mRNA_A-nodosum_M_contig892.19.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig892.19.1
Unique NamemRNA_A-nodosum_M_contig892.19.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig892.19.1 vs. uniprot
Match: A0A6H5KMX5_9PHAE (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMX5_9PHAE)

HSP 1 Score: 540 bits (1392), Expect = 1.330e-185
Identity = 270/348 (77.59%), Postives = 293/348 (84.20%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPTLWYAKTGERIGTYQGHQGAVWDLSVAWDSTRLISASADASARMWDVQTGRELVVYNHMGPVRSCAFAEGAQRFATVSDPFTDSPGLISVFETPDNVPTDQLEKIASLEIEVPPKMKATKVVWGAMNEKLIVSYTDGTLRTFDPLDATELQYAQVAKGEDGIHQKDINRLYPNKDRTLLLTCSKDYTAKLLNADTLEVLKTYKTDRPVNAAIMHPSKEHVILGGGQDAMSVTTTSSSVGKFEARFFHMIYEEEFGRVKGHFGPINVLAVNPNGLSFASGAEDGYVRLHFFDEDYLNKQDEIPDELEEGHKDAADG 1047
            RPILLKGHERAITCVVYNNDGDLVFTA+KDQIP+LWYAKTGERIGTYQGHQG                               RELVVYNHMGPVRS AFAEG QRFATVSDPFTDSPGLISVFE PD+VPTDQL+KIASLEI++PPKMKAT VVWGA+NEKLIVSY DGT+RTFDP D TEL+YAQV       H +DINRL  NKDRTLLLT SKDYT+KLL+A+TL+VLKTYKTDRPVNA++MHP+KEHVILGGGQDAMSVTTTSS+VGKFE+RFFHMIYE EFGRVKGHFGPIN LA+NPNGLS+ASG+EDGYVRLHFFDEDYLN QDE+PDELEEG K AA G
Sbjct:    2 RPILLKGHERAITCVVYNNDGDLVFTASKDQIPSLWYAKTGERIGTYQGHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELVVYNHMGPVRSVAFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLDKIASLEIDLPPKMKATTVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQV-------HSQDINRLCINKDRTLLLTSSKDYTSKLLDANTLQVLKTYKTDRPVNASVMHPTKEHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYETEFGRVKGHFGPINALAINPNGLSYASGSEDGYVRLHFFDEDYLNMQDEVPDELEEGSKAAAGG 342          
BLAST of mRNA_A-nodosum_M_contig892.19.1 vs. uniprot
Match: D8LIC2_ECTSI (Eukaryotic initiation factor eIF3 i subunit p36 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC2_ECTSI)

HSP 1 Score: 483 bits (1244), Expect = 3.290e-164
Identity = 235/274 (85.77%), Postives = 257/274 (93.80%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPTLWYAKTGERIGTYQGHQGAVWDLSVAWDSTRLISASADASARMWDVQTGRELVVYNHMGPVRSCAFAEGAQRFATVSDPFTDSPGLISVFETPDNVPTDQLEKIASLEIEVPPKMKATKVVWGAMNEKLIVSYTDGTLRTFDPLDATELQYAQVAKGE---DGIHQKDINRLYPNKDRTLLLTCSKDYTAKLLNADTLEVLKTYKTDRPVNAAIMHPSKEHVILGGGQDAMSVTTTSSSV 816
            RPILLKGHERAITCVVYNNDGDLVFTAAKDQIP+LWYAKTGERIGTYQGHQGAVWDLSV+WDSTR++SASADASARMWDVQTGRELVVYNHMGPVRS +FAEG QRFATVSDPFTDSPGLISVFE PD+VPTDQLEKIA LEI++PPKMKATKVVWGA+NEKLIV+Y DGT+RTFDP D TEL+YAQV   +    G+H KDINRL  NKDRTLLLTCSKDYT+KLL+A+TL+VLKTYKTDRPVNA++MHP+KEHVILGGGQDAMSVTTTSS+V
Sbjct:    2 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPSLWYAKTGERIGTYQGHQGAVWDLSVSWDSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVSFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPPKMKATKVVWGALNEKLIVAYADGTIRTFDPFDGTELEYAQVGTRQGRSSGVHSKDINRLCINKDRTLLLTCSKDYTSKLLDANTLQVLKTYKTDRPVNASVMHPTKEHVILGGGQDAMSVTTTSSNV 275          
BLAST of mRNA_A-nodosum_M_contig892.19.1 vs. uniprot
Match: A0A835ZF13_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF13_9STRA)

HSP 1 Score: 476 bits (1226), Expect = 1.660e-160
Identity = 226/347 (65.13%), Postives = 276/347 (79.54%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPTLWYAKTGERIGTYQGHQGAVWDLSVAWDSTRLISASADASARMWDVQTGRELVVYNHMGPVRSCAFAEGAQRFATVSDPFTDSPGLISVFETPDNVPTDQLEKIASLEIEVPPKMKATKVVWGAMNEKLIVSYTDGTLRTFDPLDATELQYAQVAKGEDGIHQKDINRLYPNKDRTLLLTCSKDYTAKLLNADTLEVLKTYKTDRPVNAAIMHPSKEHVILGGGQDAMSVTTTSSSVGKFEARFFHMIYEEEFGRVKGHFGPINVLAVNPNGLSFASGAEDGYVRLHFFDEDYLNKQDEIPDELEEGHKDAAD 1044
            RPILLK HERAITCV+YN DGDLVFTAAKD +PT+W A TGER+GTY GH GAVW+LS  WDS  L+SASADA+ R+WDVQTG  LV Y H GPVRS  +AEG Q+F + S PF DSPG IS+++TP +V   Q +++AS EI +P K K T+V+W A+N++++ S+ DGT+R FDP +  EL            H K I+R+Y + DRTLLLTCSKDYTAKLL+ADTLEVLK Y T+RPVNAA++HP+K+H++LGGGQDAMSVTTT S VGKFE RF+HMIYEEEFGRVKGHFGPIN LA+NP+GLS+ SGAEDGY+RLH FD +Y++KQDE+PDELEE  +  AD
Sbjct:    2 RPILLKSHERAITCVIYNADGDLVFTAAKDNVPTVWRADTGERLGTYIGHSGAVWELSCRWDSKYLLSASADATVRLWDVQTGESLVSYPHRGPVRSVCWAEGGQKFVSASQPFMDSPGFISIYDTPSDVDPSQYQQVASREISIPNKEKCTEVLWSALNDRILASFEDGTIRVFDP-ETGELLSTSTP------HSKPISRMYLSTDRTLLLTCSKDYTAKLLDADTLEVLKVYPTERPVNAAVIHPTKDHILLGGGQDAMSVTTTGSRVGKFETRFYHMIYEEEFGRVKGHFGPINALAINPDGLSYCSGAEDGYIRLHHFDREYVDKQDEVPDELEELDETEAD 341          
BLAST of mRNA_A-nodosum_M_contig892.19.1 vs. uniprot
Match: A0A6V2RRW4_HETAK (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2RRW4_HETAK)

HSP 1 Score: 397 bits (1019), Expect = 2.040e-129
Identity = 192/347 (55.33%), Postives = 254/347 (73.20%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPTLWYAKTGERIGTYQGHQGAVWDLSVAWDSTRLISASADASARMWDVQTGRELVVYNHMGPVRSCAFAEGAQRFATVSDPFTDSPGLISVFETPDNVPTDQLEKIASLEIEVPPKMKATKVVWGAMNEKLIVSYTDGTLRTFDPLDATELQYAQVAKGEDGIHQKDINRLYPNKDRTLLLTCSKDYTAKLLNADTLEVLKTYKTDRPVNAAIMHPSKEHVILGGGQDAMSVTTTSSSVGKFEARFFHMIYEEEFGRVKGHFGPINVLAVNPNGLSFASGAEDGYVRLHFFDEDYLNKQDEIPDELEEGHKDAAD 1044
            RPILLKGHER+IT V+YN DGDL+FTA+KD +P++WY++ GERIGTY GH GAVWDL  +WDSTRL+S SADA+ +MWDV+TG E   +NH GPVRS  +AEG Q F +VSDPF +SP  +SV++ PD+   +Q+EKI  LEI++  K       +   N++++V+  DG++R +D    T  Q  QV       H + I  ++ NK+R+L+LT S D  +KL++ D +EV+K YKTDRPVNA  + P K+HV++GGGQDAMSVTTT S  GKFE RF+H I EEEFGRVKGHFGP+N L V+P G  FASGAEDGYVRLH +D++YL+K D +P++ EEG  D+ +
Sbjct:    2 RPILLKGHERSITKVLYNRDGDLIFTASKDSVPSVWYSENGERIGTYHGHVGAVWDLDCSWDSTRLLSGSADATVKMWDVETGVETCTFNHKGPVRSVRWAEGCQAFVSVSDPFMESPPFVSVYDCPDDADPEQIEKIPRLEIQLD-KKSTGGAHFIKENKEILVAMEDGSIRIYDA--ETGEQIHQVKH-----HTQKIQTVFFNKERSLMLTGSADTWSKLIDLDNMEVIKQYKTDRPVNAVAISPDKDHVLMGGGQDAMSVTTTGSKAGKFETRFYHAIAEEEFGRVKGHFGPVNALGVDPRGRGFASGAEDGYVRLHHYDQEYLDKTDPVPEDFEEGEVDSEE 340          
BLAST of mRNA_A-nodosum_M_contig892.19.1 vs. uniprot
Match: A0A7S2NVM0_9STRA (Eukaryotic translation initiation factor 3 subunit I n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NVM0_9STRA)

HSP 1 Score: 380 bits (976), Expect = 6.410e-123
Identity = 185/352 (52.56%), Postives = 248/352 (70.45%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPTLWYAKTGERIGTYQGHQGAVWDLSVAWDSTRLISASADASARMWDVQTGRELVVYNHMGPVRSCAFAEGAQRFATVSDPFTDSPGLISVFETPDNVPTDQLEKIASLEIEVPPKMK-----ATKVVWGAMNEKLIVSYTDGTLRTFDPLDATELQYAQVAKGEDGIHQKDINRLYPNKDRTLLLTCSKDYTAKLLNADTLEVLKTYKTDRPVNAAIMHPSKEHVILGGGQDAMSVTTTSSSVGKFEARFFHMIYEEEFGRVKGHFGPINVLAVNPNGLSFASGAEDGYVRLHFFDEDYLNKQDEIPDELEEGHKDAAD 1044
            RPILLKGHER+IT V YN DGDL+FTA+KD +P++W A+ G R+GT+ GH+G +WDL     +T L+SASAD + ++W +  G+ +  Y H GPVR  A+A G Q FAT+SDPF + PG ISVF  P +   +Q  +   LEIE+P   K     AT VVW  +NE + V++ +G +R +DP +  EL+  Q        H+K INR+  N+++T+ +T S D+TAKL +   LE LKTY+TDRPVN A++ P+K+H++LGGGQ+AMSVTTT+  VGKFE RFFH++YEEEFG VKGHFGPIN L +NPNGLS+ASGAEDGY+RLHFFD+ Y+  +D +P+  E    D  D
Sbjct:    2 RPILLKGHERSITVVKYNRDGDLLFTASKDHVPSVWRAEDGSRLGTFNGHKGTIWDLDSDSTTTYLLSASADTTVKLWSICDGQIIRDYPHRGPVRGVAWAAGGQMFATISDPFVEHPGYISVFAVPKSESPEQWSEKPILEIELPKNNKGQRVNATNVVWLNLNEAIFVTFDNGCIRLYDPENGEELEEIQP-------HEKKINRVSFNRNKTMFITSSADFTAKLYDVVELEHLKTYQTDRPVNDAVISPTKDHILLGGGQEAMSVTTTAGKVGKFETRFFHLVYEEEFGIVKGHFGPINALDINPNGLSYASGAEDGYIRLHFFDKSYIEMKDPVPEVNETDDDDEED 346          
BLAST of mRNA_A-nodosum_M_contig892.19.1 vs. uniprot
Match: A0A7R9YCC7_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCC7_9STRA)

HSP 1 Score: 381 bits (978), Expect = 1.800e-122
Identity = 185/339 (54.57%), Postives = 249/339 (73.45%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPTLWYAKTGERIGTYQGHQGAVWDLSVAWDSTRLISASADASARMWDVQTGRELVVYNHMGPVRSCAFAEGAQRFATVSDPFTDSPGLISVFETPDNVPTDQLEKIASLEIEVPPKMKATKVVWGAMNEKLIVSYTDGTLRTFDPLDATELQYAQVAKGEDGIHQKDINRLYPNKDRTLLLTCSKDYTAKLLNADTLEVLKTYKTDRPVNAAIMHPSKEHVILGGGQDAMSVTTTSSSVGKFEARFFHMIYEEEFGRVKGHFGPINVLAVNPNGLSFASGAEDGYVRLHFFDEDYLNKQDEIPDELE 1020
            RPILLKGHERA+T V YN DGDL+F+AAKD  PT+WYA TG R+GT+ GHQGAVWDL V++DS+RL++ASADA+ R+W+V+TGREL  Y+H GPVR+ A+AEG Q FAT ++PF   PG I+V+  P +        I +   E+PP+++A+++ W   N++++++Y DG+LR  D     EL        +  IH+  I  +  + D+TLL+T S D ++KLL+A TLEVL+T++TDRPVNAA + P +EHVI+GGGQDAMSVTTT+   GKFEARF+HM Y EEFGRVKGHFGPIN + +NP+G S+ASG EDGY+RLH FD  Y    D +P++ +
Sbjct:   40 RPILLKGHERALTRVKYNADGDLLFSAAKDPKPTVWYADTGVRLGTFNGHQGAVWDLDVSYDSSRLLTASADATVRLWEVRTGRELCQYDHSGPVRAVAWAEGCQYFATAAEPFGKHPGQIAVYYCPSDAEEYDQLPIENRVFEIPPEVRASQIAWLNNNKEILIAYDDGSLRILDAEYGDELH-------KFNIHKHRIMDMQFSIDKTLLITASYDTSSKLLDATTLEVLETFQTDRPVNAAALSPIREHVIIGGGQDAMSVTTTAGQQGKFEARFYHMWYAEEFGRVKGHFGPINAIGINPDGRSYASGGEDGYIRLHHFDPSYFAIADPVPEDFD 371          
BLAST of mRNA_A-nodosum_M_contig892.19.1 vs. uniprot
Match: A0A1Z5K121_FISSO (Eukaryotic translation initiation factor 3 subunit I n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K121_FISSO)

HSP 1 Score: 379 bits (973), Expect = 2.140e-122
Identity = 187/343 (54.52%), Postives = 248/343 (72.30%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPTLWYAKTGERIGTYQGHQGAVWDLSVAWDSTRLISASADASARMWDVQTGRELVVYNHMGPVRSCAFAEGAQRFATVSDPFTDSPGLISVFETPDNVPTDQLEKIASLEIEVPP----KMKATKVVWGAMNEKLIVSYTDGTLRTFDPLDATELQYAQVAKGEDGIHQKDINRLYPNKDRTLLLTCSKDYTAKLLNADTLEVLKTYKTDRPVNAAIMHPSKEHVILGGGQDAMSVTTTSSSVGKFEARFFHMIYEEEFGRVKGHFGPINVLAVNPNGLSFASGAEDGYVRLHFFDEDYLNKQDEIPDELE 1020
            RP LL+GHER IT V +N+DGDL+FTA+KD +P++W  + GER+GTY GH+G VWDL     + RL++ASAD S R+WDV+TG  + V+NH GPVR  A+AEG+Q F T+SDPF D P  I VF+ P++           LEIE+P      +K T V W A+NE L+V++ +G +R +DP +  +L      K E   H+K INRL  N+++TL +T S D+T+KL +   L+ LKTY+TDRPVN A++   K+H++LGGGQ+AMSVTTTS  VGKFE RFF+++YE+EFG VKGHFGPIN L +NPNG S+ASGAEDGYVRLHFFD+DYL K+D +P+E E
Sbjct:    2 RPYLLQGHERPITTVQFNHDGDLLFTASKDLVPSVWRVENGERLGTYNGHKGTVWDLDCDRFTKRLLTASADTSCRLWDVRTGECIFVFNHKGPVRGVAWAEGSQMFVTISDPFVDHPAKICVFDAPEDQDPSTYTDPPRLEIELPKINGKVVKPTHVHWTALNEDLLVAFDNGQIRLYDP-ETGDL------KEEITAHEKKINRLRFNREKTLFITSSADFTSKLYDPVDLKHLKTYRTDRPVNDAVISEQKDHILLGGGQEAMSVTTTSGKVGKFETRFFNLVYEDEFGIVKGHFGPINALDINPNGRSYASGAEDGYVRLHFFDKDYLEKKDPVPEEDE 337          
BLAST of mRNA_A-nodosum_M_contig892.19.1 vs. uniprot
Match: A0A7S4NJI3_9STRA (Eukaryotic translation initiation factor 3 subunit I n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NJI3_9STRA)

HSP 1 Score: 363 bits (933), Expect = 5.890e-116
Identity = 177/352 (50.28%), Postives = 242/352 (68.75%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPTLWYAKTGERIGTYQGHQGAVWDLSVAWDSTRLISASADASARMWDVQTGRELVVYNHMGPVRSCAFAEGAQRFATVSDPFTDSPGLISVFETPDNVPTDQLEKIASLEIEVPP-----KMKATKVVWGAMNEKLIVSYTDGTLRTFDPLDATELQYAQVAKGEDGIHQKDINRLYPNKDRTLLLTCSKDYTAKLLNADTLEVLKTYKTDRPVNAAIMHPSKEHVILGGGQDAMSVTTTSSSVGKFEARFFHMIYEEEFGRVKGHFGPINVLAVNPNGLSFASGAEDGYVRLHFFDEDYLNKQDEIPDELEEGHKDAAD 1044
            RPILLKGHER+IT V YN+DGDL+FTA+KD +P++W ++ GERIGT+ GH+G +WDL V   S R++                  L+ + H GPVR  AFA+G+Q FA++SDPF D    IS+++ P++      +    LEI++P      ++  T +VW  +NE L V++ +G +R +DP+   EL+       E   H+K INR+  NKD+TL +T S D+T+KL +   LE LKTYKTDRPVN A++   K+H++LGGGQ+AMSVTTT+  VGKFE RFFH++YEEEFG VKGHFGPIN L +NPNG ++ASGAEDGYVRLHFFD+ YL+ +D +P+E E+G +  AD
Sbjct:   38 RPILLKGHERSITLVKYNHDGDLLFTASKDHVPSMWRSENGERIGTFNGHKGTIWDLDVCRFSKRVVXXXXXXXXXXXXXXXXXXLMDFKHHGPVRGVAFAQGSQMFASISDPFVDHNAQISIYDIPEDEDPSTYDDTPRLEIDLPKMPDGKRVNPTNIVWLNLNEALFVTFDNGAVRLYDPVTGDELE-------EIFPHEKKINRVSFNKDKTLFITSSADFTSKLYDVVDLEHLKTYKTDRPVNDAVISEKKDHILLGGGQEAMSVTTTAGKVGKFETRFFHLVYEEEFGSVKGHFGPINALDINPNGRNYASGAEDGYVRLHFFDKSYLDMKDPVPEEPEDGEEKVAD 382          
BLAST of mRNA_A-nodosum_M_contig892.19.1 vs. uniprot
Match: A0A7S3L4V7_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4V7_9STRA)

HSP 1 Score: 362 bits (928), Expect = 8.900e-116
Identity = 180/349 (51.58%), Postives = 246/349 (70.49%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPTLWYAKTGERIGTYQGHQGAVWDLSVAWDSTRLISASADASARMWDVQTGRELVVYNHMGPVRSCAFAEGAQRFATVSDPFTDSPGLISVFETPDNVPTDQLEKIASLEIEVPP----KMKATKVVWGAMNEKLIVSYTDGTLRTFDPLDATELQYAQVAKGEDGIHQKDINRLYPNKDRTLLLTCSKDYTAKLLNADTLEVLKTYKTDRPVNAAIMHPSKEHVILGGGQDAMSVTTTSSSVGKFEARFFHMIYEEEFGRVKGHFGPINVLAVNPNGLSFASGAEDGYVRLHFFDEDYLNKQDEIPDELEEGHKDA 1038
            RP LL+GHER IT + +N DGDL+FTA+KD +P++W+   G+R+GTY GH+G VWDLS    S RL++ASAD + R+W+VQTG  +  + H GPVR   +AEG+Q+F T++D F D P  ISV++ P+    +      SL I++P     ++  T V W AMNE ++V++ +G ++ +DP +  E+      K E   H+K INR+  N D+TLL+T S D+T+KL +    + LKTYKTDRPVN A++   KEH++LGGGQ+AMSVTTTS  VGKFE RFF+M+Y+EEF  VKGHFGPIN LA+NP+G S+ASGAEDGYVRLH FD+DYL+  D +P+E EEG  + 
Sbjct:    2 RPYLLQGHERPITSIEFNYDGDLLFTASKDHVPSVWWVDGGKRLGTYTGHKGTVWDLSCDRFSRRLLTASADTTCRLWNVQTGECIRHFTHTGPVRGVEWAEGSQKFVTINDSFMDHPPKISVYDVPEGQDPESYSDEPSLVIDLPKHATKRVAPTNVKWTAMNEDILVAFDNGMIKLYDP-ETGEM------KEEFSAHEKKINRVQFNIDKTLLITSSADFTSKLYDPVDWKHLKTYKTDRPVNDAVISDHKEHILLGGGQEAMSVTTTSGKVGKFETRFFYMVYQEEFATVKGHFGPINALAINPDGRSYASGAEDGYVRLHMFDKDYLDMVDPVPEE-EEGENEG 342          
BLAST of mRNA_A-nodosum_M_contig892.19.1 vs. uniprot
Match: A0A7S2I7B8_9STRA (Eukaryotic translation initiation factor 3 subunit I n=4 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2I7B8_9STRA)

HSP 1 Score: 357 bits (917), Expect = 6.030e-114
Identity = 173/351 (49.29%), Postives = 242/351 (68.95%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPTLWYAKTGERIGTYQGHQGAVWDLSVAWDSTRLISASADASARMWDVQTGRELVVYNHMGPVRSCAFAEGAQRFATVSDPFTDSPGLISVFETPDNVPTDQLEKIASLEIEVPP-----KMKATKVVWGAMNEKLIVSYTDGTLRTFDPLDATELQYAQVAKGEDGIHQKDINRLYPNKDRTLLLTCSKDYTAKLLNADTLEVLKTYKTDRPVNAAIMHPSKEHVILGGGQDAMSVTTTSSSVGKFEARFFHMIYEEEFGRVKGHFGPINVLAVNPNGLSFASGAEDGYVRLHFFDEDYLNKQDEIPDELEEGHKDAA 1041
            RPILLKGHER+IT V YN DGDL+FTA+KD +P++W A++G+R+GT+ GH+G +WDL V   STR+++                 + V++H GPVR  A+A+G+  FAT+SDPF D    IS+++ P +      +    LEI++P      ++  T +VW  +NE L V++ +G++R +D +   EL+       E   H+K INR+  N+++TL +T S D+TAKL +   L  LKTYKT+RPVN A++HP+K+H++LGGGQ+AMSVTTT   VGKFE RFFH++YEEEFG+VKGHFGPIN L VNPNG S+ASGAEDGYVRLHFFD+ YL+ +D +P+  E G ++  
Sbjct:    2 RPILLKGHERSITVVKYNYDGDLLFTASKDHVPSVWRAESGDRLGTFAGHKGTIWDLDVDRFSTRVLTXXXXXXXXXXXXXXXECIKVFSHRGPVRGVAWADGSNSFATISDPFVDHNAQISIYDVPQDESPSDYDDTPRLEIDLPKTNDGKRVNPTNIVWLNLNEALFVTFDNGSIRLYDTVTGDELE-------EIFPHEKKINRVSFNQEKTLFITSSADFTAKLYDVVNLHHLKTYKTERPVNDAVIHPTKDHILLGGGQEAMSVTTTRGDVGKFETRFFHLVYEEEFGKVKGHFGPINALGVNPNGRSYASGAEDGYVRLHFFDKSYLDMKDPVPEAPEGGEEEEG 345          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig892.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMX5_9PHAE1.330e-18577.59Eukaryotic translation initiation factor 3 subunit... [more]
D8LIC2_ECTSI3.290e-16485.77Eukaryotic initiation factor eIF3 i subunit p36 n=... [more]
A0A835ZF13_9STRA1.660e-16065.13Eukaryotic translation initiation factor 3 subunit... [more]
A0A6V2RRW4_HETAK2.040e-12955.33Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2NVM0_9STRA6.410e-12352.56Eukaryotic translation initiation factor 3 subunit... [more]
A0A7R9YCC7_9STRA1.800e-12254.57Eukaryotic translation initiation factor 3 subunit... [more]
A0A1Z5K121_FISSO2.140e-12254.52Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S4NJI3_9STRA5.890e-11650.28Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S3L4V7_9STRA8.900e-11651.58Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2I7B8_9STRA6.030e-11449.29Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig892contigA-nodosum_M_contig892:224857..233124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIC2
Preferred nameTIF34
PFAMsWD40
Model size2212
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K03246,ko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,ko03013,map00970,map03013
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0001525,GO:0001568,GO:0001732,GO:0001889,GO:0001944,GO:0002040,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009628,GO:0009651,GO:0009653,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010494,GO:0016043,GO:0016282,GO:0019538,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034399,GO:0034622,GO:0034641,GO:0034645,GO:0035239,GO:0035295,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048513,GO:0048514,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0051716,GO:0061008,GO:0065003,GO:0070013,GO:0070887,GO:0070993,GO:0071214,GO:0071470,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0072358,GO:0072359,GO:0080008,GO:0097159,GO:0104004,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234,GO:1990904
Exons7
Evalue1.74e-112
EggNOG OGsKOG0643@1|root,KOG0643@2759|Eukaryota
EC6.1.1.6
Descriptiontranslation initiation factor activity
Cds size828
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig892.19.1prot_A-nodosum_M_contig892.19.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig892 226010..230069 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870319.8944402-UTR-A-nodosum_M_contig892:224856..2260091680870319.8944402-UTR-A-nodosum_M_contig892:224856..226009Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig892 224857..226009 -
1680870319.9798877-UTR-A-nodosum_M_contig892:230069..2301161680870319.9798877-UTR-A-nodosum_M_contig892:230069..230116Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig892 230070..230116 -
1680870319.9927304-UTR-A-nodosum_M_contig892:232940..2331241680870319.9927304-UTR-A-nodosum_M_contig892:232940..233124Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig892 232941..233124 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870319.9068062-CDS-A-nodosum_M_contig892:226009..2261181680870319.9068062-CDS-A-nodosum_M_contig892:226009..226118Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig892 226010..226118 -
1680870319.9217863-CDS-A-nodosum_M_contig892:226613..2268101680870319.9217863-CDS-A-nodosum_M_contig892:226613..226810Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig892 226614..226810 -
1680870319.9315906-CDS-A-nodosum_M_contig892:227866..2279261680870319.9315906-CDS-A-nodosum_M_contig892:227866..227926Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig892 227867..227926 -
1680870319.9426358-CDS-A-nodosum_M_contig892:228359..2284671680870319.9426358-CDS-A-nodosum_M_contig892:228359..228467Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig892 228360..228467 -
1680870319.9571247-CDS-A-nodosum_M_contig892:229366..2295451680870319.9571247-CDS-A-nodosum_M_contig892:229366..229545Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig892 229367..229545 -
1680870319.969022-CDS-A-nodosum_M_contig892:229894..2300691680870319.969022-CDS-A-nodosum_M_contig892:229894..230069Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig892 229895..230069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig892.19.1

>prot_A-nodosum_M_contig892.19.1 ID=prot_A-nodosum_M_contig892.19.1|Name=mRNA_A-nodosum_M_contig892.19.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=276bp
MWDVQTGRELVVYNHMGPVRSCAFAEGAQRFATVSDPFTDSPGLISVFET
PDNVPTDQLEKIASLEIEVPPKMKATKVVWGAMNEKLIVSYTDGTLRTFD
PLDATELQYAQVAKGEDGIHQKDINRLYPNKDRTLLLTCSKDYTAKLLNA
DTLEVLKTYKTDRPVNAAIMHPSKEHVILGGGQDAMSVTTTSSSVGKFEA
RFFHMIYEEEFGRVKGHFGPINVLAVNPNGLSFASGAEDGYVRLHFFDED
YLNKQDEIPDELEEGHKDAADGVGM*
back to top

mRNA from alignment at A-nodosum_M_contig892:224857..233124-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig892.19.1 ID=mRNA_A-nodosum_M_contig892.19.1|Name=mRNA_A-nodosum_M_contig892.19.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8268bp|location=Sequence derived from alignment at A-nodosum_M_contig892:224857..233124- (Ascophyllum nodosum dioecious)
CAGAGGCCGATCTTGCTCAAGGGGCACGAGCGTGCGATCACTTGCGTCGT GTACAACAATGACGGCGACCTAGTGTTCACGGCCGCCAAGGACCAGATCC CCACCCTTTGGTACGCTAAGACGGGGGAGCGGATCGGGACGTATCAGGGG CACCAGGGAGCCGTGTGGGATCTCTCCGTGGCGTGTGAGTGACTCGCAGA ACGGGAGAGGGGGGAAAATAATAATATTTATAATAATAATAATAATAACA ATAATAATAATAATAGAAATAATAATAGAAATAATAATAATAATAGAAAT AATAATAATAGAAATAATAATATTTATAATAATAATAAGAGAAATAATAA TAATAGAAATAAAAATTATAATAATTATAATAGAAATAATAATAGAAATA ATAATAATTATAATAATAATAATAATTATAATAATGAATATATGATTTTA TAAAATAGTAAACAATCGAGACAAAATACGGTATAGATGTAGAGATTACA TCGTTCTAGACGTGCTGGGTGCGTATGTAGATCACGAAAATATACGAGCA AGCGTTCCACCCCCCACCCTTTTTTTTGTTCTCCCCTTAAAAAGACATGA AACTTGTCAGTTGAATTGAATTTTGGTTCGAATTCGGGCATTTAATCCGC GTCTGCTGTGGTCCTTCTGGTCCACTTTGGTATCTTTTTGAGCCTCGAGG TCAGAAGAGACCCGTGTTCCTTATTTTGCGCGAAAAACAAGAGAAATACT AAATAAAATACAAAAAATGTACGAGAGGCTACGACTACATAAATAAAAAA GGGGGAAAACAAACAAACAAAAAAACGCGTGTCGTTTTCTCGTATCCACT TGATATGAGACTTCACATTCCACTTGACGTTAGACTTGACATTGTAGATG AGGCAAGCGTCCCTGAGCTGTTCGTGATACTGGGGAAGGATACGAACGGA GCAAGTGTTTACAGTGAAGGTCAACCTGAGAAACGGAAGCAAGGCTATAT ATAGATATATAGAAAAGGAATCACGGGGAGAAGGAGTTGCTATATATATA TATATGTATTTATTTGGAGGGGGGGGGGGGAGAGCGTGTCACATTTACAC CACTGCCGTTTTGCGATTTCTGCTTTTTTTTTTTTTGTCTGTTAAAACAT GTCGCGCGTAATATCTACTAATGAATGTGTACTATTAATTGAATATTGTA GTAACGATGCTATCGGTGCTTGGGTCGCTCATTCGCGGTGGTGCAAGTTG TGCTCGTCTATCGCCCCTTTCCGCGCCCTCAAGTATTTTCTTCCAAGACA TATGCATGAGCGAGGCAGTGCTGTCCATCTATCTCACGTCAGTCCTTGTC CACGCCCAAAAGGGGCCGCGATCCGCGATCCGGAGCAGCACGAGTAGAGA CGTAGATTACCCCCGCAACGTACCTTTGCCACGAAACCGTGCATTGCGAT GACCATACATGCTGTACCTTTTACTTCAATACATAGTGGTACATGATACA AACAGTATGTCGGTTCAAGAGCTGTTTCAGTTGTTGGTGTTGATTCACAC ATTCAGCGTATTGTTCTTGCAACTGATAACAAGCTACGGTGACTCAACGA GTCAGCCATAGACCTATCAGATGCCAATCCCGCTCGTGGTCACGAAGAGG TCCGAAGGTCAACGAGTCACCACATCATCATGGTGACAATCCGCTAGCTC AAACCAACAGGGATCCAAATCGCGACAAAATTCTTGCCAGATCTAACCAC AACCGACAACATCGGAAACTTATCGGCGTCAAGACGGTGTCTTTGGGCAT AAACTACAGCTTCTACTGTCCGGAGTGCTGGCAGTATTTCTGAATCTGAA TTACAAGCTACAGAGAAGACAGTCTGATGTGCTGCCCATCCAACAAGGTC ATCAAGAGTGACTCGAAATGTTTTCCTAGCTTTTGGCGGGTTACGCGAAG ACAAGTTATGCGACACTTTACAACAAGCAATGACACCGACTGACCAATGT CAACACGGTTCATCAAACCTCCTTACTTCATATCGAGAACAACCTCGATC GACTCGGGCCAGCGCTCTTGGAATCAAAGCGGACAAATCGCGCTCCAATC AGTTTGAACAAGCCCCAAGTTTCTGAAGGCTATCACATCACACGTCATGC AGGAATGAGGGAAATTGTTATATCGAGGTCCATGACGATGGAAGCCTTGA GCTGGTGAAGCCGGCGCGCGAGCCAGCATCCAGCCGTCCAAAGCCCTGTG CATCCCTGACAATCGCCCCAGAAATCTTGCCCGTTCGTCGCTTCTTGTTA ACCCTCGTCGGAAGAAAACAGACCATTGTCAGAGATCGGTTTTCCCCTCA GAAACCTCCCGGTTCTCGCCTTTGATTCTCGCGCACAAGGGTTCAGCACT CCCCTGGCTCGTCGACGATCGAGCTTCCCTCCGCCCTAGCCGGATCGTCG TGAAAGAACAAACTTTTGTGTTCAGAATAGAGTACTTACTCGTTCAGAGC TAATCGCGCCCACTGTTGTAGAGATTTGCGGAGCACCCTCAGCCCTCGTT TTTGTTGGCGTTGGTGTTGTTTTTTTTGCAAATTTCTCCTGCGCCAATTT GATTGATCCATGGTGAATGTATGTGCTTCGTGGTATGTACTGGCAGCACT GTGTAGGGGTATTTTAAGGGGGGGGGGGGAATCATCTCACTTTTTACCTT TGGAGGCCTAAAAGCCCTGCCCATATGCTTAAAAAAGATGTACGAACGTA TGTACAGTATGTACTTCGGTATACATGGTTGGTCGTGTATGCATACCTAC ATTCAGTACGGATGTGTGTGTACTGCTGTATACATGTGTGTATATGTTTC CATCCATTGATGTATAGATGTATGTATGTGTAGGTGACTTTGGGTGATCG GTGTCATGTCTCTTTTTTCCTGTGCTGAGTAATACTATATGTGTTGTATC TTTGTATCTTCCCATCTCACCCCCCTCCCCTAAAACGTCTTCCACGATCA ACGAACAGGGGACTCGACGCGGCTGATCTCGGCGTCGGCTGACGCCTCCG CTCGAATGTGGGACGTGCAGACTGGGCGAGAGCTGGTGGTGTACAACCAC ATGGGGCCGGTAAGGTCGTGCGCGTTTGCCGAGGGGGCGCAGCGATTCGC GACGGTCTCAGACCCCTTCACCGACAGCCCAGGCCTAATCTCGGTGTTCG AGACCCCCGACAATGTGCCCACCGACCAGCGTGAGTTCGCGTGTACTTGT AGATCACTCTTTTGTTTTTTTCTTTTCTAGATCCTTATCGTTGATGTACG TACACATGAAGTGTTTGATTTTTTAAAAACTTGTTTAGTCCATCCAAATT ATTAAGGGCGGAGGGGGGAGGTGAAGAAAGGGTTTCGAGTTGGATGGAGG CGACTTCGCGCATCCCTCCTTCACCCCCCCCCCCCCCCCCTTTTTTTTTC AAGTGAGGGGTAGATAATGGAGGTTTCTTCTGTTTTTTACCGACTCTGAA GCCTGGGAACGAACGCACCCACCTACTACCTATCTGGCTCCCCTGCTTGA CTGCCTGTTTGTCTGTTTGTGTGACGCAGTGGAAAAGATTGCCTCTCTTG AGATCGAAGTGCCTCCTAAGATGAAGGCGACGAAGGTCGTGTGGGGGGCG ATGAACGAGAAGCTCATCGTTTCCTACACGGATGGTACTCTGCGAACGTT CGATCCCTTGGACGCCACGGAGCTGCAGTACGCACAGGTGGCAAAAGGGG AAGATGGGGTGATAGAATTGGAGGGGCGGGGGGCGGGATTCAGGAGCGGA CGGACCCGTACGGCTTCAGGTTTTTCGAGGCCTGTTATTTTGGAAAGGGT CAAGCGTTCGAGCAATGACCCTTCGCATATCTTGAACATCATTTTATTTT TATTTTTTAAAACTACACTGCTCATAGGAAGGATGAGAGTGAAAACGGCG CCAAAATTGGGGTTTCATGCTTCAAAATGAAGCGTTTTTTTAGGGGAGGG TCGCTTACCACTTTGCCCAAGAGTAAAAACCCTAATTTGGATTCATCGTG GTTATGCTTTTGCTCGCTCGTCGATCGTTCGCGTTCGCTTTCATATTTTT TCTTGTTTCATGTGTACTATGTAGTATTTGGGAGGGTGTTTATTGTGCTT TTCTGTTGGGTGCGGTGCTTGGAAGAAGAATGTCAGCGAGATTTGGTTAA TAGATTGAATCTGATGACATTTGATTGAATGCAATTTTATTTCATTGCTT ATAGAGTTGGTTAGATCTTAGTACAGCGGCGAGACGGCTTGTCTTTGAGT CTTCGTCTCGTGTGTGTGGTTTGTGTGTGTGTCTCTCTCTCTCTCTCTCT CTCTCTGTATATATTAAATTGCACATAACAGCGCAATCCGGCCCTGTCAT CCTTGTCATTCTATGCCACTCGCATTGATCCTCCCCAGGGGGGATCAATG ATACTTACTACGAAAACCTCTGATCAGACGTGTGCGTGTGTGTGTGCGGC GGCTCCGTGATGTCAACAAATTTCTTGTGTGTAACAAAATCCTTGTGTTA CACAAGGACATCAACCTTGTGTGTTACAAACTCCTTGTGTGTAACAAAAT CTTAGTGTTACACAAGGACATCAACCTTGTATGTAACAAACTCCTTGTGT GTAACAGATCCACCAGAAGGACATCAACCGGCTGTACCCCAACAAGGACC GCACGCTGCTGCTTACGTGCTCCAAGGATTACACGGCAAAGCTCCTGAAC GCCGACACTCTTGAGGTATAGTACTGGCAGGGGGATATGGGATATGATGA TGCGGGTTGATGGGGAGGGGGGGGGGTAGGATGATGCGCAGCAGCTCTTG CCCGTGGTGAGGTGCTCTATTTATCTGTCTTTGTGTGTATTTTCAATGTG TTTGGAATATCTTCTCTGCTGTGTGCCGTGCGTATTTATATCTTGTGTTA AGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGACATTTGCATGCA TCTTTTCACGGTATGTTTTTTTTGCTTGCATTTGTATACGTGTACCTTGT TCATGTGTACCTCTATTTTTCGTGTATATATTTTTGCGTGCATAGGTCTA ATCTGTTTACTCTTTGTGTTTGCCCCAACCGTCATCGCTGTCGCTGTCGT CCTCTCTCCGACCGCGCTGCGCGTGATGCTGTTCACCCACCTCACCAGGT TCTAAAGACGTACAAGACGGATCGTCCGGTGAACGCCGCGATCATGCACC CCTCCAAGGTAAAGACCCAACTATAAACACAACTAAAAACAAAACAACAC TGCCCATTTCTCGTTCGCATTTTTTTGCCTTATTTTTCTCTTATGCTTTC TCGACGCCTCAAGGCTGAAAGAATGTTTAATTTTTACCGTTTCACCTTGT CGACCTGTCAACGGACCGGCTGGCGCTGGCTGTCTTTTCACAAACGGTAA TGATACGCACAAAAAACAAACAAACGAACCAACAAAATACACACAAACAT ACACACGAGCGGTGTTTTTAAGAGGATAAATTCGCGATCCACGCAAACTT GACAAAAAAATGTGTGCAAAATCCCCCCCACCCCTCTCCGAAAAAAAACA AATACGAAGAAAAGCGCCTCAAACCAGTCACTACCACCAATCCACGGCAA AACCTCTTGACACAACACGACTTATTATTTACAGCAGAGAAGTCCAGATA GTATGGTATGGTATGGATTGGGAGTCCCGTCGTTGGAGCCTCGGGAGGAG GTAAAGCATTTTTTTTTATGAGCTGAAAGTTTCATGAATGTGAGGTATGA CAAGGAAAGGGTAGGCGAGTCAAACAGGGGGGAGAGACGGGGAGATCGGT GAAGATCCTCCCGTCGGAATCACAGACTGGCGGGATGCGACAGCACAGCG GTTAGTGTGGGATTAGTTAACGCTGGTGCTTTAAATGTGGCCTTCTTCAC TCCGCCCCATGTATGTATGTATGTATGTATGGTCATCACATGTAGCAGAG TACGGATCAACCGGGTAAGGTTGCCAATCGTGCTCGCTGATGGTCAGCTG AACAGGGAAAATGAATATTTCCCTGTCTCACCGTTCGCGCCTGAGAATTT GGTCTTGCGAGACGGGTTCGGCCGGCCCGTCCTGCGTCAGCCTCTGCCCA TTCTCCACACTCAGGCTGAACCTGGTGCTTACTCACGGGGTTCCTCCCGA TTTCCGTCCCCCCTCCAAACATCCCACAAAACCCCGCTTCGAACTCCCTA ATATCCCCCCTCCCTCCCTCTTCCTTCCTCCCCCCTACTCTTCCAATTTC CTTTTTCTTGACAGGAGCACGTGATTCTTGGTGGAGGACAAGACGCCATG TCGGTTACCACAACGTCCTCAAGCGTCGGCAAGTTCGAGGCGAGATTCTT TCACATGATCTACGAGGAGGAGTTCGGCCGAGTTAAGGGCCACTTCGGCC CCATCAACGTCCTGGCCGTGAACCCGAACGGGCTCAGCTTCGCGTCGGGC GCGGAGGACGGGTGAGGGAAAAGTGTTTTTTTTAGCGAGGGGGGAGGTGC GGGGGGGGGATAAAGTGCAGCAATATGCCCTTTTTTTCCAAGACTGATTG AGAACGCTTGCGGGAAGGAGCTCAAGTGTTGGAACCCTCTCCTAATCTTG ATAATATGTACTGCTTTTACCTAAAGGACCTGCGTGTGTGATGTGAAAGA ATGTGTTCCTTGCTTTAAGACAGAAAATGTGTGGTGTGAAGTGGCCGCTG CAGGGAGGATGGCTCTACGGCAGCATAGGTGAAACGCTTGCAATGTACGC TTTCCGCGGCGTCGAACTGAGCCTTGGTTTCGAAACCTCGGTATTTTTTT TCTCTTCCGCAGGGTTTTTGATGGCCCTGGTTGGGATTTTCGTGCCCTCT CGTTTTCCCCCTCGCCCTCTCTTCTACTGCATCTATCTACCCCCCCCCCC ACCCTTAATAACAAATCGATATAAAATTAATAAAAAAAAACGCTCGATAA TGGTAGGTATGTGCGGCTCCACTTCTTCGACGAGGACTACTTGAACAAGC AAGACGAGATCCCGGATGAGCTAGAGGAGGGCCACAAGGACGCAGCAGAT GGGGTTGGGATGTAGCGCCACCCGAAGACGAGGAGAACTAAAATAAAATA AACAAACAAAATGTTGTTTCGAGTGTTCCTGTTCTCTTCTTTCCTTTTTT TTCAGGAGAAAAAAAGTAAATACGAGTTTGAACTTCGTTTCGTTTTGTTG TTTCGTGCAGCATCGCGATGGGGTAGATAAGTAAAAGACTCCGATGCCAC CCCAACACAAAGGAAAGACTTGGTGTGGCGACTTCCTTCATGCGGTCCGC TGTCTACCGGAGAGCGAGCAGGGTTTTGATGTGGAACAGGAAGGGATTAC TTTTCTGGTAGATAATGGGAAGCTTAACATTACGGCAGATGTCGCTGCGG AGGCGCGGACTGTGGCTGTTTCCACCAATGTGTGGTGTCGGGTAGGGTGG GGTTCCACAAATGCCCCCTCCTTCTCCCCGGCGCCCCTCCTGCAGCAGCA GCAGCATCTCGCCTGTTTTTAGTTTTCCATCGTCGCACTCTACCGACGCC AGGCATGGATTATTCTGAATCACTCATTTTGCTTGTTCTTGCCGCAAAAA AGGGTTATTCGATTCAGTCCTGATCGGGTGTAAGTCGAGTCGAGTTGTCA CTATGGGGGTGGTGATTTTTGTCGCCAAGAGGGTGGGCAACAACGACACG TGCGTTTCACGCCATCTCCGAGCATCACAAACAGACGAGCCGAGCCGTCC GCTCCCCGCCAGCACATGACCCCGAACATGTCTTGAACGAACGAGCGGGC TGGAAGCTGCATTTGGAGCGAGCACCTGTAATGCGCTCGCGTGGATTTCT GTTTTCGGCTGACGTTCGTCATCCGTAGTCGTCAGATGGAGGAGGCGTTT TTTTTTTTGCCACACATCCAAGCTTCACTTCCACCCTCTACCGGACCGGT GAAGATGAACCTCGATTCGACTCTCGATTGCAGCCGCGAGCGTCGGCGTT CTTCCTTTTCTGAGTTTTGCGCTGTCCACCGCAACCTCCGCGAAGTTACC GCGCTACTAGTGTAGTTTTCTTGTGCGTATTATCACTAATGTTAAAGTCA TATTAATAGTAAGATGAGAACGCTACAGCTCGTGTTGCTTCTGCGACTGA GAGTCAGCGCTGACACTTTGAGCGGTAGTGGCAACGTGCCACTTGACGTT CACAAAAACGGATTCGGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig892:224857..233124-

>mRNA_A-nodosum_M_contig892.19.1 ID=mRNA_A-nodosum_M_contig892.19.1|Name=mRNA_A-nodosum_M_contig892.19.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at A-nodosum_M_contig892:224857..233124- (Ascophyllum nodosum dioecious)
ATGTGGGACGTGCAGACTGGGCGAGAGCTGGTGGTGTACAACCACATGGG
GCCGGTAAGGTCGTGCGCGTTTGCCGAGGGGGCGCAGCGATTCGCGACGG
TCTCAGACCCCTTCACCGACAGCCCAGGCCTAATCTCGGTGTTCGAGACC
CCCGACAATGTGCCCACCGACCAGCTGGAAAAGATTGCCTCTCTTGAGAT
CGAAGTGCCTCCTAAGATGAAGGCGACGAAGGTCGTGTGGGGGGCGATGA
ACGAGAAGCTCATCGTTTCCTACACGGATGGTACTCTGCGAACGTTCGAT
CCCTTGGACGCCACGGAGCTGCAGTACGCACAGGTGGCAAAAGGGGAAGA
TGGGATCCACCAGAAGGACATCAACCGGCTGTACCCCAACAAGGACCGCA
CGCTGCTGCTTACGTGCTCCAAGGATTACACGGCAAAGCTCCTGAACGCC
GACACTCTTGAGGTTCTAAAGACGTACAAGACGGATCGTCCGGTGAACGC
CGCGATCATGCACCCCTCCAAGGAGCACGTGATTCTTGGTGGAGGACAAG
ACGCCATGTCGGTTACCACAACGTCCTCAAGCGTCGGCAAGTTCGAGGCG
AGATTCTTTCACATGATCTACGAGGAGGAGTTCGGCCGAGTTAAGGGCCA
CTTCGGCCCCATCAACGTCCTGGCCGTGAACCCGAACGGGCTCAGCTTCG
CGTCGGGCGCGGAGGACGGGTATGTGCGGCTCCACTTCTTCGACGAGGAC
TACTTGAACAAGCAAGACGAGATCCCGGATGAGCTAGAGGAGGGCCACAA
GGACGCAGCAGATGGGGTTGGGATGTAG
back to top