mRNA_A-nodosum_M_contig8929.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8929.1.1
Unique NamemRNA_A-nodosum_M_contig8929.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8929.1.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 2.000e-45
Identity = 75/108 (69.44%), Postives = 88/108 (81.48%), Query Frame = 1 
Query:    1 LVRDGDQQVKVGMKEFMHHEAFTGMTRDGVFTGQPHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSVHTRLISLYPDDPAKRAHIIRQMNLSVQLLRENGTKE 324
            L++DG  QV VGMKE+MHHEA+TG+T DGVF G+PH+LF+G VP   DAPPF  K +D+A L KIQQRYDSVH RL +LYPDDPAKR   IR+MNLSVQLLRE GTK+
Sbjct:   60 LLKDGPSQVTVGMKEYMHHEAYTGLTGDGVFAGEPHDLFVGGVPDPADAPPFQLKDIDKATLDKIQQRYDSVHPRLEALYPDDPAKRNEYIREMNLSVQLLRERGTKD 167
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BLAST of mRNA_A-nodosum_M_contig8929.1.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 7.490e-43
Identity = 71/108 (65.74%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:    1 LVRDGDQQVKVGMKEFMHHEAFTGMTRDGVFTGQPHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSVHTRLISLYPDDPAKRAHIIRQMNLSVQLLRENGTKE 324
            L++DG  QV VGMKEFMHHE + GMT DGVF G+PHE+F+G +P   DAPPF  KAV++  L KIQQRYDSV  RL +L+PDDPAKR+ I+R+MNLSV+LLRE GTK+
Sbjct:    9 LLKDGPTQVTVGMKEFMHHEVYRGMTGDGVFAGKPHEVFVGGIPDAADAPPFELKAVEQDTLVKIQQRYDSVVPRLEALFPDDPAKRSEIVREMNLSVELLRETGTKD 116
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BLAST of mRNA_A-nodosum_M_contig8929.1.1 vs. uniprot
Match: A0A6H5KUF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF7_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.240e-27
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:   37 MKEFMHHEAFTGMTRDGVFTGQPHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSVHTRLISLYPD 246
            MKE+MHHEA+TG+T DGVF G+PHELF+G VP   DAP F  K +D+A L KIQQRYDSVH RL  LYPD
Sbjct:    1 MKEYMHHEAYTGLTGDGVFAGEPHELFVGGVPDPADAPLFQLKDIDKATLDKIQQRYDSVHPRLEVLYPD 70
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BLAST of mRNA_A-nodosum_M_contig8929.1.1 vs. uniprot
Match: A0A6H5KD34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD34_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 4.460e-21
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   37 MKEFMHHEAFTGMTRDGVFTGQPHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSV 216
            MKE+MHHEA+TG+T DGVF G+PHELF+G VP   DAPPF  K +D+A L KIQQRYDSV
Sbjct:    1 MKEYMHHEAYTGLTGDGVFAGEPHELFVGGVPDPADAPPFQLKDIDKATLDKIQQRYDSV 60
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BLAST of mRNA_A-nodosum_M_contig8929.1.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.250e-16
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:    7 RDGDQQVKVGMKEFMHHEAFTGMTRDGVFTGQ--PHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSVHTRLISLYPDDPAKRAHIIRQMNLSVQLLRENGTKE 324
            + GD +VKV +K+ MH   + G+  DG       PH+LF+GS PR++DAPP+  K V E ++ K++QRY + H RL + +P D         +   SV+LLR+ G +E
Sbjct:  336 KGGDGRVKVRVKKHMHGAEWNGIHEDGNLNPDALPHDLFIGSPPRIQDAPPYKLKRVPEDVIQKVEQRYLASHERLAAAFPLDDGAVQRAKDEQKQSVRLLRQTGERE 443
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8929.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KIQ0_9PHAE2.000e-4569.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYY8_ECTSI7.490e-4365.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUF7_9PHAE2.240e-2768.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD34_9PHAE4.460e-2170.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE1.250e-1638.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8929contigA-nodosum_M_contig8929:7221..7877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size328
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870320.253177-CDS-A-nodosum_M_contig8929:7220..74671680870320.253177-CDS-A-nodosum_M_contig8929:7220..7467Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8929 7221..7467 +
1680870320.2662394-CDS-A-nodosum_M_contig8929:7798..78751680870320.2662394-CDS-A-nodosum_M_contig8929:7798..7875Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8929 7799..7875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8929.1.1prot_A-nodosum_M_contig8929.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8929 7221..7875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8929.1.1

>prot_A-nodosum_M_contig8929.1.1 ID=prot_A-nodosum_M_contig8929.1.1|Name=mRNA_A-nodosum_M_contig8929.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=108bp
LVRDGDQQVKVGMKEFMHHEAFTGMTRDGVFTGQPHELFLGSVPRVEDAP
PFVFKAVDEAILSKIQQRYDSVHTRLISLYPDDPAKRAHIIRQMNLSVQL
LRENGTKE
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mRNA from alignment at A-nodosum_M_contig8929:7221..7877+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8929.1.1 ID=mRNA_A-nodosum_M_contig8929.1.1|Name=mRNA_A-nodosum_M_contig8929.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=657bp|location=Sequence derived from alignment at A-nodosum_M_contig8929:7221..7877+ (Ascophyllum nodosum dioecious)
CTGGTCAGAGACGGCGACCAGCAGGTGAAGGTGGGCATGAAGGAGTTCAT
GCATCACGAGGCGTTCACGGGCATGACACGAGATGGAGTTTTCACCGGAC
AGCCCCACGAGCTCTTCCTTGGCAGCGTCCCAAGGGTAGAAGATGCGCCC
CCGTTCGTCTTCAAGGCGGTTGACGAGGCGATCCTCTCGAAGATTCAGCA
ACGCTACGACAGCGTGCACACCAGGTTGATCTCGCTGTATCCCGATGGTG
AGAGATGGTTCCGCTCCTTCGCTGTAAAGTGCTTGCTGATTCAATGAATG
TAGGTAGGTAACCCTAACCCTTGTCATTTCGCTGGTTGTCTGCGCGTTGA
CCTCCAATTGTTTTGTGTTTTTTCGCATGCATGCTCCCCATTCCCTACCG
ACCGCTGTTATACCACTGTAGCCAGAGATGCGGTTAGCATATACAGAACA
TGTGCCAATCTCGACTAAAGTAGGCATGTCCTTCCTTACCACCCGAGAGT
CAATATCCTCCTGCACGGGCATGTCGTTTTGCCCACTTACACCAATTTTG
TTCTTCGTTTCCAATCGCTTCGGTGCAGACCCTGCTAAAAGAGCTCACAT
CATACGACAGATGAACCTCTCCGTCCAACTTTTGCGTGAGAATGGAACGA
AGGAGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8929:7221..7877+

>mRNA_A-nodosum_M_contig8929.1.1 ID=mRNA_A-nodosum_M_contig8929.1.1|Name=mRNA_A-nodosum_M_contig8929.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at A-nodosum_M_contig8929:7221..7877+ (Ascophyllum nodosum dioecious)
CTGGTCAGAGACGGCGACCAGCAGGTGAAGGTGGGCATGAAGGAGTTCAT
GCATCACGAGGCGTTCACGGGCATGACACGAGATGGAGTTTTCACCGGAC
AGCCCCACGAGCTCTTCCTTGGCAGCGTCCCAAGGGTAGAAGATGCGCCC
CCGTTCGTCTTCAAGGCGGTTGACGAGGCGATCCTCTCGAAGATTCAGCA
ACGCTACGACAGCGTGCACACCAGGTTGATCTCGCTGTATCCCGATGACC
CTGCTAAAAGAGCTCACATCATACGACAGATGAACCTCTCCGTCCAACTT
TTGCGTGAGAATGGAACGAAGGAG
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