mRNA_A-nodosum_M_contig8937.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig8937.1.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 200 bits (508), Expect = 5.010e-56 Identity = 97/184 (52.72%), Postives = 129/184 (70.11%), Query Frame = 1
Query: 1 LIYEAGDLELEMVPKSGVLPPGESLTINVTGTPVSNDVGGNLASTFTLISVGNASLLTGSSEGSVVQIIVVRSAFYLCQAFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 552
L ++A +L L+++P SG+LPPGE T+ VTG+P +VGG+L S F + SVG+ G+ + + + V SAFYLCQAF+YA+PV E + C QC +I+ A+G+DC+ PGATLASLPIR GYWR+S L+IH C+H AC GAT ++S DYC +GYQGP C VCT GFGRGAG +C
Sbjct: 782 LTFDADELSLQVLPSSGILPPGEDATVLVTGSPQGQEVGGDLVSQFVVTSVGS-----GTPDSTTGVDVEVYSAFYLCQAFEYAMPVDDENA--AFSCEQCVNIDGAEGLDCELPGATLASLPIREGYWRSSRESLSIHQCVHHTACVGATQISSAQDYCGEGYQGPYCTVCTEGFGRGAGNTC 958
BLAST of mRNA_A-nodosum_M_contig8937.1.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE) HSP 1 Score: 197 bits (501), Expect = 4.390e-55 Identity = 92/184 (50.00%), Postives = 131/184 (71.20%), Query Frame = 1
Query: 1 LIYEAGDLELEMVPKSGVLPPGESLTINVTGTPVSNDVGGNLASTFTLISVGNASLLTGSSEGSVVQIIVVRSAFYLCQAFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 552
L YEA DL L+++P SG+LPPGE++T+ +TG P+ +DVGG L + F + S G+ + + SS G ++ V+S FYLCQAF+YA+PV G++ C QCA+ + A+G+DC+ PGATLASLP+R GYWR+S+ L +H CL+SDAC G T ++S +DYC D Y+GP CAVC G G+ ++C
Sbjct: 780 LSYEADDLGLQVLPSSGILPPGENVTVAITGNPLQDDVGGVLVTRFVVTSAGSGTAESSSSTGVELE---VKSEFYLCQAFEYAMPVDGDDDDNDPVCLQCANFDGAEGLDCESPGATLASLPVREGYWRSSQESLVVHGCLNSDACAGGTQISSSDDYCKDCYEGPYCAVCAEGCCEGSSHTC 960
BLAST of mRNA_A-nodosum_M_contig8937.1.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 194 bits (492), Expect = 7.100e-54 Identity = 97/184 (52.72%), Postives = 124/184 (67.39%), Query Frame = 1
Query: 1 LIYEAGDLELEMVPKSGVLPPGESLTINVTGTPVSNDVGGNLASTFTLISVGNASLLTGSSEGSVVQIIVVRSAFYLCQAFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 552
L + A +L L+++P SG+LPPGE T+ VTG+P +VGG+L S F + SVG ++ T + V SAFYLCQAF+YA+PV GE+ + C QCA + A+G+DC+ PGATLASLP+R GYWR+ LTIH C S AC GA ++S DYC +GYQGP CAVC GFGRGAG SC
Sbjct: 777 LTFGADELFLQVLPSSGMLPPGEDATVLVTGSPQGQEVGGDLVSQFIVTSVGTSNSATDVD-------VEVYSAFYLCQAFEYAMPVDGEDT--TFSCEQCASVNGAEGLDCEIPGATLASLPVREGYWRSGGESLTIHQCSPSSACVGAAQISSAQDYCGEGYQGPYCAVCAEGFGRGAGNSC 951
BLAST of mRNA_A-nodosum_M_contig8937.1.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE) HSP 1 Score: 192 bits (488), Expect = 2.320e-53 Identity = 92/184 (50.00%), Postives = 131/184 (71.20%), Query Frame = 1
Query: 1 LIYEAGDLELEMVPKSGVLPPGESLTINVTGTPVSNDVGGNLASTFTLISVGNASLLTGSSEGSVVQIIVVRSAFYLCQAFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 552
L +EA DL L+++P SG+L PGE++T+ VTG+P+ DVGG+L S F + SVG++ T S S + V SAFYLCQAF+YAVPV G++ ++ C QC I+ A+GVDC+ PGATLASLP+R GYWR+ + T+ C+H+++C GAT +++ +DYC+ GY+GP CA C G+G G G +C
Sbjct: 287 LSHEAEDLGLQVLPSSGILSPGENVTVAVTGSPLRQDVGGDLVSRFAVSSVGSSGGGTAESSSSTGLELEVESAFYLCQAFEYAVPVDGDDDT-AVSCEQCVVIDGAEGVDCELPGATLASLPVREGYWRSGKESATVLACIHAESCAGATHVSTSDDYCSSGYEGPYCASCQAGYGTGIGNTC 469
BLAST of mRNA_A-nodosum_M_contig8937.1.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI) HSP 1 Score: 190 bits (483), Expect = 1.130e-52 Identity = 95/194 (48.97%), Postives = 132/194 (68.04%), Query Frame = 1
Query: 1 LIYEAGDLELEMVPKSGVLPPGESLTINVTGTPVSNDVGGNLASTFTLISVGNASLLTGSSEGSVVQIIV---VRSAFYLCQAFQYAVPVVGEEL-------VESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 552
L +EA DL L+++P SG+LPPGE++T+ VTG+P+ +DVGG L + F + S G+ G++E V V SAFYLCQAF+YA+PV E S+ C QCA+++ A+G+DC+ PGATLAS+P+R GYWR+S+ L +H CLHSDAC GAT ++S +DYC D Y+GP CAVC G G+ ++C
Sbjct: 427 LSHEAEDLGLQVLPSSGILPPGENVTVAVTGSPLQDDVGGVLVTRFVVTSAGS-----GTAESXXXXXXVELEVESAFYLCQAFEYAMPVDSEXXXXXXXPDAASVVCLQCANLDGAEGLDCESPGATLASMPVREGYWRSSQESLVVHGCLHSDACAGATQISSSDDYCKDCYEGPYCAVCAEGCCEGSSHTC 615
BLAST of mRNA_A-nodosum_M_contig8937.1.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI) HSP 1 Score: 189 bits (481), Expect = 2.130e-52 Identity = 93/184 (50.54%), Postives = 125/184 (67.93%), Query Frame = 1
Query: 1 LIYEAGDLELEMVPKSGVLPPGESLTINVTGTPVSNDVGGNLASTFTLISVGNASLLTGSSEGSVVQIIVVRSAFYLCQAFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 552
L YEA LEL P SGVL PG ++T+ VTG+P+ DVGG+L S F + SVG+ T S S + V SAFYLCQAF+YAVPV G++ ++ C QC I+ A+GVDC+ PGATLASLP+R GYWR+ + T+ C+H+++C GAT +++ DYC+ GY+GP CA C G+G G G +C
Sbjct: 736 LSYEADGLELSPFPSSGVLSPGGNVTVMVTGSPLQQDVGGDLVSRFAVSSVGSGGGGTAESSSSTGVELEVESAFYLCQAFEYAVPVDGDDDT-AVSCEQCVAIDGAEGVDCELPGATLASLPVREGYWRSGKESSTVLACIHAESCAGATQVSTAEDYCSSGYEGPYCASCQAGYGTGIGNTC 918
BLAST of mRNA_A-nodosum_M_contig8937.1.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 186 bits (473), Expect = 2.550e-51 Identity = 94/184 (51.09%), Postives = 125/184 (67.93%), Query Frame = 1
Query: 1 LIYEAGDLELEMVPKSGVLPPGESLTINVTGTPVSNDVGGNLASTFTLISVGNASLLTGSSEGSVVQIIVVRSAFYLCQAFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 552
L YEA L+L +P SGVLPPG ++TI+VTG DVGG L S F + +VG+ + ++ G ++ V +AFYLC+AF+YA+P GEE V C QC ++ A+GVDC+ PGAT SLP+R G+WR+SE L IH CLHSDAC GAT + + +DYC GY+GP CAVC G+G+G G +C
Sbjct: 815 LTYEAEKLDLNALPSSGVLPPGGNVTISVTGRSTEQDVGGGLISQFVVATVGSGTSADSATAGVGLE---VETAFYLCEAFEYAMPD-GEEQVT---CEQCVLLDGAEGVDCELPGATQTSLPVRAGHWRSSEESLVIHGCLHSDACVGATEIVTSDDYCDGGYEGPYCAVCAEGYGKGVGNTC 991
BLAST of mRNA_A-nodosum_M_contig8937.1.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI) HSP 1 Score: 108 bits (269), Expect = 6.460e-24 Identity = 69/199 (34.67%), Postives = 101/199 (50.75%), Query Frame = 1
Query: 1 LIYEAGDLELEMVPKSGVLPPGESLTINVTGTPVSNDVGGNLASTFTLISVGN-ASLLTGSSEGSVVQIIVVRS-------------AFYLCQAFQYAVPVVGEELVESLECRQCADIE-DAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 552
L E G +E + P +G+L PG S+T++V P+ +D G +F + ASL+ ++ VVQ + +F C++ Y E C C D++ D GV+CDE GAT +LPI+ GYWRAS + I C + DAC+G + + S +YC GY+GP CAVC G+GRG +C
Sbjct: 845 LSSEEGLMEWTVFPSTGLLLPGRSITLHVVTLPL-DDFNGEATVSFQADGMSPPASLVAEAAAAVVVQTTSLADDGEGETAAASFDVSFVHCESGTYWNNSCDPEGDSVSCCELCTDVDGDEDGVNCDENGATTRTLPIQSGYWRASLDSVYIRQCFNEDACQGGSIVASEQEYCNAGYEGPQCAVCASGYGRGVANAC 1042
BLAST of mRNA_A-nodosum_M_contig8937.1.1 vs. uniprot
Match: D7G5M2_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M2_ECTSI) HSP 1 Score: 102 bits (255), Expect = 4.470e-22 Identity = 68/199 (34.17%), Postives = 97/199 (48.74%), Query Frame = 1
Query: 1 LIYEAGDLELEMVPKSGVLPPGESLTINVTGTPVSNDVGGNLASTFTLISVGN-ASLLTGSSEGSVVQIIVVRS-------------AFYLCQAFQYAVPVVGEELVESLECRQCADIE-DAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 552
L E G +E + P +G+L PG S+T++V P S D G +F + ASL+ ++ VVQ + +F C++ Y E C C D+ D GV+C+ GAT +LP++PGYWRAS I C + DAC+G + S +YC GY+GP CAVC G+GRG +C
Sbjct: 229 LSSEEGLMEWTVFPSTGLLLPGRSITLHVVTLP-SEDFNGEATVSFQADGMSPPASLVAKAAAAVVVQTTSLADDGEGEIAAASFDVSFVHCESGTYWNNSCDPEGDSVSCCELCTDVGGDEDGVNCEIDGATTRTLPVQPGYWRASLDSDYIRQCFNEDACQGGRIVASEQEYCNAGYEGPQCAVCASGYGRGVANAC 426
BLAST of mRNA_A-nodosum_M_contig8937.1.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.680e-21 Identity = 57/153 (37.25%), Postives = 78/153 (50.98%), Query Frame = 1
Query: 97 PVSNDVGGNLASTFTLISVGNASLLTGSSEGSVVQIIVVRSAFYLCQAFQYAVPVVGEELVESLECRQCADIE-DAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 552
PV+ + T +L VG T S + S F C++ Y + ES C C D+ D GV+CDE GAT +LP++PGYWRAS + I C + DAC+G + + S +YC GY+GP CAVC G+GRG +C
Sbjct: 1013 PVAETAAAGVVQTTSLADVGERETATASFDVS----------FVRCESGTYWNNSCDAK--ESACCELCTDVGGDEDGVNCDENGATTRTLPVQPGYWRASLDSVYIRQCFNEDACQGGSIVASEQEYCNAGYEGPQCAVCAPGYGRGVANAC 1153 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8937.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8937.1.1 >prot_A-nodosum_M_contig8937.1.1 ID=prot_A-nodosum_M_contig8937.1.1|Name=mRNA_A-nodosum_M_contig8937.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=184bp LIYEAGDLELEMVPKSGVLPPGESLTINVTGTPVSNDVGGNLASTFTLISback to top mRNA from alignment at A-nodosum_M_contig8937:2239..3104+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig8937.1.1 ID=mRNA_A-nodosum_M_contig8937.1.1|Name=mRNA_A-nodosum_M_contig8937.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=866bp|location=Sequence derived from alignment at A-nodosum_M_contig8937:2239..3104+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig8937:2239..3104+ >mRNA_A-nodosum_M_contig8937.1.1 ID=mRNA_A-nodosum_M_contig8937.1.1|Name=mRNA_A-nodosum_M_contig8937.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at A-nodosum_M_contig8937:2239..3104+ (Ascophyllum nodosum dioecious)back to top |