mRNA_A-nodosum_M_contig893.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig893.5.1
Unique NamemRNA_A-nodosum_M_contig893.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig893.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig893contigA-nodosum_M_contig893:19631..25056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size651
Hectar predicted targeting categoryother localisation
Exons3
Cds size624
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870320.301055-CDS-A-nodosum_M_contig893:19630..199161680870320.301055-CDS-A-nodosum_M_contig893:19630..19916Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig893 19631..19916 -
1680870320.3129542-CDS-A-nodosum_M_contig893:20343..206401680870320.3129542-CDS-A-nodosum_M_contig893:20343..20640Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig893 20344..20640 -
1680870320.3240504-CDS-A-nodosum_M_contig893:24990..250311680870320.3240504-CDS-A-nodosum_M_contig893:24990..25031Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig893 24991..25031 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870320.334167-UTR-A-nodosum_M_contig893:25031..250561680870320.334167-UTR-A-nodosum_M_contig893:25031..25056Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig893 25032..25056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig893.5.1prot_A-nodosum_M_contig893.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig893 19631..25031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig893.5.1

>prot_A-nodosum_M_contig893.5.1 ID=prot_A-nodosum_M_contig893.5.1|Name=mRNA_A-nodosum_M_contig893.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=208bp
MQQSINHRDSLQERNRCLRAAKTEVRDSSSRYQPALDDSTDGLSPGGQTE
IKFESTETAETAENAVIAVPALPPSTATAGEPPSRGIPIFNNNCSMQQPF
NLEFSRDWNTSQTLRGASASRSNGEEIGEARRLQSAQSMFLSPGDEDFEF
LGNLLREAEASPSAAAFPNGRGITSFPGAAARRVSSSWIPAQNHSPVFSP
YPGIVSAG
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mRNA from alignment at A-nodosum_M_contig893:19631..25056-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig893.5.1 ID=mRNA_A-nodosum_M_contig893.5.1|Name=mRNA_A-nodosum_M_contig893.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5426bp|location=Sequence derived from alignment at A-nodosum_M_contig893:19631..25056- (Ascophyllum nodosum dioecious)
CAAACCCAAACACGGCGAGACTAGGATGCAGCAGAGCATCAATCATCGCG
ACTCCTTACAGGAGCGGTGAGTTTTTTCTGAGGAGATAACAGTTCCCCTC
CGCATTCGAACTGGCCACACCTAGACTATTCTAGTGATATTTATTAGTAA
TACAACTGCATCGGAAAAATTTAGTGTAATAATCATAGTCAATCTATTTC
GCCGACGTCTTCATTTACAACGCGTCTCATTTTTCTTGTACGGCAACAGC
ACTAGTATAGTGTAGCAGTAACAGTACTGTATACAGCACTGCAACAGTAG
TTTAAAGAAAAATCTGAACGCATCTACCCTTCTGAGCATCCCCCAGACAG
GGGGCGGGGATTGTCAAAACGTTTACTACCTGGTATTAGGTAGGAACATA
GGCTGCAAAGACAAAGTAGTACGATAATATGATAGTACTATTATTGTTTC
TAGTACATAGGATATTATTATAGAGTTGCGAGCAGGGTGCAAAACTCTTA
TTTACCTCCATACGGTGCGATCGATACCTCTCTCGAAGGTTTTCCGTTGT
TGCTGCATTGATTTGTATAGCGCTGCTAGCAGCAGCAGCTGCATCGAGTG
CTGCTGCAGGTGACTAGGAAAACAATAAAAAAAAGCAACAAGAAGATTTT
CCTTCAAAAACAACAGAACAACAACAGCAGAATAATAGCAGACATCAGTA
GTAGTAGTAGTAGTAGTGTTTTTAATGCTTACTTCTGGCTTTGTAGGAAA
ACAGTAGTAGTTCCAAATAATGTGCTGGGCAGGCCTCCTATCATATATTA
TCATATTATTGGGTACTACAGCAGCATAACAGCATACCAATGTTTTCTAT
TATAAAGAATAGTCTAATATGAGTGTAACAATAGCGAGCGCCACGGGTAT
TTTTATTGATATGGTATGTATGTATGGTCACACATATATAGCAAGAGTAT
GGATCAACCGGGTAAGGTTGCCAATCCTGCACGTGATCAGCTGAACAGGG
AAAAATGAATGTTTCCCTGTCCGCGTACGCGCCTGAGAATTTGGTCTCGC
GAGACAGATTCGGCCGTCCCGTCCCGCGTCAGTCTGCTCATCTCCATACT
CAGGCTGAATCTGGTGCTTACTTACAGGATCCCTCCCGAGTTCCCCGCGG
CGGCGTCCATTTATTTATTTAAAACCGCATGATACATACATACGCCATCG
GGTCAGTCCCGAGTTTATCGGGCCAAGCAATTGCGTACCGATGGCGTTCA
CTGCCGAGAGTCCACCGGCACAGGGCCAGTAAACCTCAAGTGAATTCCGA
ACGAGTGCTGCCTTGGCAGGTCACCATGGACCAATTAATATGCGTCTCTC
TTTCCCACACCCACTATTTGTATGAAGTGGGCATGTTGAAAGTACCGGCG
TATGTGTCTGTTAGTCGTCTCTGTTGGCGCCGTGAAACCGGTATACCGGG
CTGATTTTCTCCCTCCACGTGGTTTTTAATTATGTATTTATGATTTACAC
TTTCAGCGTATTGTCCTTCCAACTGAAGAAACTACGGCGACACAATATTG
CAACTACTAAATTTCACCATCTCAACAATCACCCGGCTTGAGGTCAACTG
AACATATATATTCCCCAGTCCCAGTTCGCGCTTACTTGAGAATTTGGTCT
CGCGAGACATGTTTGACCGCCCCGTCCCGTGCCAGCCTGCTTATAACTCA
CGGGGTTCCTCCCGATTTCCACGGCGGCGTCCGTTTATTTATACCGCCAA
CCGCCGCATCGGGCCAGTCCTGGGTTTATCAGCTCATGCAATTGCGTAAC
GATGGCGTTCTCTGCCGAGAGTCCGCGCCGGCACAGGACCAGTAGTCCTC
AAGGTAGTTCCATTAACTAATGTACGCCTTCTCTTTTCCCACACCCACTA
TTTTATTATAATATAATACTATTATCGGAGTAACGGGCAATGTATTGTGT
GCGATACCGACACAACACTGTATTGGAGCCAACGTGCAGTTGTTGTTTAA
AGAAAAGTCCGAACGCGCCTACACCTTCTTTGCTGTCTAAAGAAAAATGA
GAACGCGCCTAGACCTTCTGAGCTGCTGTTGTTTCTCACATTCAGCGTCT
TGGTTGCCAACCCGAAATAACTACTTTACACCTCCTGTGTGACCCCGGCT
GGTACGTTCAACGAACTTGATGTCCAGAATGAATGGGAAGAAAACACACA
CACACACGGTGGCAAATCCCGCTCGTGGTCTGCTGAACAGGGAAAAAGAA
AAAAGAAAAAAGAAGAATTCTGGCAGCGCACCCCCTGCCCCCCCCTCCCC
CACGCTGCTCGTTCGGAAAAAATAAAATAAAAATTACGCGACGCATCTAC
ATGCGTAGGCGCTACGCAGGTCTCGGTCCGTCTCGCGTCCGTACAAGGAT
TACCTCGACTCGTCGGCTAGGCCAATGGGTGTCGCTTCGCAAGATTCTAC
ACTTCCACGTGTGCGATAACAACTTTCCCAATATCGTTGCCTCCCTCTTC
TCCTGGCGATGTCTAGCCGCGTCTACCTCTCTTTTCCTCCAGGCGGCCAT
GAACCTCCGCCCACCCTCCTTGAATGTATCAACCCACACCTCAGCCTCTA
ACGTCGTCGCTTTCCAAACCCCCGTAATGCCAAACCCCCGGATGTCGCTC
TGTATGCAATCGGTCCACCCTTTCTCCTTCCCATTCCGTCCTCTCCGCAC
CGCACCCTCAAGGTTTCCGAACACGAGTCACTTTGGCAGCCGCCCGCCAC
TCGTTCGAATGAGCGTCCCCACCCACAAAAGTATTCTCGTGCGCAACGTT
GTCTCCATGCTTTCGCACCGGATCATCTCAAGGGAACAATTATACGAGGT
CATCCGATGGTCTGGTTTCTTGTGCCCCGATGATGCGAAGCAAGGCCCGG
TGGTGTACGGTGCGTAATTTGGCGTAGTGTTCCTGCCGGGGGGTCCACGC
ACTGCATCCATACAGGAGGGCCTCGATTACCTCGGCCTTTACCATTCGGG
TCTTGAGGGAGAGCGCTACTTTCGGTTGGTCGTAGAGCTCACGTAGTTAC
CGCCTGGTGCGCATCCGGCATGCGCGGGTTCGCCCGGCGATTTCAACGGA
CATGTCCGAGGTTTTGGTCACGGCGCCCCCTAGGTAGGTGAAGGTGAAGG
ATTGCACCTGTTTGTAGATTTGCCCGGCTGCTTCGGCTTGCACCATCGTC
TACGGTGTACGCGGTGGAGGCATACACATGGTCTCTCTCTTCTTCGCCGA
CACGGTTAACGCGAATGCTCGGCAAACTTCTACGATAACTTCCATCATCT
CAGCGAGCCCCTGCGGCGATTATAAAATGGCGGATAATTATGCACCCTCA
GTGTAGTAGTTTTGGGCGGCAGTTTAGTATTAGATTAATGTGCAAAGTGG
GTTTGTTGTAGTTTTGTTGAATCATCTCTGGAGTCCGAGCAGCAGTCGTC
GGAAATCTGCAGCAGTCGTCGGAACACCGTAAGAAATTAACACACCGGTA
CGAGCAGCAGCCGTCGGTAGTCTGCAGTGTTGCAGTGCAGCAGTAGTAGT
ACTGTAATATTGTAGTCCTTGACATACGTAGCGATCTGGCGACGACTTTC
GAGATCTCCCACCGGTACTTGGTGTGCTTTATTTTCCTACTTGAAGGTTC
TCGGGCACAGTACGTACCCCAAGCAGAAAGTCTCGACCGTCCACTGACAG
CTGAATGATACCGGTACGGCAAGAGAGCTTGACTGCCGTGGCCAGAAACT
GTACAGCGGGAATCATAAAGCCCCACCCTGGCAGGGTTTACTCACCCATT
ATTGCGGTCTGCAGGCGACCGAGATAATACTATAAAGGCTTTCTTCTTGA
AAGCGCGGCAAAACCGTGTATCCGTTTGATCTGGTAACAACTGCCTCCCA
ACAAGTACTTTGTTTGCCCCAGTTTTGGTGTCCCTGCGCATGACATTAAC
AGTAGTAATATGTTCAGATTTTTCTTTATACTGAATGTATGCGGAACGGC
GCGACAAGTAGTCTAGCGTTGATTACATAAAATAATACAACTAAATATTT
TAGCACTTTACTTCGTAAAAAAACACTTGAATAATGTGTTGCCTCGCACA
CTGCGGTTTACCAATTTCATCATCAAAACTGGGAGTACAGTGCGCAATGA
TATTTACTGGTTTTGATGATCGATCCTGCGAGCGTGGCATCATTGGCGAG
GGTTACGATACACTAATATCGTCGCCGACAACTGACAACGGTGCCAAGGC
GATCCCGCGCTGTACAGGACTCAATAGTCCGGTCGCTGCTTTCAAATGTA
ATATAAACAAAGCTCGTGTTCGAGCGTCGCTTGCAGAGCGTCTAAACATA
TTTGCTGTTGAATCGTGAACGTATATATGTCCCACGTTAAAACTCCGCCG
CGCGTTGTTGCTGCAGGAACCGTTGCCTGAGGGCAGCAAAAACCGAAGTG
CGGGACAGCTCATCAAGGTATCAGCCTGCCTTGGACGACAGCACTGACGG
GCTCTCGCCCGGCGGCCAAACTGAAATCAAATTCGAATCCACCGAGACGG
CGGAGACTGCGGAGAATGCGGTGATTGCCGTCCCTGCATTACCTCCGAGC
ACCGCCACCGCGGGCGAACCTCCATCCCGAGGGATTCCTATTTTTAATAA
TAATTGCAGCATGCAACAACCCTTCAACCTTGAATTTTCAAGGGATTGGA
ACACGTCTCAAACGTGAGTCGGACATACTGCGTATAGTACGGTACTTACG
TGTTACATCGCAGATTCCAGAGGTTTCATCAAACGCGGACAAACAACCCT
TTTTTTCGGAACCAAGAATAAGAAATTGTTTTGGAAATTGGCACGCACCT
GACCGCGCCCTGATGTTGCATACGTACCAGTTGGTGTTTCAGAACAAGTC
CAAACGGGTCAAACCGTGACTCCGTTTTGACTTCAAGATTTTTCGCTTCG
TAATCTTGAGGCGCAGCCTAGAGGGCGTGAGATCGTCGTGTCAAGTCGTA
GAGATGAGGTTTCGCCGGTTGCCGCGCATCAATTTCAGTCGTTCACGCTC
CGCGCATACCGATCCTTGCCGATCCTTGCCGCACGCCTTTTCGGTCGCCC
GTTTGAATCGCCTTGTTCATCGCTGACCCGCCTTGAGAAGCCTACGCGGA
GCCTCTGCCTCCCGTTCCAACGGCGAGGAGATTGGTGAAGCCAGACGTTT
GCAAAGTGCGCAGTCGATGTTTCTTTCTCCCGGTGACGAAGACTTCGAGT
TCTTGGGGAACCTCCTTCGGGAAGCAGAGGCCTCACCTTCTGCCGCTGCA
TTCCCCAACGGGCGTGGTATTACCTCATTTCCTGGCGCGGCCGCAAGAAG
GGTGTCCTCGTCATGGATCCCGGCGCAGAACCACTCGCCTGTTTTCTCAC
CCTATCCCGGCATCGTATCCGCAGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig893:19631..25056-

>mRNA_A-nodosum_M_contig893.5.1 ID=mRNA_A-nodosum_M_contig893.5.1|Name=mRNA_A-nodosum_M_contig893.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at A-nodosum_M_contig893:19631..25056- (Ascophyllum nodosum dioecious)
ATGCAGCAGAGCATCAATCATCGCGACTCCTTACAGGAGCGGAACCGTTG
CCTGAGGGCAGCAAAAACCGAAGTGCGGGACAGCTCATCAAGGTATCAGC
CTGCCTTGGACGACAGCACTGACGGGCTCTCGCCCGGCGGCCAAACTGAA
ATCAAATTCGAATCCACCGAGACGGCGGAGACTGCGGAGAATGCGGTGAT
TGCCGTCCCTGCATTACCTCCGAGCACCGCCACCGCGGGCGAACCTCCAT
CCCGAGGGATTCCTATTTTTAATAATAATTGCAGCATGCAACAACCCTTC
AACCTTGAATTTTCAAGGGATTGGAACACGTCTCAAACCCTACGCGGAGC
CTCTGCCTCCCGTTCCAACGGCGAGGAGATTGGTGAAGCCAGACGTTTGC
AAAGTGCGCAGTCGATGTTTCTTTCTCCCGGTGACGAAGACTTCGAGTTC
TTGGGGAACCTCCTTCGGGAAGCAGAGGCCTCACCTTCTGCCGCTGCATT
CCCCAACGGGCGTGGTATTACCTCATTTCCTGGCGCGGCCGCAAGAAGGG
TGTCCTCGTCATGGATCCCGGCGCAGAACCACTCGCCTGTTTTCTCACCC
TATCCCGGCATCGTATCCGCAGGG
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