mRNA_A-nodosum_M_contig89.36.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: D8LBH4_ECTSI (COP9 signalosome complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH4_ECTSI) HSP 1 Score: 479 bits (1232), Expect = 2.830e-163 Identity = 244/295 (82.71%), Postives = 265/295 (89.83%), Query Frame = 2
Query: 8 GEGDRNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMMAYSHRRAL 892
G+ N+MLHPLTVI+ISDHHTRVS GGGAQEAGGRVIGLLFGSQNG DVSI+DAMEVACTA+G +G+ELNE L+EKQ++LY+AVYPMYEILGWYTVGTE TELDL IQRQM KFN +PLFLLMNP+PAQGSKELPVLIHESE+H LDG ++ FVQLAFQ LETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRR L+ETK GNI+VDYPLLRQISSICNQLPTM G QFSEEFMREFNDSLSV YLA VQKSAGS+NDLADKFM A+ HRR +
Sbjct: 30 GKKGNNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGRDVSIYDAMEVACTAVGANGLELNEALVEKQKNLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSSPLFLLMNPSPAQGSKELPVLIHESESHMLDGVAQSTFVQLAFQ------LETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRFLEETKKGNISVDYPLLRQISSICNQLPTMDGAQFSEEFMREFNDSLSVAYLASVQKSAGSMNDLADKFMTAFGHRRPI 318
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: A0A6H5KLY7_9PHAE (JAB_MPN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY7_9PHAE) HSP 1 Score: 270 bits (691), Expect = 6.970e-84 Identity = 132/163 (80.98%), Postives = 148/163 (90.80%), Query Frame = 2
Query: 8 GEGDRNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQAS 496
G+ N+MLHPLTVI+ISDHHTRVS GGGAQEAGGRVIGLLFGSQNG DVSI+DAMEVACTA+G +G+ELNE L+EKQ+DLY+AVYPMYEILGWYTVGTE TELDL IQRQM KFN +PLFLLMNP+PAQGSKELPVLIHESE+H LDG ++ FVQLAFQA+
Sbjct: 30 GKKGNNIMLHPLTVITISDHHTRVSTGGGAQEAGGRVIGLLFGSQNGRDVSIYDAMEVACTAVGANGLELNEALVEKQKDLYTAVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSSPLFLLMNPSPAQGSKELPVLIHESESHMLDGVAQSTFVQLAFQAT 192
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: A0A7S2B7N9_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B7N9_9STRA) HSP 1 Score: 258 bits (658), Expect = 2.640e-77 Identity = 134/292 (45.89%), Postives = 188/292 (64.38%), Query Frame = 2
Query: 17 DRNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVE-LNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESE-AHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMMAYSHRR 886
+R + LHPL +I+ISDH T + G + G +V+GLL+G Q GL+VSI DA E+ T LG DGV + + Q+DLY+ VY YE+LGWY+VG +A D+ + R+M K+N++P FLLM+P+P + +LP+ ++ES+ D ++FV FQ L+T QAE+I++E +AKATPTDG++S+DLH ++ SLRTL R + L L+ TK G + DY LLRQ+SSICNQLP + + +F+ E+ND L V YLA V KS+ SL DL DK SH R
Sbjct: 23 ERKIFLHPLAIITISDHFTCIESGASVKPRGSKVLGLLWGKQQGLEVSIMDAQELHYT-LGDDGVPVITAEKVNSQKDLYTEVYKNYELLGWYSVGIDADGKDMAVHREMTKYNESPFFLLMHPSPDPEASDLPISLYESKMVMGADDTPTIVFVTSEFQ------LQTMQAERITMERIAKATPTDGVASLDLHINSLGASLRTLNLRFDALLAFLKATKAGEVPTDYRLLRQVSSICNQLPAVDTAELKGDFITEYNDMLMVNYLASVTKSSASLGDLIDKHSAVVSHHR 307
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: A0A7S2BCI8_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCI8_9STRA) HSP 1 Score: 244 bits (624), Expect = 3.570e-72 Identity = 124/290 (42.76%), Postives = 186/290 (64.14%), Query Frame = 2
Query: 17 DRNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEG-LIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMMAYSHR 883
+ V LHPL +I +SDH+T + GG + G +V+GLL+G Q GL+VSI DAME+ + L +GV + E + +DLY + ++LGWY+VG E E+D+ I R+M K+N++P FLLMNPNP + +K+LP+ ++ESE H ++ ++FV FQ L+T Q E+I AK +G +++DLH VS+SL+TL +R L + L+ TK+G + DY LLRQ++S+CNQLP + ++ S EF+ ++ND+L V YLA + K LNDLA+KF M + R
Sbjct: 30 ENKVFLHPLAIIGMSDHYTTIEAGGSLAKPGSKVLGLLWGRQQGLEVSIMDAMELGYS-LDANGVPVIEAEKVNGMKDLYLENFKDRDLLGWYSVGLEVVEMDMAIHREMTKYNESPFFLLMNPNPDEEAKDLPISLYESEMHVINDTPTMLFVTCEFQ------LQTMQMERIXXXXXAKEKAHEGEATLDLHMNTVSSSLKTLSSRASALVQYLEATKNGTVPTDYRLLRQVASVCNQLPAVDTDELSGEFVGDYNDTLMVNYLASITKGTNELNDLAEKFNMISTQR 312
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: A0A835YT38_9STRA (JAB_MPN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT38_9STRA) HSP 1 Score: 231 bits (590), Expect = 4.810e-67 Identity = 120/301 (39.87%), Postives = 193/301 (64.12%), Query Frame = 2
Query: 8 GEGDRNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDG-RSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQ--------FSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMMAYSHR 883
G+G ++ LHPL +I+ISDH+TRVS GGG +++G+LFG ++G ++ I+DA E+ +G + + L++ + KQ +LY AVYP Y++LGWY+VG E D+++Q+QM P+F+L++P P + +K LPV +++SE G + +FVQ +FQ L+T QAEQI +EHVA++TP +G S+I+ HA ++TSL L +R+ +LRR L + G++ D+ LLRQI+++ ++L MG SE R+ D+L+VT LA +QK A +++ A KF +A+S +
Sbjct: 22 GDGQLSIHLHPLAIITISDHYTRVSTGGGVPPRDAKILGVLFGERSGAEIGIYDASEIGYDVVGGE-IVLSQASVAKQVELYEAVYPTYKVLGWYSVGLEPCPSDIKLQQQMKTHCANPIFVLLDPEPPKDAKALPVTVYQSEDQAGGGGAAATVFVQGSFQ------LQTVQAEQIGMEHVARSTPAEGSSAIERHATTMTTSLTALASRLAVLRRYLVAVRGGDVPADHKLLRQITAVTSELRAMGNASGSGGGDAALSEALARDRCDALAVTALAALQKGAAAMDAAAHKFNLAHSDK 315
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: A0A7S2S2E8_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2E8_9STRA) HSP 1 Score: 231 bits (588), Expect = 1.230e-66 Identity = 119/297 (40.07%), Postives = 192/297 (64.65%), Query Frame = 2
Query: 2 GKGEGDRNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMMAYSHRRAL 892
G E +R + LHPL ++++SDH T + G + G +V+G+L+G Q GL VSI DA+E+A + ++ + +Q+ LY VY +E+LGWY+VG E T +D IQ++ K+N++P FLL+ P P +K+LP+ ++ES+ ++ K+ FV +FQ L+TTQAE+I++E V+KA+ T G+SS+DLH +S+SLR+L +R +IL L+ D + VD+ LLR+I+S+CNQLP ++ F+ +FND+L + +LA + KS+ S+++L+ KF A+S AL
Sbjct: 47 GDPESNRKISLHPLAIVAVSDHCTGIQTGASTKPPGSKVLGILWGKQQGLQVSITDAVELAYELDAQGMPVIDPEAVNQQKSLYMEVYKGHEMLGWYSVGEEVTPVDGLIQQEFTKYNESPFFLLVQPVPDPEAKQLPLTLYESQWTQVNEEMKMTFVPCSFQ------LDTTQAERITMEAVSKASTTAGVSSMDLHVQELSSSLRSLASRTQILVSYLKAIADQQVPVDHKLLREIASVCNQLPAADAQELQGAFLSDFNDTLLINHLALITKSSNSVSELSTKFS-AFSTTSAL 336
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: UPI000C87477B (COP9 signalosome complex subunit 6 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C87477B) HSP 1 Score: 228 bits (581), Expect = 4.840e-66 Identity = 119/293 (40.61%), Postives = 185/293 (63.14%), Query Frame = 2
Query: 32 LHPLTVISISDHHTRVSM------GGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISS---IDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMMAYSHR 883
LHPL +++ISDHHTRV GGG+ AGGRV G + G Q G V IF++ E+ C + L+ +EK+ +LY V+P + +LGWY+ G++A E D+ I R +M N++P+++L+NP+ K+LPV I+ESE H +DG +LIFV+ S +ET +AE+ISV+HVA P+DG S+ + H + ++++ L +R++IL + L + G+I +D LLRQ+SS+ +LPTM E+F ++F+ EFND+L +TYLA + ++N+L DKF Y +
Sbjct: 13 LHPLVIVNISDHHTRVKAQGLYHGGGGSGGAGGRVFGCVIGVQRGRTVEIFNSFEILCDP---ETHTLDRPFLEKKMELYKKVFPNFYVLGWYSTGSDAQESDMLIHRALMDINESPVYVLLNPSTNPTRKDLPVTIYESELHVIDGIPQLIFVR------SNYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVKILHQYLVAMERGDIPLDNSLLRQVSSLLRRLPTMESEKFQDDFLMEFNDTLLITYLAMFTNCSSTMNELVDKFNTMYDRQ 296
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: A0A2D4BSB4_PYTIN (COP9 signalosome complex subunit 6 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSB4_PYTIN) HSP 1 Score: 224 bits (571), Expect = 2.540e-64 Identity = 123/299 (41.14%), Postives = 191/299 (63.88%), Query Frame = 2
Query: 8 GEGDRNVMLHPLTVISISDHHTRVSMG------GGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDG-VELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGS--KELPVLIHESEAHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPT--DGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMMA 871
G G+R+V +HPL V++I+DH+TR A A +VIG LFG QNGLDV++FD+ E+ LG +G V +++ + + +S V+P +E+LGWYTVG++A + DL I R +M+FN++PLFLLM+P P S K+LP+ + ESE H LDG +IFV+ +++ +ET++ E I V+ ++K P SS+ + G V +++ L ++E++ R L+ K G I+ D+ LLRQISS+CNQLP + QF F++E+ND++ V+YLA + K A + N + D+F MA
Sbjct: 24 GGGERHVQIHPLVVMNIADHYTRQKRNFQHENKKAALSALPQVIGALFGVQNGLDVAVFDSFEIKYD-LGSNGDVVIDKEFLTSRIQQFSQVFPGFELLGWYTVGSKAKQSDLTIHRSIMEFNESPLFLLMDPTPQGMSTKKKLPISLFESELHVLDGSPTMIFVKTSYK------IETSEMEGICVDRISKIAPMGDSSKSSLXPYLGNVRDAIKMLQRQVEVIVRWLEAVKKGEISADHNLLRQISSLCNQLPALSSPQFDASFLQEYNDAMLVSYLATLTKGATNANTVIDRFAMA 315
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: F0Y0C1_AURAN (Trehalase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0C1_AURAN) HSP 1 Score: 238 bits (608), Expect = 8.220e-64 Identity = 125/289 (43.25%), Postives = 185/289 (64.01%), Query Frame = 2
Query: 2 GKGEGDRNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGEQFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMM 868
G+ R+V LHPL ++ +SDH TRV +GG V+GLLFG Q GLDV++FDA+E++ DG +L+ ++KQ +L++ VY E+LGWY + AT L + R+ + +N++PL L+M+P P+ SK+LP+ I E+E +D ++F L F LET QAE+IS+E VAK PTDG S++D H AV TSLRTL +R+ +L L+ G D+ LLRQ+S +C+ LPT G + + MR++ND+L V+YLA V K+A ++NDL++KFM+
Sbjct: 834 GRAATQRHVGLHPLAIVGVSDHFTRVKLGGARVAPDSPVLGLLFGKQVGLDVAVFDAIELSMA----DG-KLDHDFLKKQAELFTDVYADRELLGWYCLAKSATPAHLDLHREFLAYNESPLCLMMDPEPSAESKDLPITILEAEVQVVDDVPTMLFATLPFT------LETLQAERISMEIVAKTAPTDGESALDTHVEAVDTSLRTLGSRVAVLVDYLRAVAGGKAEPDFALLRQVSGLCDTLPTGGAPDQTRDLMRDYNDALMVSYLASVTKNANAVNDLSEKFML 1111
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Match: A0A8J2WWX0_9STRA (Trehalase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWX0_9STRA) HSP 1 Score: 229 bits (584), Expect = 5.930e-61 Identity = 115/284 (40.49%), Postives = 183/284 (64.44%), Query Frame = 2
Query: 20 RNVMLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEVACTALGKDGVELNEGLIEKQRDLYSAVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQASSLLLLETTQAEQISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNIAVDYPLLRQISSICNQLPTMGGE-QFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADKFMM 868
R V LHPL ++ +SDH TRVS+GG Q AG V+GLLFG Q GL+V + DA+EV T + +++ +E+ + LY+ VY +++GWY V T L + + +K+N++PLFLLM+P P Q +K+LP+ ++E+E H L K +F + FQ LETTQ E++++E VA+ TD +D H ++ TSL+TL AR+ LR L + G +A D+ LLR++ ++C++LP++ + F E F+R++ND+L+ +LA K+A ++NDL+DKF++
Sbjct: 702 RTVALHPLAIVGVSDHFTRVSVGGSRQGAGSPVVGLLFGMQRGLEVDVVDAIEVHLT----EATKVDAQFLEQSKALYTEVYEDRDLVGWYAVAPAPTANHLALHEEFVKYNESPLFLLMDPQPQQDAKDLPIQVYETEVHDL----KTVFATVPFQ------LETTQTERVAMEAVAQTGCTDRELMLDTHVASLDTSLKTLAARVRALRDYLAAVRAGTVAADHSLLRKLGALCDRLPSLKSDGAFEEAFLRDYNDALATAFLATATKNAAAVNDLSDKFVL 971 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig89.36.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig89.36.2 >prot_A-nodosum_M_contig89.36.2 ID=prot_A-nodosum_M_contig89.36.2|Name=mRNA_A-nodosum_M_contig89.36.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=289bp MLHPLTVISISDHHTRVSMGGGAQEAGGRVIGLLFGSQNGLDVSIFDAMEback to top mRNA from alignment at A-nodosum_M_contig89:293200..299642+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig89.36.2 ID=mRNA_A-nodosum_M_contig89.36.2|Name=mRNA_A-nodosum_M_contig89.36.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6443bp|location=Sequence derived from alignment at A-nodosum_M_contig89:293200..299642+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig89:293200..299642+ >mRNA_A-nodosum_M_contig89.36.2 ID=mRNA_A-nodosum_M_contig89.36.2|Name=mRNA_A-nodosum_M_contig89.36.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=867bp|location=Sequence derived from alignment at A-nodosum_M_contig89:293200..299642+ (Ascophyllum nodosum dioecious)back to top |