mRNA_A-nodosum_M_contig89.22.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig89.22.1
Unique NamemRNA_A-nodosum_M_contig89.22.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig89.22.1 vs. uniprot
Match: D7FJS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS3_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.950e-10
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 3 
Query:   42 RLSVYAQEICAIQQQLSDEPQQGGETAPPPYGQRTRVTPERLALVIREQCKNFYQ 206
            + S  A+EI A+Q QLS+EP QGGE A  PYGQR RVTP RLA VIREQ K F Q
Sbjct:  244 KTSRQAEEIHAMQVQLSEEPLQGGE-ATAPYGQRARVTPGRLAFVIREQMKTFNQ 297
[Close]
BLAST of mRNA_A-nodosum_M_contig89.22.1 vs. uniprot
Match: A0A6H5KNK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK5_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.110e-9
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 3 
Query:   75 IQQQLSDEPQQGGETAPPPYGQRTRVTPERLALVIREQCKNFYQ 206
            +Q QLS+EP QGGE AP PYGQR RVTP RLA VIREQ K F Q
Sbjct:    1 MQVQLSEEPLQGGE-APAPYGQRARVTPGRLAFVIREQMKTFNQ 43
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig89.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJS3_ECTSI2.950e-1065.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNK5_9PHAE5.110e-972.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig89contigA-nodosum_M_contig89:164651..165757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size208
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870310.0704007-CDS-A-nodosum_M_contig89:164650..1647941680870310.0704007-CDS-A-nodosum_M_contig89:164650..164794Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 164651..164794 -
1680870310.0818453-CDS-A-nodosum_M_contig89:165695..1657461680870310.0818453-CDS-A-nodosum_M_contig89:165695..165746Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 165696..165746 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870310.0921926-UTR-A-nodosum_M_contig89:165746..1657571680870310.0921926-UTR-A-nodosum_M_contig89:165746..165757Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig89 165747..165757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig89.22.1prot_A-nodosum_M_contig89.22.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig89 164651..165746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig89.22.1

>prot_A-nodosum_M_contig89.22.1 ID=prot_A-nodosum_M_contig89.22.1|Name=mRNA_A-nodosum_M_contig89.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=65bp
MWEMVESFEKRLSVYAQEICAIQQQLSDEPQQGGETAPPPYGQRTRVTPE
RLALVIREQCKNFYQ
back to top

mRNA from alignment at A-nodosum_M_contig89:164651..165757-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig89.22.1 ID=mRNA_A-nodosum_M_contig89.22.1|Name=mRNA_A-nodosum_M_contig89.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1107bp|location=Sequence derived from alignment at A-nodosum_M_contig89:164651..165757- (Ascophyllum nodosum dioecious)
CGAGCGACTACATGTGGGAGATGGTGGAGAGCTTCGAGAAGCGACTGAGC
GTTTATGCGCAGGCAAGCTGATAAATATATATATCTGTTCATTTTACACC
TATGGGTTTTGATTGTTCGATTCCTTCTATATACTATTCCGTGTGTTTTT
TCGGAGAGTGGGGACGTCGCCGGACCAGTGTGATGGCCATCCAACAGGTA
ATCAAGGGCAAACGCCATTAAGGTCTATAATTAAACCTCCGACCTATTAA
TAGAGTAAGTCAGAGCGCTGACTTGGCATTTAGCTCAGCGCTTGAATCAT
AATTTTAGCAAAAGCTAGACCGGGGGCCTTAATAGCCCCCGATGTCACCC
CAATGTTGCACAGCCCTCTTACCAGAATTGGTCAACTAGTTATGTCGAAC
TGACTATTTAGCTTGGTGGTTCAAGTTATATAACCAACCAAAGCTAGGCT
TGGGTTCGATCCCCGGTATCGTGTTCCTGTCTCTAGTGTCGGAAAGAAAT
GAATTTATAAATTTTCGAGAGCGACGTTGTGATGCCCATATGGATTGTGG
TTCGCTGGAGACAAAATTTCCGGAACAGTATGAGGCAGACGGTTGTTAGC
GCAGTCAAAAGTATGTAAGCGAGCCCGGATTGATATCGGGGGCTATCGAG
CCCCCCGGTCTAGCTTTTGTTGAGGTGCTAATATTATACCACTGAGCTAA
ACCCTCGTCAGCGCTGACTTGGCGTTTCGCTCAGTGGTTGAATTAACGTG
CTTTCCGACCTACCAGTATTTTCTATCTTGGCTAACGAGGAGTGTAGAGT
GTAGAGTCGGGGAGGGAAGACACTACATCCCCGGGTGCAGTTGCGTGCAT
CCTGAAACCACGGTAGACGTACGACACCCATTCCTCCTCCTGGAACAATT
ACCATTCCCTCTTGGTGTTGTGATGCCGTCATGCCGTTCATCTGTGCCAT
CCACCTCGCGCAGGAAATATGCGCGATACAACAGCAGCTCTCGGACGAGC
CGCAGCAGGGAGGGGAAACGGCGCCGCCACCGTACGGGCAGCGAACGCGC
GTCACGCCCGAACGCTTGGCCTTGGTTATACGCGAGCAGTGTAAGAATTT
TTATCAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig89:164651..165757-

>mRNA_A-nodosum_M_contig89.22.1 ID=mRNA_A-nodosum_M_contig89.22.1|Name=mRNA_A-nodosum_M_contig89.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig89:164651..165757- (Ascophyllum nodosum dioecious)
ATGTGGGAGATGGTGGAGAGCTTCGAGAAGCGACTGAGCGTTTATGCGCA
GGAAATATGCGCGATACAACAGCAGCTCTCGGACGAGCCGCAGCAGGGAG
GGGAAACGGCGCCGCCACCGTACGGGCAGCGAACGCGCGTCACGCCCGAA
CGCTTGGCCTTGGTTATACGCGAGCAGTGTAAGAATTTTTATCAG
back to top