mRNA_A-nodosum_M_contig89.36.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig89.36.2
Unique NamemRNA_A-nodosum_M_contig89.36.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: D8LBH4_ECTSI (COP9 signalosome complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH4_ECTSI)

HSP 1 Score: 479 bits (1232), Expect = 2.830e-163
Identity = 244/295 (82.71%), Postives = 265/295 (89.83%), Query Frame = 2
Query:    8 GEGDRNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMMAYSHRRAL 892
            G+   N+MLHPLTVI+ISDHHTRVS GGGAQEAGGRVIGLLFGSQNG DVSI+DAMEVACTA+G +G+ELNE L+EKQ++LY+AVYPMYEILGWYTVGTE TELDL IQRQM KFN +PLFLLMNP+PAQGSKELPVLIHESE+H LDG ++  FVQLAFQ      LETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRR L+ETK GNI+VDYPLLRQISSICNQLPTM G QFSEEFMREFNDSLSV YLA VQKSAGS+NDLADKFM A+ HRR +
Sbjct:   30 GKKGNNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGRDVSIYDAMEVACTAVGANGLELNEALVEKQKNLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSSPLFLLMNPSPAQGSKELPVLIHESESHMLDGVAQSTFVQLAFQ------LETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRFLEETKKGNISVDYPLLRQISSICNQLPTMDGAQFSEEFMREFNDSLSVAYLASVQKSAGSMNDLADKFMTAFGHRRPI 318          
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: A0A6H5KLY7_9PHAE (JAB_MPN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY7_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 6.970e-84
Identity = 132/163 (80.98%), Postives = 148/163 (90.80%), Query Frame = 2
Query:    8 GEGDRNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQAS 496
            G+   N+MLHPLTVI+ISDHHTRVS GGGAQEAGGRVIGLLFGSQNG DVSI+DAMEVACTA+G +G+ELNE L+EKQ+DLY+AVYPMYEILGWYTVGTE TELDL IQRQM KFN +PLFLLMNP+PAQGSKELPVLIHESE+H LDG ++  FVQLAFQA+
Sbjct:   30 GKKGNNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGRDVSIYDAMEVACTAVGANGLELNEALVEKQKDLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSSPLFLLMNPSPAQGSKELPVLIHESESHMLDGVAQSTFVQLAFQAT 192          
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: A0A7S2B7N9_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B7N9_9STRA)

HSP 1 Score: 258 bits (658), Expect = 2.640e-77
Identity = 134/292 (45.89%), Postives = 188/292 (64.38%), Query Frame = 2
Query:   17 DRNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVE-LNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESE-AHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMMAYSHRR 886
            +R + LHPL +I+ISDH T +  G   +  G +V+GLL+G Q GL+VSI DA E+  T LG DGV  +    +  Q+DLY+ VY  YE+LGWY+VG +A   D+ + R+M K+N++P FLLM+P+P   + +LP+ ++ES+     D    ++FV   FQ      L+T QAE+I++E +AKATPTDG++S+DLH  ++  SLRTL  R + L   L+ TK G +  DY LLRQ+SSICNQLP +   +   +F+ E+ND L V YLA V KS+ SL DL DK     SH R
Sbjct:   23 ERKIFLHPLAIITISDHFTCIESGASVKPRGSKVLGLLWGKQQGLEVSIMDAQELHYT-LGDDGVPVITAEKVNSQKDLYTEVYKNYELLGWYSVGIDADGKDMAVHREMTKYNESPFFLLMHPSPDPEASDLPISLYESKMVMGADDTPTIVFVTSEFQ------LQTMQAERITMERIAKATPTDGVASLDLHINSLGASLRTLNLRFDALLAFLKATKAGEVPTDYRLLRQVSSICNQLPAVDTAELKGDFITEYNDMLMVNYLASVTKSSASLGDLIDKHSAVVSHHR 307          
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: A0A7S2BCI8_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCI8_9STRA)

HSP 1 Score: 244 bits (624), Expect = 3.570e-72
Identity = 124/290 (42.76%), Postives = 186/290 (64.14%), Query Frame = 2
Query:   17 DRNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEG-LIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMMAYSHR 883
            +  V LHPL +I +SDH+T +  GG   + G +V+GLL+G Q GL+VSI DAME+  + L  +GV + E   +   +DLY   +   ++LGWY+VG E  E+D+ I R+M K+N++P FLLMNPNP + +K+LP+ ++ESE H ++    ++FV   FQ      L+T Q E+I     AK    +G +++DLH   VS+SL+TL +R   L + L+ TK+G +  DY LLRQ++S+CNQLP +  ++ S EF+ ++ND+L V YLA + K    LNDLA+KF M  + R
Sbjct:   30 ENKVFLHPLAIIGMSDHYTTIEAGGSLAKPGSKVLGLLWGRQQGLEVSIMDAMELGYS-LDANGVPVIEAEKVNGMKDLYLENFKDRDLLGWYSVGLEVVEMDMAIHREMTKYNESPFFLLMNPNPDEEAKDLPISLYESEMHVINDTPTMLFVTCEFQ------LQTMQMERIXXXXXAKEKAHEGEATLDLHMNTVSSSLKTLSSRASALVQYLEATKNGTVPTDYRLLRQVASVCNQLPAVDTDELSGEFVGDYNDTLMVNYLASITKGTNELNDLAEKFNMISTQR 312          
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: A0A835YT38_9STRA (JAB_MPN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT38_9STRA)

HSP 1 Score: 231 bits (590), Expect = 4.810e-67
Identity = 120/301 (39.87%), Postives = 193/301 (64.12%), Query Frame = 2
Query:    8 GEGDRNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDG-RSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQ--------FSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMMAYSHR 883
            G+G  ++ LHPL +I+ISDH+TRVS GGG      +++G+LFG ++G ++ I+DA E+    +G + + L++  + KQ +LY AVYP Y++LGWY+VG E    D+++Q+QM      P+F+L++P P + +K LPV +++SE     G  +  +FVQ +FQ      L+T QAEQI +EHVA++TP +G S+I+ HA  ++TSL  L +R+ +LRR L   + G++  D+ LLRQI+++ ++L  MG            SE   R+  D+L+VT LA +QK A +++  A KF +A+S +
Sbjct:   22 GDGQLSIHLHPLAIITISDHYTRVSTGGGVPPRDAKILGVLFGERSGAEIGIYDASEIGYDVVGGE-IVLSQASVAKQVELYEAVYPTYKVLGWYSVGLEPCPSDIKLQQQMKTHCANPIFVLLDPEPPKDAKALPVTVYQSEDQAGGGGAAATVFVQGSFQ------LQTVQAEQIGMEHVARSTPAEGSSAIERHATTMTTSLTALASRLAVLRRYLVAVRGGDVPADHKLLRQITAVTSELRAMGNASGSGGGDAALSEALARDRCDALAVTALAALQKGAAAMDAAAHKFNLAHSDK 315          
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: A0A7S2S2E8_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2E8_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.230e-66
Identity = 119/297 (40.07%), Postives = 192/297 (64.65%), Query Frame = 2
Query:    2 GKGEGDRNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMMAYSHRRAL 892
            G  E +R + LHPL ++++SDH T +  G   +  G +V+G+L+G Q GL VSI DA+E+A     +    ++   + +Q+ LY  VY  +E+LGWY+VG E T +D  IQ++  K+N++P FLL+ P P   +K+LP+ ++ES+   ++   K+ FV  +FQ      L+TTQAE+I++E V+KA+ T G+SS+DLH   +S+SLR+L +R +IL   L+   D  + VD+ LLR+I+S+CNQLP    ++    F+ +FND+L + +LA + KS+ S+++L+ KF  A+S   AL
Sbjct:   47 GDPESNRKISLHPLAIVAVSDHCTGIQTGASTKPPGSKVLGILWGKQQGLQVSITDAVELAYELDAQGMPVIDPEAVNQQKSLYMEVYKGHEMLGWYSVGEEVTPVDGLIQQEFTKYNESPFFLLVQPVPDPEAKQLPLTLYESQWTQVNEEMKMTFVPCSFQ------LDTTQAERITMEAVSKASTTAGVSSMDLHVQELSSSLRSLASRTQILVSYLKAIADQQVPVDHKLLREIASVCNQLPAADAQELQGAFLSDFNDTLLINHLALITKSSNSVSELSTKFS-AFSTTSAL 336          
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: UPI000C87477B (COP9 signalosome complex subunit 6 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C87477B)

HSP 1 Score: 228 bits (581), Expect = 4.840e-66
Identity = 119/293 (40.61%), Postives = 185/293 (63.14%), Query Frame = 2
Query:   32 LHPLTVISISDHHTRVSM------GGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISS---IDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMMAYSHR 883
            LHPL +++ISDHHTRV        GGG+  AGGRV G + G Q G  V IF++ E+ C     +   L+   +EK+ +LY  V+P + +LGWY+ G++A E D+ I R +M  N++P+++L+NP+     K+LPV I+ESE H +DG  +LIFV+      S   +ET +AE+ISV+HVA   P+DG S+   +  H   + ++++ L +R++IL + L   + G+I +D  LLRQ+SS+  +LPTM  E+F ++F+ EFND+L +TYLA     + ++N+L DKF   Y  +
Sbjct:   13 LHPLVIVNISDHHTRVKAQGLYHGGGGSGGAGGRVFGCVIGVQRGRTVEIFNSFEILCDP---ETHTLDRPFLEKKMELYKKVFPNFYVLGWYSTGSDAQESDMLIHRALMDINESPVYVLLNPSTNPTRKDLPVTIYESELHVIDGIPQLIFVR------SNYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVKILHQYLVAMERGDIPLDNSLLRQVSSLLRRLPTMESEKFQDDFLMEFNDTLLITYLAMFTNCSSTMNELVDKFNTMYDRQ 296          
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: A0A2D4BSB4_PYTIN (COP9 signalosome complex subunit 6 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSB4_PYTIN)

HSP 1 Score: 224 bits (571), Expect = 2.540e-64
Identity = 123/299 (41.14%), Postives = 191/299 (63.88%), Query Frame = 2
Query:    8 GEGDRNVMLHPLTVISISDHHTRVSMG------GGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDG-VELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGS--KELPVLIHESEAHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPT--DGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMMA 871
            G G+R+V +HPL V++I+DH+TR            A  A  +VIG LFG QNGLDV++FD+ E+    LG +G V +++  +  +   +S V+P +E+LGWYTVG++A + DL I R +M+FN++PLFLLM+P P   S  K+LP+ + ESE H LDG   +IFV+ +++      +ET++ E I V+ ++K  P      SS+  + G V  +++ L  ++E++ R L+  K G I+ D+ LLRQISS+CNQLP +   QF   F++E+ND++ V+YLA + K A + N + D+F MA
Sbjct:   24 GGGERHVQIHPLVVMNIADHYTRQKRNFQHENKKAALSALPQVIGALFGVQNGLDVAVFDSFEIKYD-LGSNGDVVIDKEFLTSRIQQFSQVFPGFELLGWYTVGSKAKQSDLTIHRSIMEFNESPLFLLMDPTPQGMSTKKKLPISLFESELHVLDGSPTMIFVKTSYK------IETSEMEGICVDRISKIAPMGDSSKSSLXPYLGNVRDAIKMLQRQVEVIVRWLEAVKKGEISADHNLLRQISSLCNQLPALSSPQFDASFLQEYNDAMLVSYLATLTKGATNANTVIDRFAMA 315          
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: F0Y0C1_AURAN (Trehalase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0C1_AURAN)

HSP 1 Score: 238 bits (608), Expect = 8.220e-64
Identity = 125/289 (43.25%), Postives = 185/289 (64.01%), Query Frame = 2
Query:    2 GKGEGDRNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMM 868
            G+    R+V LHPL ++ +SDH TRV +GG        V+GLLFG Q GLDV++FDA+E++      DG +L+   ++KQ +L++ VY   E+LGWY +   AT   L + R+ + +N++PL L+M+P P+  SK+LP+ I E+E   +D    ++F  L F       LET QAE+IS+E VAK  PTDG S++D H  AV TSLRTL +R+ +L   L+    G    D+ LLRQ+S +C+ LPT G    + + MR++ND+L V+YLA V K+A ++NDL++KFM+
Sbjct:  834 GRAATQRHVGLHPLAIVGVSDHFTRVKLGGARVAPDSPVLGLLFGKQVGLDVAVFDAIELSMA----DG-KLDHDFLKKQAELFTDVYADRELLGWYCLAKSATPAHLDLHREFLAYNESPLCLMMDPEPSAESKDLPITILEAEVQVVDDVPTMLFATLPFT------LETLQAERISMEIVAKTAPTDGESALDTHVEAVDTSLRTLGSRVAVLVDYLRAVAGGKAEPDFALLRQVSGLCDTLPTGGAPDQTRDLMRDYNDALMVSYLASVTKNANAVNDLSEKFML 1111          
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: A0A8J2WWX0_9STRA (Trehalase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWX0_9STRA)

HSP 1 Score: 229 bits (584), Expect = 5.930e-61
Identity = 115/284 (40.49%), Postives = 183/284 (64.44%), Query Frame = 2
Query:   20 RNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGE-QFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMM 868
            R V LHPL ++ +SDH TRVS+GG  Q AG  V+GLLFG Q GL+V + DA+EV  T    +  +++   +E+ + LY+ VY   +++GWY V    T   L +  + +K+N++PLFLLM+P P Q +K+LP+ ++E+E H L    K +F  + FQ      LETTQ E++++E VA+   TD    +D H  ++ TSL+TL AR+  LR  L   + G +A D+ LLR++ ++C++LP++  +  F E F+R++ND+L+  +LA   K+A ++NDL+DKF++
Sbjct:  702 RTVALHPLAIVGVSDHFTRVSVGGSRQGAGSPVVGLLFGMQRGLEVDVVDAIEVHLT----EATKVDAQFLEQSKALYTEVYEDRDLVGWYAVAPAPTANHLALHEEFVKYNESPLFLLMDPQPQQDAKDLPIQVYETEVHDL----KTVFATVPFQ------LETTQTERVAMEAVAQTGCTDRELMLDTHVASLDTSLKTLAARVRALRDYLAAVRAGTVAADHSLLRKLGALCDRLPSLKSDGAFEEAFLRDYNDALATAFLATATKNAAAVNDLSDKFVL 971          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBH4_ECTSI2.830e-16382.71COP9 signalosome complex subunit 6 n=1 Tax=Ectocar... [more]
A0A6H5KLY7_9PHAE6.970e-8480.98JAB_MPN domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2B7N9_9STRA2.640e-7745.89COP9 signalosome complex subunit 6 n=1 Tax=Dictyoc... [more]
A0A7S2BCI8_9STRA3.570e-7242.76COP9 signalosome complex subunit 6 n=1 Tax=Florenc... [more]
A0A835YT38_9STRA4.810e-6739.87JAB_MPN domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2S2E8_9STRA1.230e-6640.07COP9 signalosome complex subunit 6 n=1 Tax=Rhizoch... [more]
UPI000C87477B4.840e-6640.61COP9 signalosome complex subunit 6 n=1 Tax=Dioscor... [more]
A0A2D4BSB4_PYTIN2.540e-6441.14COP9 signalosome complex subunit 6 n=1 Tax=Pythium... [more]
F0Y0C1_AURAN8.220e-6443.25Trehalase n=1 Tax=Aureococcus anophagefferens TaxI... [more]
A0A8J2WWX0_9STRA5.930e-6140.49Trehalase n=1 Tax=Pelagomonas calceolata TaxID=356... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig89contigA-nodosum_M_contig89:293200..299642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBH4
Preferred nameCOPS6
PFAMsJAB,MitMem_reg
Model size1914
Max annot lvl2759|Eukaryota
KEGG rclassRC00049
KEGG koko:K01194,ko:K01410,ko:K12179
KEGG ReactionR00010
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000338,GO:0000715,GO:0000909,GO:0002009,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0008150,GO:0008152,GO:0008180,GO:0009056,GO:0009057,GO:0009653,GO:0009888,GO:0009987,GO:0010387,GO:0016043,GO:0016333,GO:0019538,GO:0019827,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030163,GO:0030582,GO:0030584,GO:0030718,GO:0031647,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0036099,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046483,GO:0046983,GO:0048138,GO:0048140,GO:0048232,GO:0048468,GO:0048608,GO:0048609,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050821,GO:0050896,GO:0051276,GO:0051603,GO:0051704,GO:0051716,GO:0060429,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070791,GO:0071704,GO:0071840,GO:0075259,GO:0090304,GO:0098727,GO:1901360,GO:1901564,GO:1901565,GO:1901575
Exons9
Evalue5.62e-167
EggNOG OGsCOG1310@1|root,KOG3050@2759|Eukaryota
Ec32 ortholog descriptionJAB1/MPN/MOV34 metalloenzyme domain
Ec32 orthologEc-27_003960.1
EC3.2.1.28,3.4.24.59
Descriptionprotein deneddylation
Cds size867
COG categoryV
CAZyGH37
BRITEko00000,ko00001,ko00537,ko01000,ko01002,ko03029,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig89.36.2prot_A-nodosum_M_contig89.36.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig89 293228..298426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870311.6046932-UTR-A-nodosum_M_contig89:293199..2932271680870311.6046932-UTR-A-nodosum_M_contig89:293199..293227Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig89 293200..293227 +
1680870311.7114406-UTR-A-nodosum_M_contig89:298426..2993351680870311.7114406-UTR-A-nodosum_M_contig89:298426..299335Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig89 298427..299335 +
1680870311.7278512-UTR-A-nodosum_M_contig89:299532..2996421680870311.7278512-UTR-A-nodosum_M_contig89:299532..299642Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig89 299533..299642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870311.6179717-CDS-A-nodosum_M_contig89:293227..2932391680870311.6179717-CDS-A-nodosum_M_contig89:293227..293239Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 293228..293239 +
1680870311.630657-CDS-A-nodosum_M_contig89:294201..2944121680870311.630657-CDS-A-nodosum_M_contig89:294201..294412Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 294202..294412 +
1680870311.6402695-CDS-A-nodosum_M_contig89:295923..2960121680870311.6402695-CDS-A-nodosum_M_contig89:295923..296012Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 295924..296012 +
1680870311.6501648-CDS-A-nodosum_M_contig89:296390..2965581680870311.6501648-CDS-A-nodosum_M_contig89:296390..296558Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 296391..296558 +
1680870311.660624-CDS-A-nodosum_M_contig89:296836..2969121680870311.660624-CDS-A-nodosum_M_contig89:296836..296912Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 296837..296912 +
1680870311.6715267-CDS-A-nodosum_M_contig89:297271..2973641680870311.6715267-CDS-A-nodosum_M_contig89:297271..297364Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 297272..297364 +
1680870311.6813822-CDS-A-nodosum_M_contig89:297761..2978621680870311.6813822-CDS-A-nodosum_M_contig89:297761..297862Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 297762..297862 +
1680870311.691279-CDS-A-nodosum_M_contig89:298309..2984261680870311.691279-CDS-A-nodosum_M_contig89:298309..298426Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 298310..298426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig89.36.2

>prot_A-nodosum_M_contig89.36.2 ID=prot_A-nodosum_M_contig89.36.2|Name=mRNA_A-nodosum_M_contig89.36.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=289bp
MLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAME
VACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLR
IQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQ
LAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTL
LARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMR
EFNDSLSVTYLACVQKSAGSLNDLADKFMMAYSHRRAL*
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mRNA from alignment at A-nodosum_M_contig89:293200..299642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig89.36.2 ID=mRNA_A-nodosum_M_contig89.36.2|Name=mRNA_A-nodosum_M_contig89.36.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6443bp|location=Sequence derived from alignment at A-nodosum_M_contig89:293200..299642+ (Ascophyllum nodosum dioecious)
GGGGAAGGGTGAAGGAGACCGCAACGTGATGCTCCATCCGGTGTGTCCCG CACCTCCTTTTTCAATCAATATTTCACGTCGTAGGACTTCCATGAGCTAG GATGCGGAAGTCAGTAGGATTGGTTCAACTTCCTGTCGAATGTTGGTGGA GCGAAGATCCCCGTAATATTTTTAGCGTAATGTATGTTACCCATTAATTG CGGCGTCCGCACAAAAGCCGTGTACAGATGTATCTTTTTCAACTCCCTGG TACTTCGTCCCGTATGTAGAAGTATTTATGTATGTGTATGTATGTATATT TATCAAATTGCACATAACCGCGCAATCCGGCCCTGTCATCCTAGTCATTC TACTGGTCATTCTATGCCACTCGCATTAATCCTCCCAGTATGTATgtaca GTATATTTATTAAATTGCACATAACCGCGCAATCCGGCCCTGTCATCTTA GTCATCCTGTGCCACTCGCATTGATCCTCCCAAGGGGTGTATGTACGTAC GTATAATCCTTGTCCTCTGGGATTCCTGAGCATGGCCTTTTCTACTACTG AAAATAAAATAAATAAAAATAAACTGTAAAATTCGACTTCACGGTCGACG AGGGAAAGGAATGGCTGAATTCTTCTCGCGAGAAAAACTAAGGCACGCAC CGCAGAAAGAAGGTGGATGAGAAATCCTGTGTGACCTTCCTCCTGTGTGA CCCCGGCTGGTACGTCCATTGATGTCCAGAATGAATGGGAAGTAAACACA AACTCTAGCTCTAGAGTCGAAACATTTTTTTCCCCATTTGATTTCATACT ATTTGCACTACTGTTGAAAGAAAAATCTGAACGCATCGAGACCTCTGAGC ATCCCCCAGTCAGGGGGAAAAATGTCAAAACGTTTAGGTGGGATCATAGG CTCCAAATACAAAACTTCTTCATGGCATATAAACGGGTTCCCCGATGGTA TTAACATTGGGCCTGTTGCTGTTGCTTGTTCCGTTGTCCTGCAATCGAAA AGCTGACAGTTATCTCGATATCAGACCACCACACTAGAGTGTCAATGGGA GGTGGGGCTCAAGAGGCAGGGGGGCGAGTCATCGGTCTCCTGTTCGGCTC TCAGAACGGGCTCGACGTGAGCATATTCGACGCGATGGAGGTGGCATGCA CCGCATTGGGAAAGGACGGCGTGGAGCTGAACGAGGGTCTGATCGAGAAG CAAAGAGATCTCTGTGAGTTACCACAACACATCTGTGCCGGTTCTTCGAC CATCTACTGTACTGTACCGTTTCCGATATTTTCTTTATCCCACATGTCCA CACCAGATTCAGCCTGAGTGTGGAAAATGAGCAAGCTGACGCGGGACGGG ACTGCCGAACCTGTCTCGCGAGACCAAATTCTTAGGCGCGAACGGGGACA GAGTTTTTTTTATTTTCCCTATTCAGGTTCAGCTGACCACGAGCAGGATT GGCTACATTACCCGATTGATCCATAGTATGCTATATGTGATGAATATACA TACACACATACCAAAAGTGGGTGTGTGGGTTAAAGGAGGCGCACAAAAAT CGATCCACGGATACCTGAAAAGGCAGCACCCATCTGGAACTACTTTGAGG ACTACATGCCCTGCGCCGGCGGCCTCTCGGCTTTGAACGCCATGGATAGG GTGCATACACTTTTGCGTGGCCTGATAAACTCTAATAGGGGCTAACACAA TGGCGGCGGAGGGTACAAATAAATGGACTCCGTCGCGGAAAACGGAAGAA ATCCCGTGAGAAAGCACCAGATTCAGCCTGAGTGTGGAGAATGAGAAGGC TGACGCGGGACGTCCCAACCTGTCTCGCGAGGCAAAAATTCTCAGGCGCG AACGGGGATGGGGAAAAATTAATTTTTCCGGTTCAGCTGACCACGATCAG GATTGACAACCTAACCCGGTTGATCTATTACTGTCTTTTAAGCATACATA TTGTCGCCCGAGTGTTCTAGTAGGTAACCTGCACACCTACTGGTGCGGAA GTCGTGAGTTCGATTCTTGTCAAAGCGGGATTTGTATTATTTCTTCCGTA ACGGAAAGCGTGAGTACGTGAGTGAATAAACCATTGGTTGACGTGTTGTA AGAATGCTTAACTTGTATCGCGATAGAAATTCGTATCAGGTAGGCGTGAA CCGGAGAAAGATGGGAAGGTCCCTAGTGACCACAGGCAGAATGGTAATGA TGAGGTCCATCGGCTATAAGTGAGATGAAAAAAAGACAAAAAATAATAAA TACATATACTGTACATTGAGAAGCGATGCTACACTTGAAATATATCCTCA ACGAAACATAAAAGCTCAGGCCAGTCGATCCGAGCCGTAGGACCTCAATA CATACTTAGCATTAAATGAACTTGAATACGTACATGAGGCCGGACGATGG TAACCATAGGGCTCCGCTAGAAAAAAATCATGTTTTATCTAACGGAAGCA CTGTCGCGGCATGACCGAAAGCCGCTCAGCTAATAAAGCACGGCCAAAGA ATCGAGCTTGACGGATGACTGCTGTGGAACAGCCAAAGCCCTCCTCGCAG GAAGTATGCATCCTTTCACTCTTCGGTACCATCGCAAGTTCTCTCGTTGT GCGGCATCAACGCCGTCAACGATGTCATCATACAGCCATCGCTTCCGCTT CGTTCTGTTTCCGTCAACGTGGTACGATTGAAGCTCTTATTTTCGCTTTA CTTGTTTCATCTTTCTATCCATAGACTCTGCGGTTTACCCTATGTATGAG ATTCTGGGATGGTACACGGTCGGCACGGAGGCCACGGAGCTCGATCTGCG CATTCAACGACAGGTGCACGCCGCTAGAGTAGTCGTAGTACTGTACATCT GGTGTTCGCGTTCCATGTGTGGAGCATCGTGGGCGTTCGTTTGTAGATCG TCGTTTGATGCTGTACGTGGTAGCTTTCCCCATTTTCGCATTCGCCGGTA GGAACTCGCATCAGGTGAACCGGGGTTCTGTGGATGAATATCAACTGATA CCGCGTGCAGCTGTAGTATAGAATATTATGAGCTGGGGTGACGACGCTGG TTGGAAACTGTCGTTACAACTTCCACGTTCACCATCAGTCATTCGCGGTG TTTTTTCGTGAGGAACTCTCGAAATCATCTTGAGCTGAACTCGTCACGCA CTTGTCATCCGCCTTCCTCTCCTATACTATCCATGTGGCAGATGATGAAA TTCAACCAGGCCCCGCTGTTCCTACTAATGAATCCTAACCCGGCGCAAGG CTCCAAAGAGCTTCCCGTATTGATCCATGAGTCGGAAGCGCACACGCTGG ACGGGAGGTCCAAGCTAATTTTCGTTCAGCTGGCATTCCAGGCGAGTTCA CTGCTGTTAGTAGCTCAACGGTTTGCTCGCTGGAAATGTCGTTGTGCCAA CTTGGAAGTACGGCCTGGGGTTATGTTTCGCCATCATGGTAGCGCTATCT AAACTATCTAAACATGTTATTAAAAGCCAACAGTTCATACGATTCTCACA GTAAATAATGCAGTTCATGAACAACGGGGGAAATCTACCATTCGGTACAA ACAGTACGTCATATTTTTTAGTGGCGCGCGCAATCGCATATAATGGTGAT CCCTTCGGTACCTGCTGTTAACAACTGTACGCTTTAGCTCGAGACCACGC AAGCGGAGCAAATATCAGTGGAGCACGTTGCCAAGGCTACCCCAACAGAT GGGATATCATCAAGTGAGCTTAACCCGTGCACCACCAACTTCGGAAACCA TGTTGGACTATTGCACTTCAGGAGTAAAGCGTATTGCGACCTTTTTTCTT TATGTGGTGACTCACTCACAGTCGACATGGAAGGAGGCATGTTCTAGATT ACCCTTTACAGTTTGTTGCGAGGCCATCGCCGTCGCACTGCAAAAGAATA CGCCCCTCGACTGAAAACCTATTTTGACTATAGTGCTTGTAGTGTTTGCT CACGTCATACAATATTATGTAGCTCCTTCCTCAATGCAATGACAGGCGAA AAACATGCGCTCTTTCGTTTCACGTGAGGGAAGGTATGACGTTGTAACCC TCCCCCTTTAAATGCTCTCCAGTTGACCTGCACGCAGGCGCGGTGAGCAC GTCCCTGCGGACCCTTCTTGCCCGGATCGAGATACTAAGGAGATTGCTCC AGGAAACAAAGGACGGTGAGATCTTGTACTTTTAATGATAGCATTCATGA CCTGGTTGTATCCGTGTCGGTTTAGTAAACGGAAAACGGAATTGCCCATC TATACCATACTGCCTTTTTACTGGGGAAAATCAAATGCTGCCCTTGAAAG TCGTCTTTTCTTTTTCAATGATGACTACCCAGTATGCGCGACTTAATACG GTTTGACCAGGTAGTATTTATTGCGCAGTTTTCGAAGTTGGCCGTTCATA CTACGGTGCCGCTTGGACGAGCAACACGTGCCCCTGGATACCGATATTGA AAACATCAAGTTCGTGGAATGAGGCCCCACCGTCGCCCATTGCTTTGGTG ATTGGTGCTGAGCGGAATGGACTTTTGGAACTCCCTTGATTTATTTGCGC CTGTACTGCCAGGAAACATTGCGGTAGATTACCCGCTGTTGCGGCAAATT TCAAGCATTTGTAACCAGCTTCCAACCATGGGCGGCGAGCAGTTCTCGGA GGAATTCATGCGGGTGAGTCCACCTTTTTTCATTGTGTAAGGATTCGACC GAACAGTGCTCGTGAAGAAACGGGACCACAGGTAGATCTATTGCCCACCC GTACCAAAGAAATCGCAACTGTAAACGACGAGAGACTTAGAACACTCGTG TTTGAAGTGCGCACTTTCTTGAGAATGGGTATATTATTTATAGTTAAAAA CCTAGAGAAAGCTATAGAAGTCTAGGGATAGCGTCATGACCTACAAAGCC CGATGTTGACTCCCGCACTTGTGGCTGAACTTTCTCGCCTCCCTTACAGT ACAGCACGAGCTAGCTGCCTACACAGCCTGAAAAGTCTTAGCGACACCTA CAACGGTATCAAGTAGGTACCAGAAGAATCTACAGTAAGTAGCACGAATG ATCGCAGCTGCATCTCGTTTTTGATGAGGCTTGCCGTTTGTTCTCTCGCT ACCTGCCCAGGAATTCAACGATTCTCTGTCAGTGACCTACCTCGCGTGCG TGCAGAAGAGTGCCGGTTCGCTCAACGACCTCGCTGACAAGTTCATGATG GCCTACAGCCACCGACGAGCACTTTGATGGATGAGGTACAGTATAGTTTT TGTGTCCGGAGTGTGGGTAGAGTACAAACTTAGTTCGCGCGAAGTCGACC AGGAGGTACTTGACACTGAGTGTGGGCCATCCTGCTTCGGGGATGGACCA TCTGACATTTGTCACATATTGCCAGGGCCTACTTGTACAGTTTCTCCTTC CCAACGACTGAAAAGCGGGGTGATTGGTGGGGGTATATGTGCAGTATTTT AGCTAGCATCGCCCGTTGCATAGACAACTCTGTGTTGTGATCCATTTTGA CATTACTGGCTCAGCGACGAGGTGGTGCCGCATCTTATACATGTAACAGT ATGAGTTTGTGAGAAGGGTCACCCTGCCTTGGCAACAAACACGTTCGTAT TCTGCATGGCATATGCACCGATCTCAGCATCGTACGCGCACGAGTATGAG CGCGGCAGTTAACTTTCCCGAGCGGTGGACGCTATTTCGGCAACCTATAG TATAGCGACGCACAACGCAAGTGCTATTCATAGTTTCTACTTGGGAGACT TGAAGGTCCAGGGTGTCGTACCAGCCCAGGGGCATCAGAAGGTCGCCCAA GCGGGCATTTTCGTCTCGAACACCCAGTCAGACCCCTGTCAAGACATGCA AAGGAGCGGGGCAGGATTGATCGGATTGATGGATTGATCGGATGGGAGTG CGGGAAGCGGTGATTCCTACGAGATGTGCCGCGGGGGAAATGGCGACGCG TCTTCAATTTTGGATGAGTTCCTGAAAAGAATCTACAAGTACTTGTACTG TTGCAGCCCCGTCACGCTTTGATGCCCATGAAAAGGTACTAGCCTCGTAT CGAAGGGCATGAAGCCATATCCCAACACAGTGGAGCTGGTTCTCCGTGAA GCGTTCCCCGCCTTGGCATACGCTACAGGTCCGGATCTGAGGAGGGAAAA CATGGGAGAGTGGGTGGCCCTCGAGTCAACGCAGAGACTCTCTTTCTACG CGTGCAGACATGGAATGCCTGGTTCGCACCAGAACACTTCAGTATTAGTG CGCAGTTATCAACTACCAGTATTTAATAGACGTGTCATGCAGTAAGCACG AGTCCTTATTTGAGAAATCACGCAATACCTGACCTGACCCAGTGCACACA AGTCAGAACCCACCACAAACGCCTCCTCGTCTTGTTCATCGCGATTCGCC GTAACATCCCCTCCAAGCGTGCTGCCTTCCTCTGACCCCGGCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig89:293200..299642+

>mRNA_A-nodosum_M_contig89.36.2 ID=mRNA_A-nodosum_M_contig89.36.2|Name=mRNA_A-nodosum_M_contig89.36.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=867bp|location=Sequence derived from alignment at A-nodosum_M_contig89:293200..299642+ (Ascophyllum nodosum dioecious)
ATGCTCCATCCGCTGACAGTTATCTCGATATCAGACCACCACACTAGAGT
GTCAATGGGAGGTGGGGCTCAAGAGGCAGGGGGGCGAGTCATCGGTCTCC
TGTTCGGCTCTCAGAACGGGCTCGACGTGAGCATATTCGACGCGATGGAG
GTGGCATGCACCGCATTGGGAAAGGACGGCGTGGAGCTGAACGAGGGTCT
GATCGAGAAGCAAAGAGATCTCTACTCTGCGGTTTACCCTATGTATGAGA
TTCTGGGATGGTACACGGTCGGCACGGAGGCCACGGAGCTCGATCTGCGC
ATTCAACGACAGATGATGAAATTCAACCAGGCCCCGCTGTTCCTACTAAT
GAATCCTAACCCGGCGCAAGGCTCCAAAGAGCTTCCCGTATTGATCCATG
AGTCGGAAGCGCACACGCTGGACGGGAGGTCCAAGCTAATTTTCGTTCAG
CTGGCATTCCAGGCGAGTTCACTGCTGTTACTCGAGACCACGCAAGCGGA
GCAAATATCAGTGGAGCACGTTGCCAAGGCTACCCCAACAGATGGGATAT
CATCAATTGACCTGCACGCAGGCGCGGTGAGCACGTCCCTGCGGACCCTT
CTTGCCCGGATCGAGATACTAAGGAGATTGCTCCAGGAAACAAAGGACGG
AAACATTGCGGTAGATTACCCGCTGTTGCGGCAAATTTCAAGCATTTGTA
ACCAGCTTCCAACCATGGGCGGCGAGCAGTTCTCGGAGGAATTCATGCGG
GAATTCAACGATTCTCTGTCAGTGACCTACCTCGCGTGCGTGCAGAAGAG
TGCCGGTTCGCTCAACGACCTCGCTGACAAGTTCATGATGGCCTACAGCC
ACCGACGAGCACTTTGA
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