mRNA_A-nodosum_M_contig8914.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8914.1.1
Unique NamemRNA_A-nodosum_M_contig8914.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8914.1.1 vs. uniprot
Match: Q2TUH9_FUCVE (Ribosomal protein S10 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUH9_FUCVE)

HSP 1 Score: 168 bits (426), Expect = 1.880e-52
Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 1
Query:   16 FRCEVWCLSTSITSLKLVHNLLPFFVNYTGLSTRIKRFTLLRSPLGNKTSKDQFEKREYRIYFRVESKKPSFILAYINTLTYFNEVKYKVIISNTI 303
            +RCEVWCLST++ SLKLVH+LLPFF+NYTGLSTRIKRFTLLRSPLGNKTSKDQFE+REYRIYF VES KPSFILAYINTL YFNE+K KV ISNTI
Sbjct:    9 YRCEVWCLSTNLASLKLVHSLLPFFINYTGLSTRIKRFTLLRSPLGNKTSKDQFERREYRIYFCVESTKPSFILAYINTLNYFNEIKSKVRISNTI 104          
BLAST of mRNA_A-nodosum_M_contig8914.1.1 vs. uniprot
Match: A0A1L6KXZ1_9PHAE (Ribosomal protein S10 n=8 Tax=Sargassum TaxID=3015 RepID=A0A1L6KXZ1_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.720e-34
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = 1
Query:   10 VPFRCEVWCLSTSITSLKLVHNLLPFFVNYTGLSTRIKRFTLLRSPLGNKTSKDQFEKREYRIYFRVESKKPSFILAYINTLTYFNEVKYKVIISN 297
            + ++CEVW  S +I SLKL+  LLPFF  + GLS  IK+FTLLRSPLGNK SKDQFEKRE+R+YF VES KPS ILAY++ LT+ NEVK KV +SN
Sbjct:    7 IVYKCEVWSSSANIKSLKLLLFLLPFFQRHRGLSINIKKFTLLRSPLGNKRSKDQFEKREHRMYFYVESNKPSNILAYLHILTFLNEVKCKVKVSN 102          
BLAST of mRNA_A-nodosum_M_contig8914.1.1 vs. uniprot
Match: A0A0G2RL31_TUROR (Ribosomal protein S10 n=2 Tax=Sargassaceae TaxID=3014 RepID=A0A0G2RL31_TUROR)

HSP 1 Score: 122 bits (305), Expect = 5.490e-34
Identity = 63/94 (67.02%), Postives = 73/94 (77.66%), Query Frame = 1
Query:   16 FRCEVWCLSTSITSLKLVHNLLPFFVNYTGLSTRIKRFTLLRSPLGNKTSKDQFEKREYRIYFRVESKKPSFILAYINTLTYFNEVKYKVIISN 297
            ++CEVW LS +I SLKL+  L PFF  Y GLS  IKRFTLLRSPLGNK SKDQFEKRE+R YF +ES KPS ILA ++ LT+ NEVK KV +SN
Sbjct:    9 YKCEVWSLSANIKSLKLLFFLFPFFQKYRGLSINIKRFTLLRSPLGNKRSKDQFEKREHRAYFCIESSKPSNILACVHILTFLNEVKCKVKVSN 102          
BLAST of mRNA_A-nodosum_M_contig8914.1.1 vs. uniprot
Match: A0A1L2F1J4_9PHAE (Ribosomal protein S10 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1J4_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.820e-33
Identity = 63/94 (67.02%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   16 FRCEVWCLSTSITSLKLVHNLLPFFVNYTGLSTRIKRFTLLRSPLGNKTSKDQFEKREYRIYFRVESKKPSFILAYINTLTYFNEVKYKVIISN 297
            +RCE+W LS +I SLKL+  LLPFF  Y GLS  +KRFTLLRSPLGNK SKDQFEKRE+R YF VES KPS ILA ++ L   NEVK KV +SN
Sbjct:    9 YRCEIWSLSANIKSLKLLSLLLPFFQPYRGLSINVKRFTLLRSPLGNKRSKDQFEKREHRAYFYVESSKPSEILACVHVLALLNEVKCKVKVSN 102          
BLAST of mRNA_A-nodosum_M_contig8914.1.1 vs. uniprot
Match: A0A344AL90_9PHAE (Ribosomal protein S10 n=2 Tax=Sargassum TaxID=3015 RepID=A0A344AL90_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.170e-33
Identity = 61/94 (64.89%), Postives = 74/94 (78.72%), Query Frame = 1
Query:   16 FRCEVWCLSTSITSLKLVHNLLPFFVNYTGLSTRIKRFTLLRSPLGNKTSKDQFEKREYRIYFRVESKKPSFILAYINTLTYFNEVKYKVIISN 297
            ++CEVW  S +I SLKL+   LPFF  Y GLS  IKRFTLL+SPLGNK+SKDQFEKRE+R+YF +ES KPS ILA ++ LT+ NEVK KV +SN
Sbjct:    9 YKCEVWSSSANIRSLKLLFFFLPFFQRYRGLSITIKRFTLLKSPLGNKSSKDQFEKREHRVYFYLESSKPSNILACVHILTFLNEVKCKVKVSN 102          
BLAST of mRNA_A-nodosum_M_contig8914.1.1 vs. uniprot
Match: Q2TUD7_9PHAE (Ribosomal protein S10 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUD7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.360e-32
Identity = 61/96 (63.54%), Postives = 77/96 (80.21%), Query Frame = 1
Query:   16 FRCEVWCLSTSITSLKLVHNLLPFFVNYTGLSTRIKRFTLLRSPLGNKTSKDQFEKREYRIYFRVESKKPSFILAYINTLTYFNEVKYKVIISNTI 303
            ++CEVW LST++ +LKL   LLP  ++ TGLSTRIKRFTLLRSPLGNKTSKDQFE++EYR Y  +ESKK S ILA+++ L+  N VKYKV ++N I
Sbjct:    9 YKCEVWSLSTNLVNLKLWVLLLPLSLSSTGLSTRIKRFTLLRSPLGNKTSKDQFERQEYRSYLSIESKKASKILAFLDVLSQLNGVKYKVKVANKI 104          
BLAST of mRNA_A-nodosum_M_contig8914.1.1 vs. uniprot
Match: A0A0U1Z661_9PHAE (Ribosomal protein S10 n=6 Tax=Sargassum TaxID=3015 RepID=A0A0U1Z661_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 4.520e-32
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 1
Query:   16 FRCEVWCLSTSITSLKLVHNLLPFFVNYTGLSTRIKRFTLLRSPLGNKTSKDQFEKREYRIYFRVESKKPSFILAYINTLTYFNEVKYKVIISNTI 303
            ++CEVW  S +I SLK++  LLPFF  + GLS  IK+FTLL+SPLGNK SKDQFEKRE+R+YF +ES KPS ILA ++ LT+ NEVK KV +SN +
Sbjct:    9 YKCEVWSSSANIKSLKILLFLLPFFQRFRGLSINIKKFTLLKSPLGNKRSKDQFEKREHRVYFYLESSKPSNILACVHILTFLNEVKCKVKVSNKV 104          
BLAST of mRNA_A-nodosum_M_contig8914.1.1 vs. uniprot
Match: A0A6N3IW20_9PHAE (Ribosomal protein S10 n=11 Tax=Lessoniaceae TaxID=35120 RepID=A0A6N3IW20_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 2.320e-31
Identity = 56/95 (58.95%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   10 VPFRCEVWCLSTSITSLKLVHNLLPFFVNYTGLSTRIKRFTLLRSPLGNKTSKDQFEKREYRIYFRVESKKPSFILAYINTLTYFNEVKYKVIIS 294
            + + C+VW +ST + SL  +  LLP F++ TGLSTRIKRFTLLRSPLGNKT+KDQFE+REYR YF ++S+ P+ ILA+++ L Y N VK+KVI+ 
Sbjct:    8 ITYICKVWSVSTDLKSLNFLLLLLPLFISSTGLSTRIKRFTLLRSPLGNKTAKDQFERREYRSYFTLKSQNPAKILAFLDILKYLNGVKFKVILQ 102          
BLAST of mRNA_A-nodosum_M_contig8914.1.1 vs. uniprot
Match: A0A0U1WNP5_SARFS (Ribosomal protein S10 n=1 Tax=Sargassum fusiforme TaxID=590727 RepID=A0A0U1WNP5_SARFS)

HSP 1 Score: 115 bits (287), Expect = 3.010e-31
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 1
Query:   22 CEVWCLSTSITSLKLVHNLLPFFVNYTGLSTRIKRFTLLRSPLGNKTSKDQFEKREYRIYFRVESKKPSFILAYINTLTYFNEVKYKVIISN 297
            CEVW  S +I SLKL+  LLPFF  Y  LS  IKRFTLL+SPLGN  SKDQFEKREYR+YF +ES KPS +LA ++ LT+ NEVK KV +SN
Sbjct:   11 CEVWSSSANIKSLKLLVFLLPFFQRYQRLSMNIKRFTLLKSPLGNNRSKDQFEKREYRVYFYLESSKPSNVLACVHILTFLNEVKCKVKVSN 102          
BLAST of mRNA_A-nodosum_M_contig8914.1.1 vs. uniprot
Match: A0A8F0FCS1_9PHAE (Ribosomal protein S10 n=1 Tax=Dictyoneurum californicum TaxID=169784 RepID=A0A8F0FCS1_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 4.950e-31
Identity = 59/98 (60.20%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    1 KLRVPFRCEVWCLSTSITSLKLVHNLLPFFVNYTGLSTRIKRFTLLRSPLGNKTSKDQFEKREYRIYFRVESKKPSFILAYINTLTYFNEVKYKVIIS 294
            K  + + C+VW +ST   SL     LLPF ++ TGLSTRIKRFTLLRSPLGNK SKDQFE+REYR YF ++SK PS ILA+I  L Y N VK+KV++ 
Sbjct:    5 KKNIKYICKVWSVSTDFKSLNSFLLLLPFSLSSTGLSTRIKRFTLLRSPLGNKASKDQFERREYRSYFIIKSKSPSKILAFIGILRYLNGVKFKVVLE 102          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8914.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2TUH9_FUCVE1.880e-5286.46Ribosomal protein S10 n=3 Tax=Fucus TaxID=3011 Rep... [more]
A0A1L6KXZ1_9PHAE2.720e-3465.63Ribosomal protein S10 n=8 Tax=Sargassum TaxID=3015... [more]
A0A0G2RL31_TUROR5.490e-3467.02Ribosomal protein S10 n=2 Tax=Sargassaceae TaxID=3... [more]
A0A1L2F1J4_9PHAE1.820e-3367.02Ribosomal protein S10 n=1 Tax=Coccophora langsdorf... [more]
A0A344AL90_9PHAE3.170e-3364.89Ribosomal protein S10 n=2 Tax=Sargassum TaxID=3015... [more]
Q2TUD7_9PHAE1.360e-3263.54Ribosomal protein S10 n=2 Tax=Desmarestia TaxID=31... [more]
A0A0U1Z661_9PHAE4.520e-3261.46Ribosomal protein S10 n=6 Tax=Sargassum TaxID=3015... [more]
A0A6N3IW20_9PHAE2.320e-3158.95Ribosomal protein S10 n=11 Tax=Lessoniaceae TaxID=... [more]
A0A0U1WNP5_SARFS3.010e-3165.22Ribosomal protein S10 n=1 Tax=Sargassum fusiforme ... [more]
A0A8F0FCS1_9PHAE4.950e-3160.20Ribosomal protein S10 n=1 Tax=Dictyoneurum califor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8914contigA-nodosum_M_contig8914:13179..13484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870316.9574502-CDS-A-nodosum_M_contig8914:13178..134841680870316.9574502-CDS-A-nodosum_M_contig8914:13178..13484Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8914 13179..13484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8914.1.1prot_A-nodosum_M_contig8914.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8914 13179..13484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8914.1.1

>prot_A-nodosum_M_contig8914.1.1 ID=prot_A-nodosum_M_contig8914.1.1|Name=mRNA_A-nodosum_M_contig8914.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=102bp
KLRVPFRCEVWCLSTSITSLKLVHNLLPFFVNYTGLSTRIKRFTLLRSPL
GNKTSKDQFEKREYRIYFRVESKKPSFILAYINTLTYFNEVKYKVIISNT
I*
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mRNA from alignment at A-nodosum_M_contig8914:13179..13484+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8914.1.1 ID=mRNA_A-nodosum_M_contig8914.1.1|Name=mRNA_A-nodosum_M_contig8914.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig8914:13179..13484+ (Ascophyllum nodosum dioecious)
AAGCTCAGAGTTCCTTTCAGGTGTGAGGTTTGGTGTTTATCAACTAGCAT AACTAGTTTAAAATTAGTACACAATTTGTTACCCTTTTTTGTTAATTATA CAGGATTATCTACTCGAATTAAAAGATTTACATTATTACGTTCACCACtg gGAAACAAAACTTCTAAAGATCAATTTGAAAAACGTGAGTATCGTATATA TTTTCGCGTAGAAAGTAAAAAACCTTCTTTTATTTTAGCTTACATAAATA CATTAACTTATTTTAATGAAGTTAAGTATAAAGTAATAATTTCAAACACG ATTTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8914:13179..13484+

>mRNA_A-nodosum_M_contig8914.1.1 ID=mRNA_A-nodosum_M_contig8914.1.1|Name=mRNA_A-nodosum_M_contig8914.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig8914:13179..13484+ (Ascophyllum nodosum dioecious)
AAGCTCAGAGTTCCTTTCAGGTGTGAGGTTTGGTGTTTATCAACTAGCAT
AACTAGTTTAAAATTAGTACACAATTTGTTACCCTTTTTTGTTAATTATA
CAGGATTATCTACTCGAATTAAAAGATTTACATTATTACGTTCACCACtg
gGAAACAAAACTTCTAAAGATCAATTTGAAAAACGTGAGTATCGTATATA
TTTTCGCGTAGAAAGTAAAAAACCTTCTTTTATTTTAGCTTACATAAATA
CATTAACTTATTTTAATGAAGTTAAGTATAAAGTAATAATTTCAAACACG
ATTTAA
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