mRNA_A-nodosum_M_contig8918.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8918.1.1
Unique NamemRNA_A-nodosum_M_contig8918.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8918.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8918contigA-nodosum_M_contig8918:14796..15932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size597
Hectar predicted targeting categoryother localisation
Exons3
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870317.153231-CDS-A-nodosum_M_contig8918:14795..148951680870317.153231-CDS-A-nodosum_M_contig8918:14795..14895Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8918 14796..14895 -
1680870317.1694756-CDS-A-nodosum_M_contig8918:15267..154341680870317.1694756-CDS-A-nodosum_M_contig8918:15267..15434Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8918 15268..15434 -
1680870317.1848292-CDS-A-nodosum_M_contig8918:15602..159321680870317.1848292-CDS-A-nodosum_M_contig8918:15602..15932Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8918 15603..15932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8918.1.1prot_A-nodosum_M_contig8918.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8918 14796..15932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8918.1.1

>prot_A-nodosum_M_contig8918.1.1 ID=prot_A-nodosum_M_contig8918.1.1|Name=mRNA_A-nodosum_M_contig8918.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=199bp
MIADIVVGAKAPSEAWKILNSIVENENSDRARELAKKQFEELSMNDDEPM
KECIARAKSLALDVKYHGIELTDQEISRRILNGLPPLYAPEKKKIALKTD
FSLAELEGGLPQHQLRHQRAQQHVHQPQQQQYQPRHQRKQQPAHQQQYQQ
RHQQYQQHEPQQQYQNYLHSAFVVQSGGNEDDVWIADSGASYHMTHDKT
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mRNA from alignment at A-nodosum_M_contig8918:14796..15932-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8918.1.1 ID=mRNA_A-nodosum_M_contig8918.1.1|Name=mRNA_A-nodosum_M_contig8918.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1137bp|location=Sequence derived from alignment at A-nodosum_M_contig8918:14796..15932- (Ascophyllum nodosum dioecious)
ATGATTGCAGACATAGTCGTAGGAGCCAAAGCTCCATCAGAGGCATGGAA
AATTCTGAACAGTATAGTCGAAAACGAGAATAGCGATAGGGCCAGAGAGC
TGGCCAAGAAACAGTTCGAAGAGTTGAGTATGAACGATGATGAACCTATG
AAGGAGTGTATCGCACGGGCTAAGTCTCTAGCCCTCGATGTAAAGTATCA
CGGTATTGAGTTGACTGATCAAGAGATCAGCCGACGAATTTTGAATGGTC
TACCCCCCTTGTATGCTCCCGAGAAGAAAAAAATTGCATTGAAAACAGAT
TTTTCTCTAGCCGAACTGGAGGGTGGTCTCGTTCGCGTGGAGGAGCTTAA
CAGGAGCTCGGACGGGACCGACGGCAGCCATGCGCTGTCTCCTGGCTTCA
AAGCCAGAAGCGGCGGGCGGAGCGGGGGACGTGGAGGCCACAATGGCGGT
GGACGCGGCAAGGGCGACGGTAAAGGTCGCCCACCGAATCAACGGCAGCC
GCAACATCAGCTGCGGCATCAGCGAGCGCAGCAGCACGTGCATCAGCCGC
AACAACAGCAGTATCAGCCGCGGCATCAGCGAAAGCAGCAGCCCGCGCAT
CAGCAGCAATATCAGCAGCGGCACCAGCAATATCAGCAACATGAGCCCCA
ACAGCAGTACCAGAAGTATCAGCCGCGGCATCAGCCGCAGCAGCCCGCAC
AGCATTCAGAGGGATGGGGTCCATCATGCGTTTGTTTCAGGTGTGGTAAA
CACGGGCATTTTCTGTCGGAGTGCCGTGCAGTACCCCCCACGCGTTCTCC
TGACCCGTACGCGCAAGCTGCGACTTATTCATATTCTGAAGACTACGCCG
ATTTTGGGAGCGGCCCTCCACCATCACAGTCAGCCCCCGCGCCGCCGGAC
ATGCATAGACCGCCCGTTCCGCCCGAGTCATCCTGGAGCTCCTTCTGTGA
ACAGGCCACCCTGGCGCAATTTGCGCCACCAGGCAAGTTTCATGTACCGA
ATGAAAGCGTGGTAGGGGATGTTACTGTACCGGGTAGCTACCTACACAGT
GCGTTTGTAGTGCAGTCGGGCGGCAATGAGGATGATGTTTGGATTGCCGA
CAGCGGCGCGTCGTATCATATGACGCACGACAAGACA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8918:14796..15932-

>mRNA_A-nodosum_M_contig8918.1.1 ID=mRNA_A-nodosum_M_contig8918.1.1|Name=mRNA_A-nodosum_M_contig8918.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=597bp|location=Sequence derived from alignment at A-nodosum_M_contig8918:14796..15932- (Ascophyllum nodosum dioecious)
ATGATTGCAGACATAGTCGTAGGAGCCAAAGCTCCATCAGAGGCATGGAA
AATTCTGAACAGTATAGTCGAAAACGAGAATAGCGATAGGGCCAGAGAGC
TGGCCAAGAAACAGTTCGAAGAGTTGAGTATGAACGATGATGAACCTATG
AAGGAGTGTATCGCACGGGCTAAGTCTCTAGCCCTCGATGTAAAGTATCA
CGGTATTGAGTTGACTGATCAAGAGATCAGCCGACGAATTTTGAATGGTC
TACCCCCCTTGTATGCTCCCGAGAAGAAAAAAATTGCATTGAAAACAGAT
TTTTCTCTAGCCGAACTGGAGGGTGGTCTCCCGCAACATCAGCTGCGGCA
TCAGCGAGCGCAGCAGCACGTGCATCAGCCGCAACAACAGCAGTATCAGC
CGCGGCATCAGCGAAAGCAGCAGCCCGCGCATCAGCAGCAATATCAGCAG
CGGCACCAGCAATATCAGCAACATGAGCCCCAACAGCAGTACCAGAACTA
CCTACACAGTGCGTTTGTAGTGCAGTCGGGCGGCAATGAGGATGATGTTT
GGATTGCCGACAGCGGCGCGTCGTATCATATGACGCACGACAAGACA
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