mRNA_A-nodosum_M_contig891.1.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig891.1.2
Unique NamemRNA_A-nodosum_M_contig891.1.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig891.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig891contigA-nodosum_M_contig891:34383..40608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size783
Hectar predicted targeting categoryother localisation
Exons2
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870316.3867083-UTR-A-nodosum_M_contig891:34382..344601680870316.3867083-UTR-A-nodosum_M_contig891:34382..34460Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig891 34383..34460 +
1680870316.4044805-UTR-A-nodosum_M_contig891:39903..399171680870316.4044805-UTR-A-nodosum_M_contig891:39903..39917Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig891 39904..39917 +
1680870316.4322908-UTR-A-nodosum_M_contig891:40436..406081680870316.4322908-UTR-A-nodosum_M_contig891:40436..40608Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig891 40437..40608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870316.4160645-CDS-A-nodosum_M_contig891:39917..404361680870316.4160645-CDS-A-nodosum_M_contig891:39917..40436Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig891 39918..40436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig891.1.2prot_A-nodosum_M_contig891.1.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig891 39918..40436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig891.1.2

>prot_A-nodosum_M_contig891.1.2 ID=prot_A-nodosum_M_contig891.1.2|Name=mRNA_A-nodosum_M_contig891.1.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=173bp
MYSFMDVDTIPEPQEDVFPISPSPANEEHPPGSSDEDESDDEEEEAGSKG
ERLRRGADDMTILDIDDELADDKVPLPLQIPSGYSFVSSVPAALIAALVK
QSIMLRLGVDWLMDHHATGSSAHTPPLRLQRVPRQRRQHAQREAAVGKVL
RGRDLGGGIFGATDALRGRPWN*
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mRNA from alignment at A-nodosum_M_contig891:34383..40608+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig891.1.2 ID=mRNA_A-nodosum_M_contig891.1.2|Name=mRNA_A-nodosum_M_contig891.1.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6226bp|location=Sequence derived from alignment at A-nodosum_M_contig891:34383..40608+ (Ascophyllum nodosum dioecious)
GGAGATGACTCTACCATTGATCTCTTCGACCTCGTGATCGTGGCCTCTTC
GACCTCGTGAACGGGATCTGTTTTGGAGGTAAGAATTTGGAATGAGGGGA
CTGACGCTCGCGAATATCTGCCATTCTGCTTATTATTAGACACGTTTGTT
CCTTTCTGGCTTCTGGCTCTATCCTTCAAGCCGATCGCGAGGCTTTTGTA
CCTAACTTAGAGTTTGAGCTATGGGGTATTCTGGTGGCAGTACTTAGTTA
GTCAGGTATATTACGTGCGTCCTCTGCATACCTTAGATATTGAGCTATCT
GCTATGGAGCGTTCGGGTGGTAGTACTTGGTCGTCAGTAGGTCAGGTATT
ATATTACGTGCGTGCGTCCTCTACCCACCTGCTACCTGCCCCTCATTCAT
TTTTGTGGCTCTCCACTGCTCTTCTACGATCAAGTGAATAGCGGTATCTG
GTACTTTCTGGGTTATACTATACTATACTAGACTATACTTTATATTCAAG
ACTTGAGTGGTGGTGGTCCTCTTTATCTACTCTTACTCTACCCTTCCTCG
AGACTCAATATCCCTGCCTACTTAACGTGGCCCCTTTTTCCTATAGGAAT
ATAAAACCTCATTTTTTGTTTTTTTTTTGTTACGGTTCGTCAAATGGTTA
TTAAGGGCATACAAATAGCGGCAGGGCTCCGCCCCTGATTGGCCAGGAAC
GGTCCAGAAACATGCCGACACCTCTACAACATTAAAAAAAAAGGTTGATC
GGTTGATCGGTACAAGAAAGGCGTGAATACGGGCGTTTTTGCCTCAAAAT
ACAATTTTGGTACAGTATCAACAATTTGAGGTGTGTGAGACTGCTGCTGT
ACACATCGCCACATCCTCCAAACGATAGAGTGCATAGTCATGTATCTTTG
TTCAGAAGGAAGTTTTGGGCTTCGAAGGTCATGTACCGAGGTTCGGCGGC
CGACTTTTTGGCTCTGAAGGGGTTTTGTGCAAATCCCAGCGCAAATGCCA
CAGAAAGGTGACTACACACATTTAGTCGACTTTCTTCGACTTAGTAGCAA
GTAGAAGGTTGTCCTCTTCGGAGGGTGCTCCAGCAGGGGTTGGGGAGGTC
TGCTGAGCAAAACAGCGGTCTCAGAGGTGATATCAAGCTTAAGAGCGTCC
ATACCTGCTGCTGTTTCTACTGCTGCATGGCGGGAGACCTGGCTCGGGCC
GACCAAGCACAACTCTCGATAATGGTAGAGTAGCTACAGTTTTTTTTTTT
AAAGTAAGAAACGGCCCAGACTCGGCATCTGCCGCAACCTAAGAAAGAGG
AACCCTTCCATTGGCTGACATCCTGCCACCCCACTTTACCGCCCGGCCCT
TACGGGCACGGCCTATCACAAGTCATATACAAACACAAATTTACCAAAAA
GCTCAAAAAGTGCCCGAGGTCGAATGCGTACAGTCGACTGACGGTTCATG
TGGAATACTGTATATGGTCAGAAGAAAAATAAATCACACTGAACACCCTG
CTCTCCGGTGGTGGTATTCCCCACACTGGGGGGGGGGGCGGATGACGATG
GACGCTGCGGGCTTGCTCAACATCAAGGCCGTGTTGGGCAAGCTGAGGTA
CACGGGGGCGTTGACTACTGAGCAATTTGGGCTGTTGAAAGGTAGAGCAA
AACACGGGGGAGTCACAGAACAGGTGTTGGCCTTGCTTAGCCGAGCATGG
GGACTACGGCGCAATAGTACACTCGACGAGGAGGAGTTCGCTGATGTTAT
CAAGATGGTGATCAGGGAGATGCCACAGCCCGGTGGGATCAGTGCGGTGG
AAAAAGCGGCGTGGTATCAGGGTGTCGACATCGAGAGGCAGGCTTGTCCA
TGGGCCGACTCATCCTTCTGCAACTCCTGGACCGGCAACACCTAAAAACA
AATCGTATGCGGTTCGTCCATTACGGCGCCCGAGGAAGAGTCCATTCTAT
TCGCCGACAACAGTACGGTCAGATCACCGACGAGTTCGAGCGCGTTTTGG
AGAGGGATTGCAACACGCTGCTCTGGCTTTTGACTCCGGGATGCACGGAG
GAGGTGCAACCTGTGGATGCCGGCTACGGACGGTTCGTCAAGGTCTACAT
GGTACAGGGGCTTGACGAGTGGCTCCTAAACGGCGATAACGCAGAGCTGT
GGGAGCCCTTCAAGCCGACCACGTCCGATCGTCGGATCTCGATCACTCAA
TAGACCCGCGGGGTCGTCGAGACGATCGACAGCGACATCAAAAACCGCAC
GCACCTGTTCGAGAAGACGAAACTAGCGATGACAGCGGACGTTAGCGACG
ACAACCTTAAGGGATGGTCTCTGGGCTGGATGGGTCTTACACGGGAGAGG
TGGTGCTGTCCTGGGGGTGTTTGCAGGATTTTCGTGAACATATGTTACAG
GCAAATGAAAAACAGTATATTAGAGTTTCTCTGTAACCCTCATCATATGG
GCACACAAGACGCGAGACACAACAGGGGCCCACAACTGGACTAACCATAA
AGGGGGTCGTCAAGCGGGCGAACATTAGTCTCCCAAACACGTACCAGACA
ATACAAAATACGGAAACCTATCCAAGTATTCGATTGGTTACAAAAGTCTA
CTAGGAGTCTCTTTCGTTCAGCCTCCCAGATGACTAAATGCAGATAGATG
ATTCTTAACTGCTCCTCTTGATCGTTTTCTTTTCTCTCCACAGAAAATCG
TTCAGACTCCCAGCAATCAATGTTTCATCGAACTTTCATCATTGGAATCA
TACCCCTGCGAATTTTCGGTAAATGTTCAACGTACCATATGATACTTAGC
ACTTGACATAAACACAACGGTTGATATACCATATCGATAAGGACATTCAT
TGCGTCATCAGCGCCCAACGTGTCAGTTATTTCTGCTCACAAATGAAGAG
TACACTTGAGAAACGTTCGTAACCTGATGACCATATACGGGTCGTATTTC
TAATTCGCGTATAACGTAATCACGACATCATCATACGTACGCGAAATTCC
ATATGTATACCAGTATATTTTCTCTACTACTGCGACGTTCAAACAGCTTG
TCTACGTTATTACGCACTTGTCACCAAGCTATACTTTACATGTATGGTGT
TCTGCACCGGTCGTTTACAACATCAGCTTAGTACGAAAACTACCTACTAT
ACCATCAAAATGCAACCGTACCCTTTTTGGCCGAAGCCAGAACCGAGATT
ACCATGGCCAGCTTGAGAGCTGCTACTCATCCATTTCGCTCGCGTTTCCT
AATCTCTGCCATGCTTGACGGAAACTTCTCCTCGCCTCTTGTACTTGCTT
GATAAACAAAATAAAATTTGCAGACAACAAGAAAATAGAAAAACACAAAA
AACACAAAAAAGGCAGAGCGAAACAGACACGCAAAATAGCCGTCCATCTG
GACAGGAAAGAATACTCTGTCACCCTCCCGGATCAAACTGCTTACTTTGA
TTGGTACCTCATGCTGTCACCCTTTGCTGCTGCCGGTTCTTCGGCAGTTT
CGCAAACTCCTCGCGAGCGATGATTTGTGCTGTAGGTGTTATTGTAGTCC
CCTCCTACTCCGGAATCCTTGTGAAATTAACGTGCAGAAAGCCATCGATA
TCGGCTTAAAAAGGGAAAGTCCCATCCTGCTCTGTTTGTTGCCTCACAGC
ATGCGGCACTCCGGGTTCGCCCAACCCCGGATCGGCCGCGGGCGACCGTC
GTGGGGATGAACCATAATGAGGTGGCAGTAGTGTCTCCAGAAACAGTTTC
TAGCCTCATTTTGTCTATCTCGGCATTCACTTCAAACGTATTTTCGTCGG
GTGTTGGCAGCCATCGAGGGTTGTATATTCCAATATAAAGGGGTTCTGAA
TCGAAGCCCGCATGTAGACTTCTCAAGGTCTGTGCATGCATTTCAGCTGT
AATTTCGATTCGGTCGAAACCACCCTTTCTCCTCCAGGCTTCCTTCTCCT
CGAGCATCCGCAAACGTTGCATTTGCTCTAGTCTGTGCGATGAGGCAAGC
TCCCTCACGCGTTCACGCACGCGCCAACTTGTTGCCGCTAATTTTACCAT
AGCTCTGCGGACATCACGCTCCTTGAAATACAACCGGAGTGTTTGAAACT
CTCGGTTCACCTGTGGATCTGCTGCTCAAGGCTCCCTCCAAAAGATCAGG
TTCCCTGGCGCTCGCGGCGCTCGCGGCGCTCCTCCGATCGGTGTCTCCTA
TAGTGGCCCAAATTAACCATTCGCTATAAAAGCTAGTCGTGGGTTTGAGT
TCCAGGCTGAGAGCTTTTCTCGGAAAACTCTGGAGGCCCTGGATACTTTG
GTTTGAGTGTGGGTTTTAGTTGAAAGGTAGCGGAACTAACCTTAGATCGA
AATATTAGCGGTGGTCCAAATTAACCAATTAGACTTGTCAGCGTTGTTAG
ACTATTCAGTGCTGACTAGTCTAATTGGTTAATTTGGGCCGCTACACTCC
CTCGCACTGGCGCTCCTTCGCAGCGCTCTCGATCGGTGGCGTCTTGGGTG
ATTGCGCCTTACGGCGCTCGTTTACCCCCCCCCGATTTTTCCAGCTGTCC
TGCAGACTGAGGTCGTGAAATCCTTCTTCTTCCACTCTAGGCTATAGCCT
CCCTCGGATGTCGCTCTTGTGGCGCTGCTTGCGTTCCTTCGGTCGGTGGT
ACACACTGGCGCTTCTTCGCAGCGCTCTCGGCCGGTTCCTCGGCCGGTGG
TTGTTCACGTACCGGCACTCTTCTCTTGGCGCTGTCGACCGGGCCGATGA
TATCTCTGCTCTCTTCTGGCAGGTGATCTTGGGGTTCCCGTTCGGGTGAC
CTCCAGGTCCAGGCTACAGCCTCCACCGGCTGTTGCTCTGGTAGCGCTCT
CCTCGCGCACCTGCGGCCGGTGGCTCCTTACACACTGGCGCTATCCGCAG
CGCTCTCGGCCGGTGGTGTCTCCGGCAGTGACACTCTAACAGCGCTCCTC
CTGGCAAACCTGTTGCCCCCACAGCTCTTCTGCAGGGTGGGTCTTCGTTC
TTTGAAGCGCTGCTCACCTTTTTCCAGAACCCCCAAATAATAAAAAACAC
AAAACACAACAATCTCCTATCGATGCTTTCGCTGACTTCAGAAACCTCCG
ATTACTCTTCTCACTAGTATAGTGGTGGGCCTCCTTTTCCGCCGGGTTAC
CCACTATTTAATAGTGTAACGGATGGTCTCTGAGCTGGATGGGCCTCACA
TGGGAGAGCGGTGTTGTATTCGGGTGTGTCCGCAAGTTCGACGTGAACAC
GTGCCACAGGCGAATCTATAAAGCAGGCATATTATTGTAGTGTCGCTGTA
GCCCACATCTTGAGTCTACACGAAAGACATGAGACACCAAAGGGACCCAC
AACTGGACTGACCATAAAAAGGGTCGTCAAGCGGGCCAACATTAGTCTCC
CAAATACATAGCACCCAATGCAAAATACGGAAACCTATCCTAGCATCCTA
TTGGTTACAACACTCTACTAATCCATCCCTATTTTAGAGTCTCTTTCGTT
CAAACCTCATCAACCTTGAAGGCGTGACACAAGCCATGTACTCGTTCATG
GACGTGGACACCATACCGGAGCCGCAGGAGGACGTGTTTCCGATCTCACC
TTCTCCCGCTAACGAGGAACACCCGCCGGGTTCAAGCGACGAGGACGAGA
GCGACGACGAGGAAGAGGAGGCGGGAAGCAAGGGCGAGAGACTGCGTAGA
GGCGCGGATGATATGACTATTCTAGACATCGACGACGAGCTTGCCGATGA
CAAGGTCCCCCTACCACTTCAAATTCCTAGTGGATATTCCTTCGTGAGCT
CAGTGCCTGCCGCCCTCATTGCAGCACTAGTAAAGCAATCGATTATGCTG
CGGCTGGGTGTTGACTGGTTAATGGATCATCACGCGACAGGTTCAAGCGC
GCACACGCCACCTCTACGACTTCAGAGGGTTCCTCGACAGCGACGGCAGC
ACGCGCAGCGTGAAGCTGCGGTTGGCAAAGTACTCCGAGGACGGGACCTC
GGCGGAGGGATCTTCGGCGCTACTGATGCGTTGCGCGGGCGCCCCTGGAA
CTGACGAGGAAGAGAGCGAGGAGGAGTTCAAGGAGGAGGGCAAGGAGGAG
GAAGAAGGGGCGGGAGGTCGGAGTGGTAGCGGTGTCCCCGGAAATGAGGG
AGAGGAGAGCGGCGAGGATGGAGGGGTGTGTGGGAGCGGTACTGATGCCC
TTGGAGCTAATTCTGAAGAGGAGGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig891:34383..40608+

>mRNA_A-nodosum_M_contig891.1.2 ID=mRNA_A-nodosum_M_contig891.1.2|Name=mRNA_A-nodosum_M_contig891.1.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=519bp|location=Sequence derived from alignment at A-nodosum_M_contig891:34383..40608+ (Ascophyllum nodosum dioecious)
ATGTACTCGTTCATGGACGTGGACACCATACCGGAGCCGCAGGAGGACGT
GTTTCCGATCTCACCTTCTCCCGCTAACGAGGAACACCCGCCGGGTTCAA
GCGACGAGGACGAGAGCGACGACGAGGAAGAGGAGGCGGGAAGCAAGGGC
GAGAGACTGCGTAGAGGCGCGGATGATATGACTATTCTAGACATCGACGA
CGAGCTTGCCGATGACAAGGTCCCCCTACCACTTCAAATTCCTAGTGGAT
ATTCCTTCGTGAGCTCAGTGCCTGCCGCCCTCATTGCAGCACTAGTAAAG
CAATCGATTATGCTGCGGCTGGGTGTTGACTGGTTAATGGATCATCACGC
GACAGGTTCAAGCGCGCACACGCCACCTCTACGACTTCAGAGGGTTCCTC
GACAGCGACGGCAGCACGCGCAGCGTGAAGCTGCGGTTGGCAAAGTACTC
CGAGGACGGGACCTCGGCGGAGGGATCTTCGGCGCTACTGATGCGTTGCG
CGGGCGCCCCTGGAACTGA
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