD---KKFFRRWLTQYRNTMMDQPEFELELNSKCGTWREWTNILKSAEDNPVDQGTSPNFHTLEGIHLYVLANILRRPIIV 141
[Close]
BLAST of mRNA_A-nodosum_M_contig895.21.1 vs. uniprot
Match: A0A8B8EEN0_CRAVI (tumor necrosis factor alpha-induced protein 3-like isoform X1 n=8 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8EEN0_CRAVI)

HSP 1 Score: 57.8 bits (138), Expect = 2.030e-7
Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = 1 
Query:    4 QLRALDNHGENNCLFHAVSMALWGVNDRNNMLRKLASMVLESHHGLLKRI--FTRGKRKIYASGPHEPRTD-KQINDEWEPIWKSVMTPGIPTDWFVF--------FILSNILRRPVVM 327
            +L  +   G+ NCL HAVS+ LWGV DR+ +LR+L  + L +    + R     + +  +  S   +   D K ++ EWE I KS  T   PT+   +        ++L+NILRRP+++
Sbjct:  133 KLCPVKTRGDGNCLLHAVSLFLWGVEDRDLLLRRLLYLTLANDPKNMYRTRWLMQYRNTVLDSPDLQLSLDSKDMDAEWESILKS--TEDNPTEGSNYPSLEGIHLYVLANILRRPIIV 249
[Close]
BLAST of mRNA_A-nodosum_M_contig895.21.1 vs. uniprot
Match: K1PNG8_CRAGI (Tumor necrosis factor, alpha-induced protein 3 n=6 Tax=Crassostrea gigas TaxID=29159 RepID=K1PNG8_CRAGI)

HSP 1 Score: 57.8 bits (138), Expect = 2.030e-7
Identity = 37/121 (30.58%), Postives = 61/121 (50.41%), Query Frame = 1 
Query:    7 LRALDNHGENNCLFHAVSMALWGVNDRNNMLRKLASMVLESHHGLLKRIFTRGKRKIYASGPHEPRTDKQIND-----EWEPIWKSV--------MTPGIPT-DWFVFFILSNILRRPVVM 327
            L  +   G+ NCL HAVS+ LWG+ DR+ +LR+L  + L +     K+ F R   +   +   +P  + ++N      EW  I KS          +P   T +    ++L+NILRRP+++
Sbjct:  131 LYPIKTRGDGNCLLHAVSLFLWGMEDRDLLLRRLLYLSLANDD---KKFFRRWLTQYRNTMMDQPEFELELNSKDMDREWTNILKSAEDNPVDQGTSPNFHTLEGIHLYVLANILRRPIIV 248
[Close]
BLAST of mRNA_A-nodosum_M_contig895.21.1 vs. uniprot
Match: A0A6J8C5R0_MYTCO (TNFAIP3 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8C5R0_MYTCO)

HSP 1 Score: 57.0 bits (136), Expect = 3.770e-7
Identity = 39/122 (31.97%), Postives = 56/122 (45.90%), Query Frame = 1 
Query:    7 LRALDNHGENNCLFHAVSMALWGVNDRNNMLRKLASMVLESHHGLLKRIFTRG---KRKIYASGPHEPRTDKQINDEWEPIWKSVMTPGI---------PTDWFV---FFILSNILRRPVVM 327
            L  L   G+ NCL HAVSM LWG+ D N +LR+L  + L       K    R    +R++    P         N EWE  W+++    I         P D       ++L+NILRRP+++
Sbjct:   94 LYPLKTKGDGNCLLHAVSMCLWGLEDENLLLRRLLYVSLVQDTSTQKNFQRRWLLRQRRMNQERPFGFNAHLDKN-EWEREWETITNAAIDEQNREAFLPYDTLEAVHLYVLANILRRPIIV 214
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig895.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B7BKC8_9EUPU7.670e-1131.19OTU domain-containing protein n=1 Tax=Arion vulgar... [more]
UPI001BB12A6D7.540e-1034.15tumor necrosis factor alpha-induced protein 3-like... [more]
A0A8J9VBF9_BRALA6.550e-929.51OTUD7B protein n=1 Tax=Branchiostoma lanceolatum T... [more]
A0A7M7HLL7_STRPU6.660e-931.71Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
A0A1S3IPE0_LINUN4.310e-832.79LOW QUALITY PROTEIN: tumor necrosis factor alpha-i... [more]
UPI00160425CD7.950e-831.97tumor necrosis factor alpha-induced protein 3-like... [more]
UPI00148A56161.330e-730.33tumor necrosis factor alpha-induced protein 3-like... [more]
A0A8B8EEN0_CRAVI2.030e-732.77tumor necrosis factor alpha-induced protein 3-like... [more]
K1PNG8_CRAGI2.030e-730.58Tumor necrosis factor, alpha-induced protein 3 n=6... [more]
A0A6J8C5R0_MYTCO3.770e-731.97TNFAIP3 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8C5R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig895contigA-nodosum_M_contig895:50140..50466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7668.SPU_000649-tr
Preferred nameTNFAIP3
PFAMsOTU,zf-A20
Model size327
Max annot lvl33208|Metazoa
KEGG koko:K11859
KEGG Pathwayko04064,ko04217,ko04621,ko04657,ko04668,ko05162,ko05169,map04064,map04217,map04621,map04657,map04668,map05162,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000209,GO:0000302,GO:0000323,GO:0001775,GO:0001776,GO:0001782,GO:0001817,GO:0001818,GO:0001922,GO:0001932,GO:0001933,GO:0001959,GO:0002020,GO:0002218,GO:0002221,GO:0002237,GO:0002252,GO:0002253,GO:0002260,GO:0002263,GO:0002285,GO:0002312,GO:0002313,GO:0002315,GO:0002335,GO:0002366,GO:0002376,GO:0002507,GO:0002520,GO:0002521,GO:0002631,GO:0002632,GO:0002634,GO:0002637,GO:0002676,GO:0002677,GO:0002682,GO:0002683,GO:0002684,GO:0002694,GO:0002695,GO:0002697,GO:0002698,GO:0002700,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0002819,GO:0002822,GO:0002831,GO:0002832,GO:0003674,GO:0003824,GO:0004842,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005773,GO:0005829,GO:0006355,GO:0006464,GO:0006469,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006955,GO:0006979,GO:0007154,GO:0007162,GO:0007165,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008284,GO:0008285,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009636,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010468,GO:0010470,GO:0010506,GO:0010507,GO:0010556,GO:0010563,GO:0010604,GO:0010605,GO:0010646,GO:0010648,GO:0010803,GO:0010941,GO:0016043,GO:0016567,GO:0016579,GO:0016740,GO:0016787,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019783,GO:0019787,GO:0019899,GO:0019900,GO:0019941,GO:0022407,GO:0022408,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030097,GO:0030098,GO:0030154,GO:0030155,GO:0030163,GO:0030183,GO:0030522,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031329,GO:0031330,GO:0031331,GO:0031347,GO:0031348,GO:0031349,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031593,GO:0031664,GO:0031665,GO:0032088,GO:0032101,GO:0032102,GO:0032182,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032479,GO:0032480,GO:0032495,GO:0032496,GO:0032501,GO:0032502,GO:0032651,GO:0032652,GO:0032663,GO:0032675,GO:0032680,GO:0032691,GO:0032692,GO:0032703,GO:0032715,GO:0032720,GO:0033036,GO:0033365,GO:0033554,GO:0033673,GO:0033993,GO:0034103,GO:0034104,GO:0034114,GO:0034115,GO:0034121,GO:0034122,GO:0034135,GO:0034136,GO:0034139,GO:0034140,GO:0034143,GO:0034144,GO:0034147,GO:0034148,GO:0034599,GO:0034613,GO:0034614,GO:0035556,GO:0035690,GO:0035871,GO:0035872,GO:0036211,GO:0036459,GO:0042113,GO:0042127,GO:0042176,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042542,GO:0042592,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043122,GO:0043124,GO:0043130,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043433,GO:0043549,GO:0043621,GO:0043632,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045089,GO:0045124,GO:0045184,GO:0045321,GO:0045732,GO:0045736,GO:0045765,GO:0045779,GO:0045786,GO:0045824,GO:0045859,GO:0045936,GO:0045995,GO:0046649,GO:0046677,GO:0046850,GO:0046851,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048585,GO:0048660,GO:0048662,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050678,GO:0050679,GO:0050688,GO:0050691,GO:0050727,GO:0050728,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050866,GO:0050869,GO:0050896,GO:0051090,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051250,GO:0051252,GO:0051259,GO:0051338,GO:0051348,GO:0051603,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060255,GO:0060548,GO:0060759,GO:0061041,GO:0061043,GO:0061578,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070301,GO:0070423,GO:0070424,GO:0070425,GO:0070428,GO:0070429,GO:0070432,GO:0070433,GO:0070530,GO:0070536,GO:0070587,GO:0070646,GO:0070647,GO:0070663,GO:0070664,GO:0070727,GO:0070887,GO:0070936,GO:0071108,GO:0071216,GO:0071219,GO:0071222,GO:0071236,GO:0071310,GO:0071396,GO:0071704,GO:0071840,GO:0071900,GO:0071901,GO:0071947,GO:0072573,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0080134,GO:0090289,GO:0090291,GO:0097237,GO:0101005,GO:0140030,GO:0140096,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901652,GO:1901698,GO:1901700,GO:1901701,GO:1902041,GO:1902042,GO:1902531,GO:1902532,GO:1903034,GO:1903320,GO:1903321,GO:1903362,GO:1903364,GO:1903506,GO:1903555,GO:1903556,GO:1904029,GO:1904030,GO:1904035,GO:1904036,GO:2000026,GO:2000027,GO:2000112,GO:2000345,GO:2000347,GO:2000348,GO:2000349,GO:2000351,GO:2000352,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons1
Evalue1.09e-09
EggNOG OGsKOG4345@1|root,KOG4345@2759|Eukaryota,39K3I@33154|Opisthokonta,3BHSV@33208|Metazoa,3CZKN@33213|Bilateria
EC3.4.19.12
DescriptionTumor necrosis factor, alpha-induced protein 3
Cds size327
COG categoryT
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870323.2398455-CDS-A-nodosum_M_contig895:50139..504661680870323.2398455-CDS-A-nodosum_M_contig895:50139..50466Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig895 50140..50466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig895.21.1prot_A-nodosum_M_contig895.21.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig895 50140..50466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig895.21.1

>prot_A-nodosum_M_contig895.21.1 ID=prot_A-nodosum_M_contig895.21.1|Name=mRNA_A-nodosum_M_contig895.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=109bp
MQLRALDNHGENNCLFHAVSMALWGVNDRNNMLRKLASMVLESHHGLLKR
IFTRGKRKIYASGPHEPRTDKQINDEWEPIWKSVMTPGIPTDWFVFFILS
NILRRPVVM
back to top

mRNA from alignment at A-nodosum_M_contig895:50140..50466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig895.21.1 ID=mRNA_A-nodosum_M_contig895.21.1|Name=mRNA_A-nodosum_M_contig895.21.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at A-nodosum_M_contig895:50140..50466- (Ascophyllum nodosum dioecious)
ATGCAGCTGCGTGCGCTAGACAACCACGGCGAGAATAATTGCCTGTTTCA
TGCAGTATCTATGGCGCTGTGGGGAGTTAACGATAGAAATAATATGCTGC
GGAAGCTGGCGTCCATGGTGTTGGAGAGCCACCATGGCCTTCTGAAGCGG
ATCTTCACACGCGGGAAGCGGAAGATCTACGCCAGCGGGCCCCACGAACC
ACGCACCGACAAACAGATTAACGATGAATGGGAGCCAATCTGGAAATCCG
TAATGACACCCGGGATCCCCACGGACTGGTTTGTTTTCTTCATCTTGTCC
AACATCCTAAGGAGGCCTGTTGTCATG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig895:50140..50466-

>mRNA_A-nodosum_M_contig895.21.1 ID=mRNA_A-nodosum_M_contig895.21.1|Name=mRNA_A-nodosum_M_contig895.21.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=327bp|location=Sequence derived from alignment at A-nodosum_M_contig895:50140..50466- (Ascophyllum nodosum dioecious)
ATGCAGCTGCGTGCGCTAGACAACCACGGCGAGAATAATTGCCTGTTTCA
TGCAGTATCTATGGCGCTGTGGGGAGTTAACGATAGAAATAATATGCTGC
GGAAGCTGGCGTCCATGGTGTTGGAGAGCCACCATGGCCTTCTGAAGCGG
ATCTTCACACGCGGGAAGCGGAAGATCTACGCCAGCGGGCCCCACGAACC
ACGCACCGACAAACAGATTAACGATGAATGGGAGCCAATCTGGAAATCCG
TAATGACACCCGGGATCCCCACGGACTGGTTTGTTTTCTTCATCTTGTCC
AACATCCTAAGGAGGCCTGTTGTCATG
back to top