mRNA_A-nodosum_M_contig893.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig893.4.1
Unique NamemRNA_A-nodosum_M_contig893.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig893.4.1 vs. uniprot
Match: D8LRY9_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY9_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 6.260e-25
Identity = 113/333 (33.93%), Postives = 146/333 (43.84%), Query Frame = 3 
Query:    6 LFTRVTDTWAIMEAEVPIIA-----------AIGRNFSEVVAGRLKATRLSVEAEMRVADKVAAARGE-MALVEPD---WRGNHILRGDVLSRLEAFRIYNIREAATGEPGFSLAKLRQDLVQRLRDTREVVIDRINSNYKAAATAAGVHGFQLSPAVSDNEVLMGI-DDAAQCVLQQLKATYYLVAEEVRHPTVRVPIGNIGKRLLEKQQAAKTAAAKEL-------FKGHVRSETDSCAGVTSAHSPIKITTNTRRLPSGASPSTKKTRRHGSGGRRCKNVECSLHPHFGFTRPEYCSRHKLPGMFNVKGXXXXXXXXXRTPVYGKKGDPH 935
            L  R+ D W+ +EAE+   A           A  ++F+EV+  RL+AT  +VEAE+    K A ARG+  A   P    WRG+  LRGDVLSRLEA+R  N  E   G PG    +                ++ I+   +A A A G  G              G+ +D A  + Q L+      A EV    V+  +   G    + + A + AAA                      A       P                  KK +R G+G RRCK+  C LHPHFG TRPEYCS+HKLPGMFNVKG         RTPVYG+ GDPH
Sbjct:  355 LLARLFDLWSTVEAEMVSYADGTAAASGGGGAPRKSFNEVLVERLQATCQAVEAEL----KAAKARGDDTAFCNPPQHHWRGSGALRGDVLSRLEAYRREN--EGNCGMPGSGHGRFSS-------------LNCIDDFERANALARG--GXXXXXRHRXXHAGGGLAEDGAGDLRQGLET-----AIEVTRGAVKSELLMFG----DDEPAQRNAAAHPARSXXXXXXXXXXXXXXXXVAPTARGGGPXXXXXXXXXXXXXXXXXXKKRKRSGNG-RRCKHEGCLLHPHFGLTRPEYCSKHKLPGMFNVKGRRCIHPECTRTPVYGRSGDPH 656
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig893.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRY9_ECTSI6.260e-2533.93EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY9... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig893contigA-nodosum_M_contig893:17119..19479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1275
Hectar predicted targeting categoryother localisation
Exons3
Cds size1206
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870320.5890086-UTR-A-nodosum_M_contig893:17118..171491680870320.5890086-UTR-A-nodosum_M_contig893:17118..17149Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig893 17119..17149 -
1680870320.6457338-UTR-A-nodosum_M_contig893:19441..194791680870320.6457338-UTR-A-nodosum_M_contig893:19441..19479Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig893 19442..19479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870320.606426-CDS-A-nodosum_M_contig893:17149..174981680870320.606426-CDS-A-nodosum_M_contig893:17149..17498Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig893 17150..17498 -
1680870320.6202252-CDS-A-nodosum_M_contig893:17741..178461680870320.6202252-CDS-A-nodosum_M_contig893:17741..17846Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig893 17742..17846 -
1680870320.634657-CDS-A-nodosum_M_contig893:18689..194411680870320.634657-CDS-A-nodosum_M_contig893:18689..19441Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig893 18690..19441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig893.4.1prot_A-nodosum_M_contig893.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig893 17150..19441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig893.4.1

>prot_A-nodosum_M_contig893.4.1 ID=prot_A-nodosum_M_contig893.4.1|Name=mRNA_A-nodosum_M_contig893.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=402bp
MEAEVPIIAAIGRNFSEVVAGRLKATRLSVEAEMRVADKVAAARGEMALV
EPDWRGNHILRGDVLSRLEAFRIYNIREAATGEPGFSLAKLRQDLVQRLR
DTREVVIDRINSNYKAAATAAGVHGFQLSPAVSDNEVLMGIDDAAQCVLQ
QLKATYYLVAEEVRHPTVRVPIGNIGKRLLEKQQAAKTAAAKELFKGHVR
SETDSCAGVTSAHSPIKITTNTRRLPSGASPSTKKTRRHGSGGRRCKNVE
CSLHPHFGFTRPEYCSRHKLPGMFNVKGRRCMDSECSRTPVYGKKGDPHP
TYCAAHKLDNMIDIKNPTCREQSCNRQPSFGLPQDRRATYCASHMLGGMV
NVRRMLAAKGLSRRLCRERLSAADTEACIAKLSASRRGETRADIRGPLGG
R*
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mRNA from alignment at A-nodosum_M_contig893:17119..19479-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig893.4.1 ID=mRNA_A-nodosum_M_contig893.4.1|Name=mRNA_A-nodosum_M_contig893.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2361bp|location=Sequence derived from alignment at A-nodosum_M_contig893:17119..19479- (Ascophyllum nodosum dioecious)
AGAGTTTGTTCACCCGCGTGACGGACACGTGGGCAATTATGGAGGCCGAG
GTACCCATTATCGCCGCGATTGGCAGAAACTTCAGTGAGGTGGTGGCGGG
GCGACTCAAAGCAACTCGTCTATCGGTTGAGGCCGAAATGAGGGTGGCTG
ATAAAGTTGCCGCGGCCAGGGGCGAGATGGCTTTGGTTGAGCCTGATTGG
CGCGGCAACCACATTTTACGAGGTGACGTGCTCTCCAGGCTGGAGGCGTT
TAGGATCTACAATATCAGAGAGGCAGCTACGGGTGAACCCGGTTTCTCAC
TAGCCAAGCTCCGCCAGGACCTGGTGCAGAGGCTGCGGGACACGAGAGAA
GTCGTTATTGACAGGATTAACTCGAACTACAAGGCGGCGGCTACCGCGGC
CGGAGTTCATGGCTTTCAATTATCGCCAGCTGTCAGTGATAACGAAGTGT
TGATGGGCATCGACGACGCGGCTCAATGTGTGTTGCAGCAGCTGAAGGCC
ACCTACTACCTCGTGGCCGAGGAAGTGCGGCACCCAACGGTTCGCGTGCC
AATTGGCAACATCGGAAAGCGCTTGCTCGAAAAGCAACAAGCAGCTAAGA
CTGCAGCCGCCAAGGAACTATTCAAAGGTCACGTGCGCAGCGAGACTGAC
TCATGTGCAGGTGTAACAAGCGCTCACAGCCCAATCAAGATAACTACAAA
CACTCGGAGGCTCCCCAGTGGCGCCAGCCCTAGCACCAAAAAAACAAGGA
GGCATGGCAGTGGGGGGAGACGGTGTAAAAATGTGGAGTGGTGAGTATCA
CGAGATGGCTTCAAGTCTAACCATACGAAAAACGAACACGTTCAAAGACT
CGTTCATCGAAAGGAGGGGTAGTTGCTACAACTTTTTCCCCGCTTGCGGG
GATCGTTTCAATATATCCCCTGGTAGATTGAGTTGTATTTAGGTTATACT
TACTGAACGGATTCGATTCCAAGATGCGAATAGATTGGTACACTATTCTG
ACTTATAGGATGTTATGATTGCTTCCGTAGTTTCGTTATATGATACTGGT
ACGTATTTGGGGGGGCAGTATTCGTCCGCTTGACTACCCTCCTTTTGTTC
AGTTCTGTAGTGGAACCACTACGGTGTTCTCGTGCCTTTGATACCCAAGG
TGTACGGGTTTATATATTCGACTATGATATATGTTAACGTCAAGCCTGTT
CAAACAACACCCAGCACAGCACCATCTCTCCCGTGTGAGACCCATCCCGC
CCAGAGACTTTCCATTACACCAGTGGGGAACCCGACGGTAAAGGACCCCG
CCCATTACGATCCCACTGAGGGTTGGGGCTGGATAGCTTCATCTCCGGTA
GGGGTTGTTTTGATATCTTCCTCCTGAACCTGGGAACGGGTTGGTCATAT
TCCCGCCCCCCCTGCACCGTCTCCAGCGTTGAATGACTCGAAGCATGTTC
AACGGAAGGTGTTCGCCAACGGCCGACTGAAATATGTAGTACCTAGGGAA
GTTACACGGTGCACCAGCCGCTCGTTCATCCCTAATATCCGGCGCAGAAA
TTGTACTCAAATGATACCCCTCGTCCGCCCATCCTCCTGGCTTTTTGTGA
CCATCGTCTATTACTCTCGGGTTCCGTTCTCAGTTCTCTCCATCCGCATT
TCGGATTCACTCGCCCGGAATACTGCTCTCGCCACAAGCTCCCTGGCATG
TTCAACGTCAAAGGGCGCCGATGCATGGATTCGGAGTGGTGAGTCACAGT
TTTTTTTTCTCGTCAACTCTCGCTGCTTAATATGTTTTCAAACGAGCCTA
TCAACCCAGCACTGGATCTTTTGATGTTACACTTGAGCATAGAGAGGCAC
GCTCTCTAGGTAACGAGCACGCTCGCTCGCCAAGGCCTTCACTACCCGGC
GAGGATCCCAAAACCACTTTTTTGCGCGAATGTTGCCGGGTTACGGCCGT
TGCTGTGTTGCTCCGCTGTTTACTTGCGCAGCTCACGTACTCCCGTGTAT
GGCAAGAAGGGGGACCCTCACCCCACGTACTGCGCGGCGCACAAGCTGGA
CAACATGATCGATATCAAGAACCCAACCTGCCGTGAGCAGTCCTGCAACC
GCCAGCCAAGCTTCGGGTTGCCTCAGGACCGGAGGGCTACCTATTGCGCG
TCGCACATGTTGGGGGGGATGGTAAACGTGCGGCGGATGCTGGCAGCAAA
GGGTTTGTCCAGGCGCCTATGCCGTGAGAGATTGTCGGCTGCGGACACTG
AGGCGTGCATCGCCAAGCTCTCTGCATCCAGGCGCGGGGAAACACGCGCA
GATATCCGTGGGCCGCTTGGAGGAAGGTAGAGAGAAACGCGCTAATGGTG
CGAAAGCATCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig893:17119..19479-

>mRNA_A-nodosum_M_contig893.4.1 ID=mRNA_A-nodosum_M_contig893.4.1|Name=mRNA_A-nodosum_M_contig893.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at A-nodosum_M_contig893:17119..19479- (Ascophyllum nodosum dioecious)
ATGGAGGCCGAGGTACCCATTATCGCCGCGATTGGCAGAAACTTCAGTGA
GGTGGTGGCGGGGCGACTCAAAGCAACTCGTCTATCGGTTGAGGCCGAAA
TGAGGGTGGCTGATAAAGTTGCCGCGGCCAGGGGCGAGATGGCTTTGGTT
GAGCCTGATTGGCGCGGCAACCACATTTTACGAGGTGACGTGCTCTCCAG
GCTGGAGGCGTTTAGGATCTACAATATCAGAGAGGCAGCTACGGGTGAAC
CCGGTTTCTCACTAGCCAAGCTCCGCCAGGACCTGGTGCAGAGGCTGCGG
GACACGAGAGAAGTCGTTATTGACAGGATTAACTCGAACTACAAGGCGGC
GGCTACCGCGGCCGGAGTTCATGGCTTTCAATTATCGCCAGCTGTCAGTG
ATAACGAAGTGTTGATGGGCATCGACGACGCGGCTCAATGTGTGTTGCAG
CAGCTGAAGGCCACCTACTACCTCGTGGCCGAGGAAGTGCGGCACCCAAC
GGTTCGCGTGCCAATTGGCAACATCGGAAAGCGCTTGCTCGAAAAGCAAC
AAGCAGCTAAGACTGCAGCCGCCAAGGAACTATTCAAAGGTCACGTGCGC
AGCGAGACTGACTCATGTGCAGGTGTAACAAGCGCTCACAGCCCAATCAA
GATAACTACAAACACTCGGAGGCTCCCCAGTGGCGCCAGCCCTAGCACCA
AAAAAACAAGGAGGCATGGCAGTGGGGGGAGACGGTGTAAAAATGTGGAG
TGTTCTCTCCATCCGCATTTCGGATTCACTCGCCCGGAATACTGCTCTCG
CCACAAGCTCCCTGGCATGTTCAACGTCAAAGGGCGCCGATGCATGGATT
CGGAGTGCTCACGTACTCCCGTGTATGGCAAGAAGGGGGACCCTCACCCC
ACGTACTGCGCGGCGCACAAGCTGGACAACATGATCGATATCAAGAACCC
AACCTGCCGTGAGCAGTCCTGCAACCGCCAGCCAAGCTTCGGGTTGCCTC
AGGACCGGAGGGCTACCTATTGCGCGTCGCACATGTTGGGGGGGATGGTA
AACGTGCGGCGGATGCTGGCAGCAAAGGGTTTGTCCAGGCGCCTATGCCG
TGAGAGATTGTCGGCTGCGGACACTGAGGCGTGCATCGCCAAGCTCTCTG
CATCCAGGCGCGGGGAAACACGCGCAGATATCCGTGGGCCGCTTGGAGGA
AGGTAG
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