mRNA_A-nodosum_M_contig89.50.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig89.50.1
Unique NamemRNA_A-nodosum_M_contig89.50.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig89.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig89contigA-nodosum_M_contig89:378658..379752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra96986
PFAMsMethyltransf_16,ROK
Model size557
Max annot lvl4776|Peronosporales
KEGG rclassRC00002,RC00017
KEGG koko:K00847
KEGG ReactionR00760,R00867,R03920
KEGG Pathwayko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.04e-06
EggNOG OGsKOG2793@1|root,KOG2793@2759|Eukaryota,3QJ7A@4776|Peronosporales
EC2.7.1.4
DescriptionROK family
Cds size555
COG categoryA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870312.8444219-CDS-A-nodosum_M_contig89:378659..3787371680870312.8444219-CDS-A-nodosum_M_contig89:378659..378737Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 378660..378737 -
1680870312.862322-CDS-A-nodosum_M_contig89:379275..3797521680870312.862322-CDS-A-nodosum_M_contig89:379275..379752Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 379276..379752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig89.50.1prot_A-nodosum_M_contig89.50.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig89 378660..379752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig89.50.1

>prot_A-nodosum_M_contig89.50.1 ID=prot_A-nodosum_M_contig89.50.1|Name=mRNA_A-nodosum_M_contig89.50.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=185bp
LLQYDFPKKRQFTYKVVLVVPCVPVNVMDEMDMKAPPGPSKGVHNSSNLT
PREPRLSLDRDNLLGLFGSISHWQDIYHTPREPRATNNMNHNGAPTLGLD
FLRASEGTITITYTLGSSGNNFEDKDKDEAKDEDETQEATLVLGQDLGKL
GLGAVVWDCGVGLAAFLGRHHHLVAHKKVLDLGTG
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mRNA from alignment at A-nodosum_M_contig89:378658..379752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig89.50.1 ID=mRNA_A-nodosum_M_contig89.50.1|Name=mRNA_A-nodosum_M_contig89.50.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1095bp|location=Sequence derived from alignment at A-nodosum_M_contig89:378658..379752- (Ascophyllum nodosum dioecious)
CTACTGCAGTATGATTTTCCGAAGAAACGACAGTTTACGTACAAAGTAGT
TCTTGTAGTGCCGTGTGTACCTGTAAACGTAATGGATGAAATGGATATGA
AAGCGCCACCAGGACCCAGCAAGGGCGTGCACAACAGTTCAAATCTTACT
CCAAGAGAACCTCGATTATCTCTTGATCGTGACAATCTATTGGGCCTCTT
TGGATCTATTTCTCATTGGCAAGACATCTATCACACTCCGCGTGAGCCAA
GAGCTACTAATAATATGAATCATAATGGTGCTCCAACGCTGGGGCTGGAT
TTCCTTAGGGCTTCTGAGGGTACAATCACAATCACGTACACTCTGGGCTC
CTCTGGAAACAATTTTGAAGATAAAGATAAAGATGAAGCTAAAGATGAAG
ATGAAACGCAGGAAGCCACGCTCGTGTTGGGCCAAGATCTTGGCAAGCTA
GGGCTTGGTGCAGTCGTTTGGGACTGTGTAAGTGAAAAAATCCCGCCTAA
AAACACTACCAGGTATTTTCGTATCATGTTGATTTAGACAGCAGCTCTAA
AGAGTTACGGCCCCAACCATGGGATATCAATATCTACTTGTACACGATCC
ACCCAGAATGTCTGCTTGAGTACCAAGTACCATCCATATGCCAGGGACTG
ACGTACAATAATAAACGTTTTGACATTTTCCCTCCTGGCTGATTAGGGAT
GCTCAGAAGGTCTAGATCCTTTCAGTCTGCTGGTATAGTGGTACAGTATT
ATAGTTGTTGATGGGGTTGCTTTGGGCTTAAAACAGACCACAGTTACACC
ACACTATTCTAGGCGCGTTTTTGGTTTTCAACCGGATTTAAAGCGCTTCT
TGGCCTCGACGGCTTGTACCAGAGGATAAGATTATTTTAGTATTCCTTGG
TCATAGTCATGGTCATGTTGCGCTCGCAGAAGAGGCAGTAGTGCACAATA
ACGCCCATTCTATCGCCGACACGCATCGTATCCTTACCTTCCGCCTTCTG
CAACGCTGCACGAAGGGTGTGGGTCTTGCTGCGTTCCTCGGCCGACACCA
TCATCTCGTAGCTCACAAGAAAGTTCTAGACCTCGGTACTGGCAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig89:378658..379752-

>mRNA_A-nodosum_M_contig89.50.1 ID=mRNA_A-nodosum_M_contig89.50.1|Name=mRNA_A-nodosum_M_contig89.50.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=555bp|location=Sequence derived from alignment at A-nodosum_M_contig89:378658..379752- (Ascophyllum nodosum dioecious)
CTACTGCAGTATGATTTTCCGAAGAAACGACAGTTTACGTACAAAGTAGT
TCTTGTAGTGCCGTGTGTACCTGTAAACGTAATGGATGAAATGGATATGA
AAGCGCCACCAGGACCCAGCAAGGGCGTGCACAACAGTTCAAATCTTACT
CCAAGAGAACCTCGATTATCTCTTGATCGTGACAATCTATTGGGCCTCTT
TGGATCTATTTCTCATTGGCAAGACATCTATCACACTCCGCGTGAGCCAA
GAGCTACTAATAATATGAATCATAATGGTGCTCCAACGCTGGGGCTGGAT
TTCCTTAGGGCTTCTGAGGGTACAATCACAATCACGTACACTCTGGGCTC
CTCTGGAAACAATTTTGAAGATAAAGATAAAGATGAAGCTAAAGATGAAG
ATGAAACGCAGGAAGCCACGCTCGTGTTGGGCCAAGATCTTGGCAAGCTA
GGGCTTGGTGCAGTCGTTTGGGACTGTGGTGTGGGTCTTGCTGCGTTCCT
CGGCCGACACCATCATCTCGTAGCTCACAAGAAAGTTCTAGACCTCGGTA
CTGGC
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