mRNA_A-nodosum_M_contig894.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig894.10.1
Unique NamemRNA_A-nodosum_M_contig894.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig894.10.1 vs. uniprot
Match: D7G7W3_ECTSI (Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W3_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.860e-41
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:    2 CGPCRMVGPIVDEVIDQYGAKLKVLELCTDENPKTVQDFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMDL 235
            CGPCRMVGPIVDEVI  +G KLKVLELCTDENPKTV +FKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMDL
Sbjct:   35 CGPCRMVGPIVDEVIADHGGKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMDL 112
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BLAST of mRNA_A-nodosum_M_contig894.10.1 vs. uniprot
Match: A0A6H5L318_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L318_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.240e-40
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 2 
Query:    2 CGPCRMVGPIVDEVIDQYGAKLKVLELCTDENPKTVQDFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMDL 235
            CGPCRMVGPIVDEVI  +G+KLKVLELCTDENPKTV +FKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMDL
Sbjct:  114 CGPCRMVGPIVDEVIADHGSKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMDL 191
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BLAST of mRNA_A-nodosum_M_contig894.10.1 vs. uniprot
Match: A0A1B7W1G5_APHFL (Thioredoxin n=5 Tax=Nostocales TaxID=1161 RepID=A0A1B7W1G5_APHFL)

HSP 1 Score: 103 bits (258), Expect = 2.540e-24
Identity = 45/76 (59.21%), Postives = 61/76 (80.26%), Query Frame = 2 
Query:    2 CGPCRMVGPIVDEVIDQYGAKLKVLELCTDENPKTVQDFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHM 229
            CGPCRMVGP+VDE+ DQYG KLKV+++ TDENP+    + IR+IPTLM+F D + V  VVGAVPK+ L ++++KH+
Sbjct:   32 CGPCRMVGPVVDEIADQYGEKLKVVKVNTDENPQIASQYGIRSIPTLMIFKDGQKVDMVVGAVPKTTLSTTVEKHL 107
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BLAST of mRNA_A-nodosum_M_contig894.10.1 vs. uniprot
Match: A0A1C9CAY7_9FLOR (Thioredoxin n=2 Tax=Ahnfeltia TaxID=28022 RepID=A0A1C9CAY7_9FLOR)

HSP 1 Score: 102 bits (254), Expect = 8.770e-24
Identity = 41/77 (53.25%), Postives = 62/77 (80.52%), Query Frame = 2 
Query:    2 CGPCRMVGPIVDEVIDQYGAKLKVLELCTDENPKTVQDFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMD 232
            CGPCRM+ P++DE+ D+YG  +KV+++ TD+NP T  ++ IR+IPTLM+F+D K V TV+GAVPKS L S++ K+++
Sbjct:   25 CGPCRMIAPVIDEIADEYGQSIKVVKINTDDNPSTATEYGIRSIPTLMIFNDGKRVDTVIGAVPKSTLASTLNKYLN 101
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BLAST of mRNA_A-nodosum_M_contig894.10.1 vs. uniprot
Match: A0A1G4NTQ2_9FLOR (Thioredoxin n=13 Tax=Nemaliales TaxID=2807 RepID=A0A1G4NTQ2_9FLOR)

HSP 1 Score: 99.0 bits (245), Expect = 2.070e-22
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 2 
Query:    2 CGPCRMVGPIVDEVIDQYGAKLKVLELCTDENPKTVQDFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMD 232
            CGPCRMV P+VDE+  +Y   +KV++L TDENP T  ++ IR+IPTLM+F D   V TV+GAVPKS L S++ K++D
Sbjct:   31 CGPCRMVAPVVDEIAHEYSESIKVVKLNTDENPSTATEYGIRSIPTLMIFKDGGRVDTVIGAVPKSTLASTLNKYLD 107
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BLAST of mRNA_A-nodosum_M_contig894.10.1 vs. uniprot
Match: A0A2W7B911_9CYAN (Thioredoxin n=1 Tax=Snowella sp. TaxID=2164131 RepID=A0A2W7B911_9CYAN)

HSP 1 Score: 98.6 bits (244), Expect = 2.660e-22
Identity = 40/76 (52.63%), Postives = 62/76 (81.58%), Query Frame = 2 
Query:    2 CGPCRMVGPIVDEVIDQYGAKLKVLELCTDENPKTVQDFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHM 229
            CGPCR+VGP+VDE+ +QY  ++KV+++ TDENP T  ++ IR+IPTLM+F D + V T+VGAVPK+ L +++++H+
Sbjct:   32 CGPCRLVGPVVDEIAEQYKGQVKVVKVNTDENPNTASNYGIRSIPTLMIFKDGQKVGTIVGAVPKTTLATTLEQHI 107
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BLAST of mRNA_A-nodosum_M_contig894.10.1 vs. uniprot
Match: A0A1Z1MJW2_SPYFI (Thioredoxin n=1 Tax=Spyridia filamentosa TaxID=196632 RepID=A0A1Z1MJW2_SPYFI)

HSP 1 Score: 98.2 bits (243), Expect = 4.670e-22
Identity = 41/76 (53.95%), Postives = 60/76 (78.95%), Query Frame = 2 
Query:    2 CGPCRMVGPIVDEVIDQYGAKLKVLELCTDENPKTVQDFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHM 229
            CGPCRMVGP+VDE+  +Y   +KV+++ TDENP T  ++ IR+IPTLM+FSD + + ++VGAVPKS L S ++K++
Sbjct:   33 CGPCRMVGPVVDEIAHEYSGMIKVVKMNTDENPTTASNYGIRSIPTLMIFSDGQKIDSIVGAVPKSTLSSKLEKYL 108
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BLAST of mRNA_A-nodosum_M_contig894.10.1 vs. uniprot
Match: M5DDH8_CHOCR (Thioredoxin n=1 Tax=Chondrus crispus TaxID=2769 RepID=M5DDH8_CHOCR)

HSP 1 Score: 97.4 bits (241), Expect = 7.120e-22
Identity = 41/76 (53.95%), Postives = 60/76 (78.95%), Query Frame = 2 
Query:    2 CGPCRMVGPIVDEVIDQYGAKLKVLELCTDENPKTVQDFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHM 229
            CGPCRM+ P+V E+ ++YG K+KV+E+ TDENP    ++ IR+IPTLM+F + K V TV+GAVPK+ L S++KK++
Sbjct:   31 CGPCRMIAPVVFEIANEYGDKIKVVEINTDENPSAATEYGIRSIPTLMVFVEGKKVETVIGAVPKTTLASTLKKYI 106
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BLAST of mRNA_A-nodosum_M_contig894.10.1 vs. uniprot
Match: A0A1G4NYS5_9FLOR (Thioredoxin n=1 Tax=Yamadaella caenomyce TaxID=259029 RepID=A0A1G4NYS5_9FLOR)

HSP 1 Score: 97.4 bits (241), Expect = 7.530e-22
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 2 
Query:    2 CGPCRMVGPIVDEVIDQYGAKLKVLELCTDENPKTVQDFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHM 229
            CGPCRMV P+VDE+ ++YG  +KV+++ TDENP T  ++ IR+IPTLM+F +   V TV+GAVPKS L S++ K++
Sbjct:   31 CGPCRMVAPVVDEIANEYGGSIKVVKINTDENPSTATEYGIRSIPTLMIFKNGGRVDTVIGAVPKSTLASTLNKYL 106
[Close]
BLAST of mRNA_A-nodosum_M_contig894.10.1 vs. uniprot
Match: A0A7M1VKQ9_SARSK (Thioredoxin n=1 Tax=Sarcopeltis skottsbergii TaxID=2765380 RepID=A0A7M1VKQ9_SARSK)

HSP 1 Score: 97.1 bits (240), Expect = 9.980e-22
Identity = 40/76 (52.63%), Postives = 60/76 (78.95%), Query Frame = 2 
Query:    2 CGPCRMVGPIVDEVIDQYGAKLKVLELCTDENPKTVQDFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHM 229
            CGPCRM+ P+VDE+ D+YG K+KV+++ TD+NP    ++ IR+IPTLM+F   + V TV+GAVPKS L +++KK++
Sbjct:   31 CGPCRMIAPVVDEIADEYGDKIKVVKINTDKNPSAATEYGIRSIPTLMIFIKGEKVDTVIGAVPKSTLANTLKKYI 106
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig894.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7W3_ECTSI2.860e-4192.31Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L318_9PHAE2.240e-4092.31Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A1B7W1G5_APHFL2.540e-2459.21Thioredoxin n=5 Tax=Nostocales TaxID=1161 RepID=A0... [more]
A0A1C9CAY7_9FLOR8.770e-2453.25Thioredoxin n=2 Tax=Ahnfeltia TaxID=28022 RepID=A0... [more]
A0A1G4NTQ2_9FLOR2.070e-2255.84Thioredoxin n=13 Tax=Nemaliales TaxID=2807 RepID=A... [more]
A0A2W7B911_9CYAN2.660e-2252.63Thioredoxin n=1 Tax=Snowella sp. TaxID=2164131 Rep... [more]
A0A1Z1MJW2_SPYFI4.670e-2253.95Thioredoxin n=1 Tax=Spyridia filamentosa TaxID=196... [more]
M5DDH8_CHOCR7.120e-2253.95Thioredoxin n=1 Tax=Chondrus crispus TaxID=2769 Re... [more]
A0A1G4NYS5_9FLOR7.530e-2253.95Thioredoxin n=1 Tax=Yamadaella caenomyce TaxID=259... [more]
A0A7M1VKQ9_SARSK9.980e-2252.63Thioredoxin n=1 Tax=Sarcopeltis skottsbergii TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig894contigA-nodosum_M_contig894:198934..199813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7W3
PFAMsThioredoxin
Model size880
Max annot lvl2759|Eukaryota
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004791,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006109,GO:0006810,GO:0006950,GO:0006979,GO:0006996,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009636,GO:0009657,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010319,GO:0010496,GO:0010497,GO:0010646,GO:0010647,GO:0015035,GO:0015036,GO:0016020,GO:0016043,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0016999,GO:0017001,GO:0017144,GO:0019222,GO:0019725,GO:0019904,GO:0030234,GO:0030312,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033554,GO:0034357,GO:0034599,GO:0042221,GO:0042592,GO:0042651,GO:0042737,GO:0042743,GO:0042744,GO:0043085,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0047134,GO:0048046,GO:0048509,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051716,GO:0055035,GO:0055114,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071840,GO:0071944,GO:0072593,GO:0080090,GO:0097237,GO:0098754,GO:0098772,GO:0098869,GO:1990748
Exons1
Evalue3.24e-40
EggNOG OGsCOG0526@1|root,KOG0910@2759|Eukaryota
Descriptionglycerol ether metabolic process
Cds size222
COG categoryO
BiGG ReactioniRC1080.CRv4_Au5_s14_g5492_t1
BRITEko00000,ko00001,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870321.6775174-UTR-A-nodosum_M_contig894:198933..1995751680870321.6775174-UTR-A-nodosum_M_contig894:198933..199575Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig894 198934..199575 -
1680870321.7633636-UTR-A-nodosum_M_contig894:199797..1998131680870321.7633636-UTR-A-nodosum_M_contig894:199797..199813Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig894 199798..199813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870321.6919131-CDS-A-nodosum_M_contig894:199575..1997971680870321.6919131-CDS-A-nodosum_M_contig894:199575..199797Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig894 199576..199797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig894.10.1prot_A-nodosum_M_contig894.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig894 199576..199797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig894.10.1

>prot_A-nodosum_M_contig894.10.1 ID=prot_A-nodosum_M_contig894.10.1|Name=mRNA_A-nodosum_M_contig894.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=74bp
MVGPIVDEVIDQYGAKLKVLELCTDENPKTVQDFKIRNIPTLMLFSDRKS
VMTVVGAVPKSALVSSIKKHMDL*
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mRNA from alignment at A-nodosum_M_contig894:198934..199813-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig894.10.1 ID=mRNA_A-nodosum_M_contig894.10.1|Name=mRNA_A-nodosum_M_contig894.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=880bp|location=Sequence derived from alignment at A-nodosum_M_contig894:198934..199813- (Ascophyllum nodosum dioecious)
GTGCGGGCCCTGCCGCATGGTGGGGCCCATCGTGGACGAAGTGATTGACC
AATATGGAGCGAAACTAAAGGTGCTGGAGCTGTGCACCGACGAGAACCCC
AAGACCGTACAAGATTTCAAGATACGGAACATCCCCACCCTCATGCTCTT
CAGCGATCGCAAGAGTGTAATGACCGTTGTTGGCGCGGTGCCCAAAAGCG
CCCTAGTGAGCTCGATTAAAAAACACATGGATCTGTGAGGAAACATTTAG
CCGTAAAAGGAGATCAGCGCCAGTGTTAGTCAGATGAATGAAGCATACCA
GGTATTTGATATTTAAAGAAAAATATTTGCAGGGAGGGGGAGGGGGGCGG
CGTGAGTTGGCAAGTGTACAAACCGGTACGTACACTTTCGCTTTGGTCGC
GATGGGAACACGCGGTAGGTACAGAACCAAATCTGCCACCGAAAATGTAT
TTCTTTCGTCCATTGGGATAAAAAGTGTAGGTAGGTTGTTGAAAGATTTA
TTCGTGTCCGTGAGCGATCTTTTGGTGCAACCATTATATCGGAAACGATT
ATCTCCATGATGATGGTGGAGGTGCGCCGCCAGGTAAAGCGAGGTCTGGA
TACCTTTTCGAGCTTCAACGCGATATGGCATCCACCATACGCCGTACTTT
CTAGATAGAACTTCGTACACTTAAAAGAAAAAGTACTGTTATATACTCTA
AAGTTTTTTCAACCTTTACGATGTTCTCTTCGACCTTACCGTCTTGTGCG
TCCCACGAAGGGTGTTGACGTTTGATACAGTAGCTACAAAGCGTTGCTGC
TGATTGATACCTGTAGTATTCCCAGAGTGTCAACTTCCAGAGTACAGTAT
ATAACATTTTGCAATACTGCAGGGGTTAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig894:198934..199813-

>mRNA_A-nodosum_M_contig894.10.1 ID=mRNA_A-nodosum_M_contig894.10.1|Name=mRNA_A-nodosum_M_contig894.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at A-nodosum_M_contig894:198934..199813- (Ascophyllum nodosum dioecious)
ATGGTGGGGCCCATCGTGGACGAAGTGATTGACCAATATGGAGCGAAACT
AAAGGTGCTGGAGCTGTGCACCGACGAGAACCCCAAGACCGTACAAGATT
TCAAGATACGGAACATCCCCACCCTCATGCTCTTCAGCGATCGCAAGAGT
GTAATGACCGTTGTTGGCGCGGTGCCCAAAAGCGCCCTAGTGAGCTCGAT
TAAAAAACACATGGATCTGTGA
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