mRNA_A-nodosum_M_contig89.78.3 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig89.78.3
Unique NamemRNA_A-nodosum_M_contig89.78.3
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig89.78.3 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA)

HSP 1 Score: 243 bits (621), Expect = 6.640e-70
Identity = 124/251 (49.40%), Postives = 160/251 (63.75%), Query Frame = 2
Query:  236 EWTYAETE-EGETPYGPAFWGEAFPDCYGESQSPINLSQSQHVVKNANEYELEFHPTECASTELVFSPGDHQWAVDFADCEDRPSLTFDGDHYELLNVHIHSLSEHENGGSLRDAEIHMVHVREGTSDDLLVVGVLMDVGTYGVNSKLTNLWMILDQGQEEVTDADEDFVSAPYDLLPAGPEYSHYMGSLTTPPCTEGVKWIVMTDITMLSLAQLVTFRRAMGEHD--MVSAEGHTNRPVQPLNGREVVYV 979
            EWTY  T   G+ PYGP+ W + +PDC  ++QSPI+L+     V   + YEL+F+P EC S EL+F   +  W + F  C D P + F G+ Y LL +HIHS SEH  GGS   AEIH VHV+EGT D LLVVGVL D   YG N ++ +LW +LD G+   T   E F +  YD++P+ P +SHYMGSLTTPPCTEGVKWIVM+D   +S  QL  FR ++   D   V   G+TNRP Q LN R++ +V
Sbjct:   41 EWTYRRTSTNGQQPYGPSDWHKGYPDCGKKAQSPIDLAADLETVVKGSAYELKFYPNECKSDELLFQADERVWEILFGGCSDVPHVEFKGERYNLLQIHIHSPSEHMIGGSEHSAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVEIEHLWDVLDIGE---TTTKEVFTTRIYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMSKMQLDEFRTSVALFDDSKVDEHGNTNRPGQSLNDRKIFFV 288          
BLAST of mRNA_A-nodosum_M_contig89.78.3 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 7.380e-68
Identity = 123/258 (47.67%), Postives = 163/258 (63.18%), Query Frame = 2
Query:  218 DSEGTPEWTYAETEE-GETPYGPAFWGEAFPDCYGESQSPINLSQSQHVVKNANEYELEFHPTECASTELVFSPGDHQWAVDFADCEDRPSLTFDGDHYELLNVHIHSLSEHENGGSLRDAEIHMVHVREGTSDDLLVVGVLMDVGTYGVNSKLTNLWMILDQGQEEVTDADEDFVSAPYDLLPAGPEYSHYMGSLTTPPCTEGVKWIVMTDITMLSLAQLVTFRRAMGEHD--MVSAEGHTNRPVQPLNGREVVYVT 982
            D E   EWTY  T   GE PYGP  W   +PDC G  Q+PIN++          E  + F P+EC STELVF      W VDF+ C D P L + G+ Y LL  HIHS SEH  GG+   AEIH+VH+++ T+D LLVVG++ +V  YG N +L  +W ++D  Q+    A+E F++A Y LLPA P ++ Y GSLTTPPCTEGV+WI+M++   +S  QL  +RRA+  H+   VS  G TNRP+Q LNGR+V+YV+
Sbjct:   40 DDEAAAEWTYRATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDI---AEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYVS 294          
BLAST of mRNA_A-nodosum_M_contig89.78.3 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA)

HSP 1 Score: 220 bits (561), Expect = 2.090e-61
Identity = 120/255 (47.06%), Postives = 153/255 (60.00%), Query Frame = 2
Query:  233 PEWTYAE-TEEGETPYGPAFWGEAFPDCYGESQSPINLSQSQHVVKNANEYELEFHPTECASTELVFSPGDHQWAVDFADCEDRPSLTFDGDHYELLNVHIHSLSEHENGGSLRDAEIHMVHVRE---GTSDDLLVVGVLMDVGTYGVNSKLTNLWMILDQGQEEVTDADEDFVSAPYDLLPAGPEYSHYMGSLTTPPCTEGVKWIVMTDITMLSLAQLVTFRR--AMGEHDMVSAEGHTNRPVQPLNGREVVYV 979
            P+WTY   + EGE PY P+ W   +PDC G+SQSPINLS +   +  A E+ LE    ECAS EL F    H W +DF++C    +L+FDG  Y LL +HIHS SEH   GSL DAEIH+VH R+   GT  +LLV+GV +D   +G N  L  LW +L  G      A    V  PY+L+P+   YSHYMGSLTTPPC+E V+W+VM+  T++   QL  FR   A   +  V    +TNRP Q +NGR V  V
Sbjct:   47 PDWTYRRASHEGERPYSPSDWEIGYPDCGGDSQSPINLSANVGTLVEATEFNLELFGAECASKELDFEANGHVWEIDFSECTSTSNLSFDGGKYSLLQMHIHSPSEHMVAGSLHDAEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNVALEPLWDVLGSG------AKPRGVINPYELIPSDMAYSHYMGSLTTPPCSEIVRWVVMSTPTVIGDLQLDIFRDSVATATNSQVDERSNTNRPGQAINGRAVYIV 295          
BLAST of mRNA_A-nodosum_M_contig89.78.3 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.620e-36
Identity = 74/143 (51.75%), Postives = 96/143 (67.13%), Query Frame = 2
Query:  557 GGSLRDAEIHMVHVREGTSDDLLVVGVLMDVGTYGVNSKLTNLWMILDQGQEEVTDADEDFVSAPYDLLPAGPEYSHYMGSLTTPPCTEGVKWIVMTDITMLSLAQLVTFRR--AMGEHDMVSAEGHTNRPVQPLNGREVVYV 979
            GGS  +AEIH VHV+ GT D LLV+GVL D   YG N ++ +LW +LD G+      DE FV+  YD++P+ P +SHYMGSLTTPPCTEGVKWIVM+D   +   QL  FR   A+ ++  V   G+TNRP Q LN R++ +V
Sbjct:    3 GGSEHEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVEIEHLWDVLDIGKPTT---DEVFVTRVYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMGKMQLDEFRTSVALFDNSKVDEMGNTNRPRQSLNNRDIFFV 142          
BLAST of mRNA_A-nodosum_M_contig89.78.3 vs. uniprot
Match: A0A7S3XPW5_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPW5_HETAK)

HSP 1 Score: 130 bits (327), Expect = 4.650e-30
Identity = 81/203 (39.90%), Postives = 116/203 (57.14%), Query Frame = 2
Query:  260 EGETPYG--PAFWGEAFPDCYGESQSPINLSQSQHVVKNANEYELEFHPTECASTELVFSPGDHQWAVDFADCEDRPSLTFDGDHYELLNVHIHSLSEHENGGSLRDAEIHMVHVREGTSDDLLVVGVLMDVGTYGVNSKL----TNLWMILDQGQEEVTDADEDFVSAPY-DLLPAGPEYSHYMGSLTTPPCTEGVKWIVMT 847
            +G+T Y   P  WGE   DC GE+QSPIN+  +Q   K+ ++ +L  +  +C    LV +   H W VD ++C+   + T++G  YEL+  H HS SE+  GG   DAE+H+VH       +LLV+GV+ DV  YG N+       N W  +  G  EV+ +       PY ++LPA   Y H+ GSLTTPPC+EGV WI+M+
Sbjct:   70 DGDTQYACSPENWGEVNRDCEGENQSPINVVMAQKS-KSLSQLQLNKNNEDCDLLYLVDNY--HTWKVDMSECDGSYTTTWNGVDYELVQFHFHSPSENTIGGGYFDAEMHLVHA--DADSNLLVIGVMFDVVDYGGNNFFKEFWNNTWSDVSTGDSEVSLSS---TLDPYTEILPADLSYYHWNGSLTTPPCSEGVTWILMS 264          
BLAST of mRNA_A-nodosum_M_contig89.78.3 vs. uniprot
Match: A0A836C9F5_9STRA (Alpha carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F5_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.570e-29
Identity = 91/271 (33.58%), Postives = 136/271 (50.18%), Query Frame = 2
Query:  236 EWTYAETEEGETPY---GPAFW--GEAFPDCYGESQSPINLSQS---QHVVKNANEY----ELEFHPTECASTELVFSPGDHQWAVDFADCED--RPSLTFDG----DHYELLNVHIHSLSEHENGGSLRDAEIHMVHVREGTSDDLLVVGVLMDVGTYGVNSKLTNLWMILD------QGQEEVTDADEDFVSAPYDLLPAGPEYSHYMGSLTTPPCTEGVKWIVMTDITMLSLAQLVTFRRA--MGEHDMVSAEGHTNRPVQPLNGREV 970
            +WTY     G+  Y    PA W   E +  C G  QSPI++  S        + NEY      +     C  ++LV S   H   + + +C+D  RP L + G      Y+L  VH+H+ SEH   G    AE+H+VH+ E  S D+LV+ VL+DV       ++   W +++      QG+  +   D + +S PY LLP   +Y  Y GSLT PPCTE V ++++ + T ++ AQL  FR++  +     +   G   RP+QPLNGR V
Sbjct:   83 DWTYNPVCYGDGSYTVLAPADWHKNEDYAACAGPRQSPIDIVTSTLNDLGCSSDNEYLPAFSWQLQSGSCPFSQLVPSTK-HALELSYEECDDSTRPGLQYSGALGHSSYKLKQVHLHAGSEHSVDGQFGAAELHLVHINEADSTDILVLAVLLDVAETSEEPEVYKYWTLMNEAVANYQGESAI---DMNAISDPYALLPESKQYYTYQGSLTIPPCTETVTFVILAERTQVADAQLQAFRQSQTIAFGPTLDQSGSNARPLQPLNGRSV 349          
BLAST of mRNA_A-nodosum_M_contig89.78.3 vs. uniprot
Match: H6WB77_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB77_VAULI)

HSP 1 Score: 126 bits (316), Expect = 1.220e-28
Identity = 90/258 (34.88%), Postives = 124/258 (48.06%), Query Frame = 2
Query:  290 WGEAFPDCYGESQSPINLSQ-------SQHVVKNANEYELEFHPTECASTELVFSPGDHQWAVDFAD-CEDRPSLTFDGDHYELLNVHIHSLSEHENGGSLRDAEIHMVHVREGTSDDLLVVGVLMDVGTYGV-NSKLTNLW--MILDQGQEE-----VTDADEDFVSA-------------PYDLLPAGPEYSHYMGSLTTPPCTEGVKWIVMTDITMLSLAQLVTFRRAM--GEHDMVSAEGHTNRPVQPLNGREV 970
            WG  +PDC G  QSPIN+++       +   V  A  +++      C   +L +      W V F   C+  P++T +G  + LL  H+HS+SEH  GG   DAEIH VH        L VVGV++   +  V N +    W  M    G+++     V  +    VSA             PY +LPA   Y +Y+GSLTTPPC+E V WIVM +   +S  QL  FR  +   E  +V   G+  RP QP NGR V
Sbjct:    2 WGALYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDM----GACMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNVGNLEFAKYWEHMAYVSGKQQYASEIVEKSTATMVSATASSSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGLMDPEFPLVDNYGNNARPPQPTNGRMV 255          
BLAST of mRNA_A-nodosum_M_contig89.78.3 vs. uniprot
Match: A0A835YV18_9STRA (Alpha carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV18_9STRA)

HSP 1 Score: 131 bits (330), Expect = 6.450e-28
Identity = 91/270 (33.70%), Postives = 136/270 (50.37%), Query Frame = 2
Query:  236 EWTYAETEEGETPY---GPAFW--GEAFPDCYGESQSPINLSQS--QHVVKNANEY----ELEFHPTECASTELVFSPGDHQWAVDFADCED--RPSLTFDG----DHYELLNVHIHSLSEHENGGSLRDAEIHMVHVREGTSDDLLVVGVLMDVGTYGVNSKLTNLWMILD------QGQEEVTDADEDFVSAPYDLLPAGPEYSHYMGSLTTPPCTEGVKWIVMTDITMLSLAQLVTFRRA--MGEHDMVSAEGHTNRPVQPLNGREV 970
            +WTY     G+  Y    PA W   E +  C G  QSPI++  S  +    + NEY      +     C  ++LV S   H   + +  C+D  RP L + G      Y+L  VH+H+ SEH   G    AE+H+VH+ E  S D+LV+ VL+DV       ++   W +++      QG+  +   D + +S PY LLP   +Y  Y GSLT PPCTE V ++++ + T ++ AQL  FR++  +     +   G   RP+QPLNGR V
Sbjct:  387 DWTYNPVCYGDGSYTVLAPADWHKNEEYAACAGPRQSPIDIVTSTLEDRCSSDNEYLPAFSWQLQSGSCPFSQLVPSTK-HALELSYEGCDDSTRPGLQYSGALGHSSYKLKQVHLHAGSEHSVDGEFGAAELHLVHINEADSTDILVLAVLLDVAETSEEPEVYKYWTLMNEAVANYQGESAI---DMNAISDPYALLPESKQYYTYQGSLTIPPCTETVTFVILAERTQVADAQLQAFRQSQTIAFGPTLDQSGSNARPLQPLNGRSV 652          
BLAST of mRNA_A-nodosum_M_contig89.78.3 vs. uniprot
Match: A0A835Z7J7_9STRA (Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7J7_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.850e-27
Identity = 88/269 (32.71%), Postives = 118/269 (43.87%), Query Frame = 2
Query:  317 GESQSPINLSQSQ-----------HVVKNANEYELEFHPTECASTELVFSPGDHQWAVDFADCEDRPSLTFD-------GDHYELLNVHIHSLSEHENGGSLRDAEIHMVHVREGTSDDLLVVGVLMDV-GTYGVNSKLTNLWMIL--------------------------DQGQEEVTDADEDFVSAPYDLLPAGPEYSHYMGSLTTPPCTEGVKWIVMTDITMLSLAQLVTFRRAMGEH--DMVSAEGHTNRPVQPLNGREVVYVT 982
            G  QSPIN++ +             V        +EF P  C   ELV  P    W V F  C  +P +          G   +    H HS+SEH  GG   D E+HMVH     S   +V+GV++   G    N+++ N W  L                           Q QE V  AD D V+ PY +LPAG EY  Y+GSLTTPPCTE V W+VM +   ++  ++  FR +M +    +V   G  +RP QPLN R +   T
Sbjct:   19 GARQSPINIAANDVLADCPAVAVADVAIQVAPMAIEFFPAACTFGELVIEPSVKNWEVQFTGCAAKPHIEVSARTASEGGAGADCRRFHFHSVSEHVIGGGYYDGELHMVHANADKSK-YIVIGVMLAANGNLRDNTEVQNYWARLAVKAQELVAPPAAGATEKPVDQKELGSQDQEPVA-ADAD-VADPYAMLPAGTEYYTYLGSLTTPPCTEAVTWVVMAEPVTVTQNEMRVFRESMAKAHGSLVDQSGSNSRPPQPLNTRHISLCT 284          
BLAST of mRNA_A-nodosum_M_contig89.78.3 vs. uniprot
Match: H6WB76_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB76_VAULI)

HSP 1 Score: 123 bits (308), Expect = 8.550e-27
Identity = 89/266 (33.46%), Postives = 124/266 (46.62%), Query Frame = 2
Query:  281 PAFWGEAFPDCYGESQSPINLSQ-------SQHVVKNANEYELEFHPTECASTELVFSPGDHQWAVDFAD-CEDRPSLTFDGDHYELLNVHIHSLSEHENGGSLRDAEIHMVHVREGTSDDLLVVGVLMDVGTYGV-NSKLTNL--WMILDQGQE----EVTDADEDFVSA-------------------PYDLLPAGPEYSHYMGSLTTPPCTEGVKWIVMTDITMLSLAQLVTFRRAM--GEHDMVSAEGHTNRPVQPLNGREV 970
            P  WG  +PDC G  QSPIN+++       +   V  A  +++      C   +L +      W V F   C+  P++T +G  + LL  H+HS+SEH  GG   DAEIH VH        L VVGV++   +  + N + T     M    G++    E+ + D     A                   PY +LPA   Y +Y+GSLTTPPC+E V WIVM +   +S  QL  FR  +   E  +V   G+  RP QP NGR V
Sbjct:   75 PDMWGYLYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGM----CMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNIGNLEFTKYAEHMAYVSGKQKYASEIMETDATMAPAATPSSMASSTSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGLMDPEFPLVDNYGNNARPPQPTNGRMV 336          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig89.78.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F6MHT6_SACJA6.640e-7049.40Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
D8LB10_ECTSI7.380e-6847.67Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A872YNN4_SACJA2.090e-6147.06Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
Q9SMD6_9PHAE1.620e-3651.75Carbonic anhydrase alpha type (Fragment) n=1 Tax=L... [more]
A0A7S3XPW5_HETAK4.650e-3039.90Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma ... [more]
A0A836C9F5_9STRA3.570e-2933.58Alpha carbonic anhydrase n=1 Tax=Tribonema minus T... [more]
H6WB77_VAULI1.220e-2834.88Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A835YV18_9STRA6.450e-2833.70Alpha carbonic anhydrase n=1 Tax=Tribonema minus T... [more]
A0A835Z7J7_9STRA1.850e-2732.71Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=3... [more]
H6WB76_VAULI8.550e-2733.46Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig89contigA-nodosum_M_contig89:795743..804605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB10
PFAMsCarb_anhydrase
Model size2845
Max annot lvl2759|Eukaryota
KEGG rclassRC02807
KEGG koko:K01672,ko:K01674,ko:K04413
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
Exons10
Evalue3.85e-75
EggNOG OGsCOG3338@1|root,KOG0382@2759|Eukaryota
EC2.7.11.1,4.2.1.1
Descriptioncarbonate dehydratase activity
Cds size873
COG categoryP
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig89.78.3prot_A-nodosum_M_contig89.78.3Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig89 797597..804487 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870315.5665996-UTR-A-nodosum_M_contig89:795742..7975961680870315.5665996-UTR-A-nodosum_M_contig89:795742..797596Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig89 795743..797596 -
1680870315.7091439-UTR-A-nodosum_M_contig89:804487..8046051680870315.7091439-UTR-A-nodosum_M_contig89:804487..804605Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig89 804488..804605 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870315.5794065-CDS-A-nodosum_M_contig89:797596..7976741680870315.5794065-CDS-A-nodosum_M_contig89:797596..797674Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 797597..797674 -
1680870315.5920055-CDS-A-nodosum_M_contig89:797928..7980181680870315.5920055-CDS-A-nodosum_M_contig89:797928..798018Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 797929..798018 -
1680870315.6064537-CDS-A-nodosum_M_contig89:798374..7985241680870315.6064537-CDS-A-nodosum_M_contig89:798374..798524Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 798375..798524 -
1680870315.616927-CDS-A-nodosum_M_contig89:799313..7994331680870315.616927-CDS-A-nodosum_M_contig89:799313..799433Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 799314..799433 -
1680870315.6286309-CDS-A-nodosum_M_contig89:799885..7999841680870315.6286309-CDS-A-nodosum_M_contig89:799885..799984Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 799886..799984 -
1680870315.6396933-CDS-A-nodosum_M_contig89:800407..8004911680870315.6396933-CDS-A-nodosum_M_contig89:800407..800491Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 800408..800491 -
1680870315.6507385-CDS-A-nodosum_M_contig89:801627..8017121680870315.6507385-CDS-A-nodosum_M_contig89:801627..801712Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 801628..801712 -
1680870315.6625693-CDS-A-nodosum_M_contig89:803610..8036711680870315.6625693-CDS-A-nodosum_M_contig89:803610..803671Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 803611..803671 -
1680870315.674066-CDS-A-nodosum_M_contig89:803957..8039911680870315.674066-CDS-A-nodosum_M_contig89:803957..803991Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 803958..803991 -
1680870315.6853554-CDS-A-nodosum_M_contig89:804415..8044871680870315.6853554-CDS-A-nodosum_M_contig89:804415..804487Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 804416..804487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig89.78.3

>prot_A-nodosum_M_contig89.78.3 ID=prot_A-nodosum_M_contig89.78.3|Name=mRNA_A-nodosum_M_contig89.78.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=291bp
MPSAGITLAIIILIGAGGVIIGYLATEEHRRLDDSEGTPEWTYAETEEGE
TPYGPAFWGEAFPDCYGESQSPINLSQSQHVVKNANEYELEFHPTECAST
ELVFSPGDHQWAVDFADCEDRPSLTFDGDHYELLNVHIHSLSEHENGGSL
RDAEIHMVHVREGTSDDLLVVGVLMDVGTYGVNSKLTNLWMILDQGQEEV
TDADEDFVSAPYDLLPAGPEYSHYMGSLTTPPCTEGVKWIVMTDITMLSL
AQLVTFRRAMGEHDMVSAEGHTNRPVQPLNGREVVYVTSA*
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mRNA from alignment at A-nodosum_M_contig89:795743..804605-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig89.78.3 ID=mRNA_A-nodosum_M_contig89.78.3|Name=mRNA_A-nodosum_M_contig89.78.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8863bp|location=Sequence derived from alignment at A-nodosum_M_contig89:795743..804605- (Ascophyllum nodosum dioecious)
TCCACATAGGAAAGGTTGTCCACTCTTCCCTCACTTCTCTTCTAGCTCCT CTCTTCAAGGGCCCCCGCTCGTCTGCTCTCTCTCCTCTTCTGTATTTGTC TACAGATCAACACCCACAATGCCTTCTGCTGGAATCACCTTGGCGATCAT CATCCTTATTGGAGCTGGAGGCGTCATCATCGGATACTTGGTAAGCTCTA CTACATACATCCGGATGTGTGTATATATATATATATATACATCACTTCTG AGAGTAGCCACCTTAAAAGTTTTTCGGTTTTTTTCTCCCTCAGACCAGAT GGCTTCTTGATTCTCGCTCGAGGTATTTTTCACCATGATCACGCCCATTA GATGTGTTGAACGATCCGCTGTATGCAGCGTATCTGCCATTGACACGATA CTTCCGGCGTTGTTGGACGTTTACAGCGATCCGAAATTGGAATCAACTGA ACCCGTCCCCGTGGTTTCCCGGTGATCGCTCGCGTCACCCGCATCATCGC TGATTCTCGCGGGAGTTCGTGTGCCAGTATCTACAGTATGATTCGTCGCC TCTTCACTGCCGCTGACACAATCCGTTCCGACCCACGATGCCACATTGCT TCAACAACCAACAGGCCACCGAGGAGCACCGGAGGCTCGACGATTCGGGT AAGTAACAAGAGTTTCGTCGTCGATGCTTCACACTTACTCTGCGTCGAGA AGCTCTCTATTATGGTCTACGTTCGGAAATAATGTTGTATTGTTGTGGTC TACGTTCGGAAATAATCTGATACAATATTGATGTTATACTTGTAATAGTT CGGGGTCTCTGTGCAAGTACCAGGTAGTAGTGCTGACGATTCTGATCCCA TTGAGCAGACCACAAGAGATTTGCCGGGTCATGATATGCCACAGTACACA ACGCCGCCATCTTTTCACGCTCTTCGACGCGCAGAGGGCACGCCAGAGTG GACGTACGCCGAGACAGAGGAGGGGGAGACGCCGTACGGTCCTGCGTGAG TGCATATGGATGATACAGAGTGTATTATAATACCTGGTAGTAAATACTCA AGAGAAGTTGAGCCAATAAAGCAGCATAATATAAACCACCACCAGGAATC GTGCGTCCATCCATCGTATATTATTTTACCTGTTCTCTTGACTCGATTTC ACCGAAAATTATTGTAGCTAACAGTTGTTGCTGTTCTACAGGTACTGTAT TCCAAATGACGGTACTAAATTATGGATGCCAGAATCACTACGATCTAAAG ATGTCAGCCAGGCAAGAAAATGTTTCGAGTTCAGTCAGGAAACCGATGCT ACAGACAGGTACGACTCACTTCACTGACGTACGACTCATTTCACTGACGT CTGCCGGCTGGTGGTGCAAGTAGGTAATGACCCCAAAAAACACATCACAA ATAACGCAATGGTGTATTTCTTGCCGTGACAAAGAGAGGTCGCTTGCAAA TCTCCCTTCACGAGAGCTTGACAGTACTATAACTCGAACTTCTAAAGAAA TTATTGCTCTATTTTTTCATGTACGGACCCGGTTTTCTCTTTTGACACTG TATTGATATAATAGTACGAAGGCGTTGCCTGGTAGTAGTACTTGAAAGCC ACTCTCCGTCTCTTGGTTGTTGGCGTACTACGTAGTACGTACCCTCTGGT GTAGTACTTGAAAGCCCCTCTCTTGGTTGTTGGCGTACTACGTACTACCT GGTAGTACTTGGAAGTCCCTCTCTTGGTTGTTGGCGAATATCATGCGGGC CCGATCTGTTGTTGTTGTATTCTTCACATTAACCGATCGGGCCTCTACCA TACCCAGTAATATACGTGGTTGCCAATCCGGTACGTGGTCACAAAGAGGT ACCAAGGTCAACCGGTCACATCATGGTGACAACCCGCTACTCAGACCAAA AGGGATCCAAATCGCGACAAAAATCATGCGACTCTACAAAAAATCGATGT TAAAGCTGATGTGACGTCATTGCTCTAACTGCACACCGTATTATGCTACG ATTTATGAGTGTTACCGAGGCGAATATCGTGACGAAATTCAGGAGTCATG TTTTCTTGAACCGGCGTCCTTTCTCCTGTGTAACTTCAAGTACTCAAAAT TCGGCCGTTCCCTGCCCACGAGATCTTGGAATCGGCGGTTACCGTCGGTT TCCGCTAGGAGGAGATCTCATACACTACATGCGAGTACATCCACGTATCG TACGTACGCGCGCCGGTACTTTCAACATACCCACTTCATACCGATAGTGG GTGTGGGAAAGAGAGGTGAATATTAATTGGTCCATGGTAACTTGCCAAGG CAGTACTCGTTCGGAACTACCTTGAGGTTTACTGGCCCCGTGCCGGCGGA CTCTCGGCAGTAAATTATGCCATCGGTACGCAATTGCGTGACCCGATAAA CTCGGGACTGACCCGATGGCGTATGGCGGTTATAAATGAATAAGTAGCCG CCGCCGCAGAACGCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCT GAGTATGGATATGAGCAGGCTGAGGCGGAACGGGACTGCCGAACCCGTTT CGCGAGACCAAATTCTCAGGCGCGAACGCGGACAGGGAAATATTCATTTT TTCCTGTTCAGCTGACCACGTGCAGGACTGGTAACCTTACCCGGTTGATC CATACTCTTGCTATATGTGTGACTACACATATATGTAATAGTACGTATCT ATAGCTCTACGCTGTAGCTTTGACGAAATTTCAGATGATGTGTATCCGCG AAAGTTTGAAGTTGGTTGATGCTTTGGGATCGTCCTCGCGTGGATTTTTA GCCGCGTGTCTCTCGCCTATCCCGCTCTCAACCACGCTACCTACGCTGTG CCCGCTCGCGTCCCATCGTCCGTCGAACGTGCGGCTGGGGCAGTTTTTGG GGAGAGGCGTTCCCGGATTGCTACGGCGAAAGCCAGAGCCCCATCAACCT GTCGCAGTCTCAACATGTGGTCAAGAATGTGAGGTTTAAACTGCTAGGCA TGTCACGCGTTCGTCAATCACAGGGAGCCCTGCTGGACTGAGACGATTTC TCGACCCGGCATATAATACGTGGTATGCTTTTTTTACAGTATACGCAGTA CAACACAGTATATTATATACTAATAAAGCAGTGTTGAAGCGATCTTAAGG ACGTCATTGCGTCCAGCACCCCGCTGTGTCTAGTCTGTCTCAGCCGGTAT TAATATTACTATTACTATTAGTATTAGTATTACTGTAGTAGTGTTAATAG TATTAATAGTTTTAATAGTATTATTAGCAGTTGCTCTCGAGACTCGCCAG CAACCCCGGCGTGTGCTTATAATACGGAACGTGCGGCCGTTATCATCTTT CAGCAGCTGCTACGTTCTCCAAATGACACAAATATTTTTGTTGGTAGTTG TTGTAGTCGCGTCAAGGCGATTACACCGATTCACAAATAACCCCACTATT AGTAATAATGCACTTGCGCTTACGATTCATTCAACACGCCAGAAACGAGC AACAAAGGGATTGACAGACATGGACATGATAACATACCCCTCCTCCTTTA CTTTGGATTACTCGACAATAACCAAATAATATTAACCGAATAATATTTAC CGAATAATATTTACCGATAACCGACGAAAAACACCAATTCGTGGAGGATC ACCTCAAAAATTAAGGGGGAATAGACCGTACATCAAGTAGGGCTAGGACA GGAGATCAGCTACTATCCAAACCTCGAAGACAACGGCATCGTAGACAACG TAGTTACGCCGCGCCTGAACGTGGCAAGAGTGTGTACCTGTATCTGTACC TGTATATCTGTCGGGGTGGTACTGCGAAGAGTGTTTTATGTACAGTAAAC TAAATGCACACAGACGAAATACTGAAAACAGCACATTAAATCGGCCAGTA TATAAAAACGTGTCCAAAGGAAATATGCATTCAAGTAGACTTGAGCTTGA AGATTTTCCTTACTCGTTCTATTCGTGCGCTTGGGTGGCCAGACGTTGCC AAACATTGCGCTGATTCTCTTCTCTTCTCTTCTCTTCTCTGTATCTTCTC CTTGCCTTGCGCTCTCTGTCGCGAAAATGTTGTACATCCTTTCTTTTTAC GCCGTCTTTGCCAGGCAAACGAGTACGAACTCGAGTTTCACCCGACGGAG TGTGCTTCGACCGAGTTGGTCTTTTCGCCCGGAGATCACCAGTGGGCTGT GAGTTTCTGTACCAATTTTGGAGTTCGTTGCTTCCAAGACAGCCGTAATT TTCTCACCAAGATTCGTGATTGAAGTCGGGTTTTAAAAGCGGTCATTTGA TTCGTCAGTATCTCCTTGATATTAACAGATTGCTCGAGGGGTGGGCCGAG GAGATAGATGCGTGAAGTTGCTGAAGGTATAAAGTGGTGGACAAAACATC GCAGAGACCAACCTTTGAGCCTTGGCATTGTTTCTTCTCGCCCGTATCCG GTGAACCCCGAGTCCTGGCCGATACCCGTGCTCGAACCACTTCCTGACGT AAGCGATGTTGAAGGAATCACTCACCATACAGCTGCTGCTTCTTGACCAT TACTGTTTTTACCATGAACCTCTCACCCCCACCGTGCCCTCTCTAAACTC TATAAAAACTCTCTAAACCAGGTTGACTTTGCCGACTGCGAAGACCGACC TTCCCTGACATTCGACGGTGACCACTACGAACTGCTCAATGTACACATCC ACTCCCTTTCCGAGCACGAGGTGGGTCTGACTCACTCAACGCAAGTAACA AGTCACTCTTTATTTTGCTTAACTGCTTTGGGCCCATCGCATGTTCACGA ACCTTATTCTTTGGCAGAGGTCCAGCGCCAGATACTCGAGAGAGAGGTAC TAGTAGTGGGCCGGTTTCTTCATATTAATAGTTTTTACTTTTGAAACCTA CTCTTATTTTTTGAAGCGACCATCCGCGCGCTCGCGAAGTGCGTTTCACT AGGTAGGGGGCAGGTTGTTTTTGCAGTAGTATTCCGTGGGCGACGCACCT TCGAGTCGGCCGGGAATTTCAGACCCTCTCTCGAAAACTACCGTTAAACC CATCAAAGCCTCTCCCCGTGGGCTAATGAGTAAGAACTCTCCCTCTTTTG CGCGGGGTGCTGCGCCTTAACATCTCACCGTGTCTCGCCGTGCCGTACAC TTTTTACCCTCTCGCTCGCCAGAACGGGGGCTCTTTGCGCGACGCAGAAA TCCACATGGTCCACGTCCGCGAGGGCACCAGTGATGACCTTCTCGTAGTT GGGGTGCTCATGGACGTTGGTACCTACGGTGTGAACAGCAAGGTGTGATG AATGCGCCTACCACGTCGTCACCTATATTATATACTGGAGTAATAATAGT GTATGGTAGACAGTAATACACCCCAGATCACAGAAAATGGGCGAAACACG TGTAGATTCATCACATATAGCAGAGTATGGATCAACCGGGTAAGGTTGCC AATCCTGCTCGTGGTCAGCTGAACAGGGAAAACAATATTCCCCTGTCCCC GTGCGTGCCTGAGAATTTGGTCTCGCGAGACGGGTTCAGCCGTCCCGTCC CGCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACTTA CGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATTTATGAAACCGCAGTA CGTGTTTATTATGTATTGCTTTGCAATTAGTGTAGTGTAGCGTAGTCTAA TCAAAGCACGGGGAGAGGGGAGGGGGGGATAAACCCGCTGATCGCGCATT CCTTACCTTACCTTGCGTTACCTTACGTTACCTTGCGTTACCTTACCGAT ACACCGTGCGGATAAAAGTATATATCCCGTATTTGGTGGAATTTGCCGAC CGATATCGCTGGTCCTCCGCTTTAGGACGGGTCATCCAAAATGTGCTTCC AAGTCTTGGCCAGCCCAACCTCGGTTTTCTGCTGCTGCAGTGAAACTCTA CTGAACCACCCCATCCCCTCCCTTTTATTAGCTCTCGACTCGACTTGCGC CTTACCGACCCTACCGACCCTATCGATTCTACCACCCCCCCACAAAACGT CTCGCTCGCCGTCCTCGGCGCCAACCCGCAGCTTACCAATTTGTGGATGA TCCTCGACCAAGGGCAAGAGGAGGTCACAGACGCAGACGAGGACTTCGTG TCGGCTCCGTACGATCTGCTTCCTGCCGGCCCGGAGTACTCCCACTACAT GGGCTCCTTGACGACCCCTCCCTGTACCGAGGTGACACCAGACAACGGAA TTTCCCGGTAGAGGGGCGTTCACGATAACCTCTAGCCCCCCGTTCGCCTG GTGTCTCACGAAGGATCGTACGATTGATTTAAACGTTTGGCTGGGTTGAG ACTCCTTTCGAATGACGGCACGTACTTATCCGAAATAATACGAGTCGAGA TGCCTGCCTTCCAAGTTCGAACTCCCGCCGTATGGAGCTCGTGTTACCTT CACGATCGCCGAGGAACCGTTCGTGCGCCTTGATCCGTGACGGCGCTGAA AGTCCTGTTTCGGTGGACTTTTCTCGAACTGCTTGTCTTTCCGTTGGCAC ACGACGCCGCCCACTGTCCGAATCCCTACCGCGACAGGGGGTGAAGTGGA TCGTCATGACCGACATCACCATGTTGAGCCTCGCCCAGCTGGTCACTTTC CGCAGGGCTATGGGAGAGCACGACATGGTGGGTGGCGTACACAAGAGGCG GGGACTGGATAAACCAAAAACGTCGAGAGGGAAGGGAAGTGGCGGGGAGG GGATGTAACCACGGTCAATCCGTTACCGAAAGACTCGCGGTAAAAGCAAA AATATGTTTTGGTTGGTGTATATGTTACCAAGTAACGAAAGATGAACCCC GAGCTGATCGAAAGTGCTTACAGGCTCGCCACTACATTCGACCGTTTCGT TCCACCGCGCTCTCCACTGTCGGCGTTATAGGTTAGCGCGGAGGGCCACA CGAACCGTCCGGTACAGCCACTCAACGGTCGCGAGGTGGTCTACGTGACG TCGGCCTAGACCGTCGGCACCCAAGTTATAGATCTAGAGTCGCGCGGGTA TTTCACGCTCGTTGTGTTTCTTGTTTTTCCGGCTGATACATCAAAAGCAA AGCAGTTTTGTACTGATTCACGAGTCTTGCCTCGCCCGCGAATCGCAGGG CGTGGTCAGTTTTTGTTGACAGCATGTCTTCTTTCCGAAGGCATCAGAGG AGGAGTACACTTTTGTTGATACATTCGGTCGTGTCTCGAGCAGCGTCTTA CCGGGCGAAAAAAAAGCACATTCGCCGCGTGGGATCCGACGGGAAAAAAA ACTCACAGATTCTGGCTTGTTGGCGAGTGTCGAGAAACGATGGGGGGGCG CCCAGTTTCTCGCCTTTTCGGCGCGAAGTGCTATGCCTCGCCTCCTGTAG TGACCAGGTCGGTGGTTCGGCGATGAGAAGCAGGGAAGTGGGTCACACAC GTGTGTGCGGGGAGAACTTGGCTCGTAAAATGTCGTTAAAGAATGAGTAC ACGGCCGATCGACGTTCCACTGCGTCTACGGCATCTCATCCTTTAGTTTG TCGTCTTGCGTGGGACGACCAAGTGCTGTGAGCGGGGTCGTAATCGGTAG CTTTCGAGTTTGTGATTCCGGCTAGATGGCGGCGATGGCTCCCTTGTTAA CAGCGGGTGTTTGTTTTATTGCTTTTTCGCGAGTTTCGTATGAAACAATT TCATGTTTTACTTGCGGGGATTTAGAAATTCTCGTTATGATACACTCACA TCGCGGTGCATTCTTAGAGGTAGGGCCGTTTTGTCGTTTTGTTTTTTTTC AGACGAGCGAAATGATCCTAAAAAAAAAGAAGAAAGGCGCGCGGGGAACG GTTCCGTACAAGAAGGCGGCGTACGATTAAAGAGAGGGGTAGGCCTCTTG TCGAGGAAAAGCGAGGGTTGATTTTGGAACTTACTCGCAAAATAGTTTTT TTTGGCGTGGAAAGCAGTTGGCCCAAAGCTCGACTCGACGATGAACGTTC CAAGAAAGATTCGCCCCTGCACCGCGGCAGGGTAACGATTGGTCTGTAAG GTCTGATTGGTCTGTATATCGCATGGGATATCGCGTGGGAGGGGCGAGAA GATGGAAGATGGCGGGAACTTCACCTTAGAGATTATGAATTTAGAGCTGC TGTGAGGATGGGTCGACGTAAGCCCTCCCCCTGCCCCTCCACCTGCACAT TGACGCCGCGCTAGAGCTAGAGAGCCAAGTTGTAAATGTATATGTTACGT CGGTGCTACGACATGCCACGGTGCAATCGCTTTTGCTCGTGTGTTTTTCA GCTTGTTGTATAATATTTAGAGCTAGCCCTTTCGACAAGTAAGTCCATCG CCGTTCGTGCCAGGGCCAGAGGTTTGGAGTACTATTAATCGTAGATTGAC ATCAAATCACAGTACTTCATTCAGCAGTTTAGGTCCGGCCGTACGGCACG AGAGCAGCAGCTGCTGCAGCAGACACAATTACTTGTTTGTATACATTAAC GTTGAGTTTTGTCGACGTTGATGGTGATGGACTTCTCCTGTACTGTACTG TACTGCAGCAGTAGTAGGGAAAAGAGGGCTCATGTCCACAACGGAGGTAG CTTTTTAAAAAGGGGAAAGCCATCAAGGTCTAGACGTATTTTCGCCGAAT TTGTTTCGTTTGGGGAGGATAAAACTTCACCCATTTGTTTTTTATTGTTT GTTTATTTTATGTTTTGTTTGTATTTTAGTTATCAGCGATGCTTTTGCAC TGCTCTATGTACTAGTAATAGTAAATGAAATAAGGAGACGGACCAGGCCT TCCTGAGGAGTGAGGAGTGAGGAGGCACCATGGACGAAGGAGGTGGATGG AATGATAATGAAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig89:795743..804605-

>mRNA_A-nodosum_M_contig89.78.3 ID=mRNA_A-nodosum_M_contig89.78.3|Name=mRNA_A-nodosum_M_contig89.78.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=873bp|location=Sequence derived from alignment at A-nodosum_M_contig89:795743..804605- (Ascophyllum nodosum dioecious)
ATGCCTTCTGCTGGAATCACCTTGGCGATCATCATCCTTATTGGAGCTGG
AGGCGTCATCATCGGATACTTGGCCACCGAGGAGCACCGGAGGCTCGACG
ATTCGGAGGGCACGCCAGAGTGGACGTACGCCGAGACAGAGGAGGGGGAG
ACGCCGTACGGTCCTGCTTTTTGGGGAGAGGCGTTCCCGGATTGCTACGG
CGAAAGCCAGAGCCCCATCAACCTGTCGCAGTCTCAACATGTGGTCAAGA
ATGCAAACGAGTACGAACTCGAGTTTCACCCGACGGAGTGTGCTTCGACC
GAGTTGGTCTTTTCGCCCGGAGATCACCAGTGGGCTGTTGACTTTGCCGA
CTGCGAAGACCGACCTTCCCTGACATTCGACGGTGACCACTACGAACTGC
TCAATGTACACATCCACTCCCTTTCCGAGCACGAGAACGGGGGCTCTTTG
CGCGACGCAGAAATCCACATGGTCCACGTCCGCGAGGGCACCAGTGATGA
CCTTCTCGTAGTTGGGGTGCTCATGGACGTTGGTACCTACGGTGTGAACA
GCAAGCTTACCAATTTGTGGATGATCCTCGACCAAGGGCAAGAGGAGGTC
ACAGACGCAGACGAGGACTTCGTGTCGGCTCCGTACGATCTGCTTCCTGC
CGGCCCGGAGTACTCCCACTACATGGGCTCCTTGACGACCCCTCCCTGTA
CCGAGGGGGTGAAGTGGATCGTCATGACCGACATCACCATGTTGAGCCTC
GCCCAGCTGGTCACTTTCCGCAGGGCTATGGGAGAGCACGACATGGTTAG
CGCGGAGGGCCACACGAACCGTCCGGTACAGCCACTCAACGGTCGCGAGG
TGGTCTACGTGACGTCGGCCTAG
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