mRNA_A-nodosum_M_contig8920.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8920.1.1
Unique NamemRNA_A-nodosum_M_contig8920.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8920.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8920contigA-nodosum_M_contig8920:17728..18061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7897.ENSLACP00000017164
Model size334
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.3e-05
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48EZY@7711|Chordata,49BMJ@7742|Vertebrata
DescriptionRibonuclease H protein
Cds size333
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870320.176695-CDS-A-nodosum_M_contig8920:17728..180611680870320.176695-CDS-A-nodosum_M_contig8920:17728..18061Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8920 17729..18061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8920.1.1prot_A-nodosum_M_contig8920.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8920 17729..18061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8920.1.1

>prot_A-nodosum_M_contig8920.1.1 ID=prot_A-nodosum_M_contig8920.1.1|Name=mRNA_A-nodosum_M_contig8920.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=111bp
GASFDVENASVDTGETLRQTLRVIGAQRKRPDHQMTSYNRALEITRWESI
ETTLRTRELLWAGTLIRMSGGQLPKRIVFGNLEGVARRGRGGKEKEWTDG
VQSDKWAFGIN
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mRNA from alignment at A-nodosum_M_contig8920:17728..18061-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8920.1.1 ID=mRNA_A-nodosum_M_contig8920.1.1|Name=mRNA_A-nodosum_M_contig8920.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=334bp|location=Sequence derived from alignment at A-nodosum_M_contig8920:17728..18061- (Ascophyllum nodosum dioecious)
GGCGCATCGTTCGACGTAGAAAACGCCTCCGTTGATACCGGGGAAACACT
ACGCCAAACTCTTCGCGTCATCGGGGCACAGCGCAAGAGACCAGACCATC
AGATGACCTCGTACAACCGTGCCCTTGAGATAACCCGGTGGGAGAGCATT
GAGACAACGTTGCGCACGAGAGAACTTTTGTGGGCGGGGACGCTTATCCG
AATGAGCGGCGGGCAGCTGCCAAAGCGAATCGTGTTCGGAAACCTTGAGG
GTGTAGCGCGGAGAGGACGAGGTGGCAAGGAGAAAGAGTGGACCGATGGC
GTACAGAGCGACAAATGGGCGTTTGGCATAAATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8920:17728..18061-

>mRNA_A-nodosum_M_contig8920.1.1 ID=mRNA_A-nodosum_M_contig8920.1.1|Name=mRNA_A-nodosum_M_contig8920.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=333bp|location=Sequence derived from alignment at A-nodosum_M_contig8920:17728..18061- (Ascophyllum nodosum dioecious)
GGCGCATCGTTCGACGTAGAAAACGCCTCCGTTGATACCGGGGAAACACT
ACGCCAAACTCTTCGCGTCATCGGGGCACAGCGCAAGAGACCAGACCATC
AGATGACCTCGTACAACCGTGCCCTTGAGATAACCCGGTGGGAGAGCATT
GAGACAACGTTGCGCACGAGAGAACTTTTGTGGGCGGGGACGCTTATCCG
AATGAGCGGCGGGCAGCTGCCAAAGCGAATCGTGTTCGGAAACCTTGAGG
GTGTAGCGCGGAGAGGACGAGGTGGCAAGGAGAAAGAGTGGACCGATGGC
GTACAGAGCGACAAATGGGCGTTTGGCATAAAT
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